Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009941

Physical Location & Seq

Genomic Coordinates Reverse (-)

31511163 .. 31511599

Gene Structure 437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0194900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGGGAGGGTGGCCTCCTAGCAAGGTACCGGCCGACCTCCACCATAGCGAGGTAGCTCGGGTGTCGGACTACCGGATGCATGTTGTAGGCGGGACTAGCCATGCCGCGGGGCCCACCTATGAGGTCGTTGATTATGCTTGGCGGTATGTAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009914 GO:0009956 GO:0009958 GO:0010817 GO:0022622 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0090057 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

51

Amino Acids

5.65

Weight (kDa)

6.37

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16510 AT1G56150 AT1G79130 AT3G12830
fragaria_vesca	FvH4_3g15390
malus_domestica	MD05G1223400.v1.1 MD10G1204800.v1.1
prunus_persica	Prupe.4G136800_v2.0.a1
pyrus_communis	pycom05g20630
rosa_chinensis	RchiOBHm_Chr1g0324921 RchiOBHm_Chr5g0025871
rosa_laevigata	RLG00000017123
rosa_multiflora	Rmu_sc0000968.1_g000024
rosa_roxburghii	Rroxscaffold_1G00073720 Rroxscaffold_7G00170940 Rroxscaffold_7G00180320
rosa_rugosa	Rorug01G0048500 Rorug05G0089100 Rorug06G0194900
rosa_samantha	Rh2BG576100
rosa_wichuraiana	Rw5G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	25
AccB1I	GGYRCC	1 cut(s)	25
AccII	CGCG	1 cut(s)	107
AciI	CCGC	4 cut(s)	90, 105, 107, 142
AcoI	YGGCCR	1 cut(s)	30
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	2 cut(s)	49, 106
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	3 cut(s)	11, 30, 110
ApaI	GGGCCC	1 cut(s)	114
Asp718I	GGTACC	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	110, 111
AvaI	CYCGRG	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	114
BanI	GGYRCC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	114
BfaI	CTAG	2 cut(s)	18, 96
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	110, 111
BmiI	GGNNCC	3 cut(s)	27, 111, 112
BmsI	GCATC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 106
Bse118I	RCCGGY	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	49, 106
BseSI	GKGCMC	1 cut(s)	114
BseX3I	CGGCCG	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	107
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	3 cut(s)	13, 32, 112
BshNI	GGYRCC	1 cut(s)	25
BsiEI	CGRYCG	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	29, 73
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	2 cut(s)	49, 106
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	3 cut(s)	13, 32, 112
BsoBI	CYCGRG	1 cut(s)	57
Bsp120I	GGGCCC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	114
BspACI	CCGC	4 cut(s)	90, 105, 107, 142
BspANI	GGCC	3 cut(s)	13, 32, 112
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	3 cut(s)	27, 111, 112
BspT107I	GGYRCC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	105
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	107
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNSI	RCATGY	1 cut(s)	83
BstSLI	GKGCMC	1 cut(s)	114
BstUI	CGCG	1 cut(s)	107
BstZI	CGGCCG	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	13, 32, 112
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	81
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	110, 111
Cfr42I	CCGCGG	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	2 cut(s)	80, 101
CviJI	RGCY	5 cut(s)	13, 32, 56, 99, 112
CviKI_1	RGCY	5 cut(s)	13, 32, 56, 99, 112
CviQI	GTAC	1 cut(s)	26
EaeI	YGGCCR	1 cut(s)	30
EagI	CGGCCG	1 cut(s)	30
EclXI	CGGCCG	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	114
Eco52I	CGGCCG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	110
EcoT22I	ATGCAT	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	2 cut(s)	83, 104
FaiI	YATR	7 cut(s)	45, 81, 102, 120, 135, 147, 154
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	2 cut(s)	79, 100
FauI	CCCGC	2 cut(s)	83, 100
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	2 cut(s)	18, 96
GluI	GCNGC	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	13, 32, 112
HapII	CCGG	2 cut(s)	29, 73
Hin1II	CATG	2 cut(s)	83, 104
HpaII	CCGG	2 cut(s)	29, 73
Hpy188I	TCNGA	1 cut(s)	67
HpyCH4V	TGCA	1 cut(s)	79
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	83, 104
KpnI	GGTACC	1 cut(s)	29
KspI	CCGCGG	1 cut(s)	108
LpnPI	CCDG	2 cut(s)	42, 86
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	2 cut(s)	18, 96
MhlI	GDGCHC	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	4 cut(s)	24, 43, 47, 115
Mph1103I	ATGCAT	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	2 cut(s)	29, 73
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	96
NlaIII	CATG	2 cut(s)	83, 104
NlaIV	GGNNCC	3 cut(s)	27, 111, 112
NsiI	ATGCAT	1 cut(s)	81
NspI	RCATGY	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	106
PspN4I	GGNNCC	3 cut(s)	27, 111, 112
PspOMI	GGGCCC	1 cut(s)	110
PspPI	GGNCC	2 cut(s)	110, 111
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SacII	CCGCGG	1 cut(s)	108
SatI	GCNGC	1 cut(s)	105
Sau96I	GGNCC	2 cut(s)	110, 111
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	6 cut(s)	27, 39, 54, 58, 119, 126
SfaNI	GCATC	1 cut(s)	66
Sfr303I	CCGCGG	1 cut(s)	108
SgrBI	CCGCGG	1 cut(s)	108
SsiI	CCGC	4 cut(s)	90, 105, 107, 142
SspMI	CTAG	2 cut(s)	18, 96
TauI	GCSGC	1 cut(s)	107
XceI	RCATGY	1 cut(s)	83
XspI	CTAG	2 cut(s)	18, 96
Zsp2I	ATGCAT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.