Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009941

Physical Location & Seq

Genomic Coordinates Forward (+)

35609400 .. 35609819

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1223400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAAGCAGCTCATCCGCCGTCTGTCCCGCGTCGCCGACTCCTCGCAGTACTGCCTCCTGCGCTCCCCGGCGGACGCAGCCTCCCGCCCGCGCAGAAACGAATCGTTCCGTGTGAAGCTCCGGCGCCGGAGATCCTCCGCTGGCGAGCCGGTGGTCCCCGAGGGCCACGTCCCGGTCTACGTCGGCGACGAGATGGAGAGGTTCGTGGTCAGCGCCGAGCTCCTGAACCACCCGGTCTTCGTCGAGCTCCTCAACAAGTCGGCCCAGGAGTACGGCTACGAGCAGAAGGGCGTCCTCCGGATCCCCTGCCACGTGATCGTCTTCGAGCGCGTGCTCGAGGCGCTCCGCCTCGGACAGGCCCCCTCACATGACCTGCACGATCTCCTGAACTCGATCTCCGACGACCTGAGATCCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009914 GO:0009956 GO:0009958 GO:0010817 GO:0022622 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0090057 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

140

Amino Acids

15.93

Weight (kDa)

9.09

Isoelectric Point (pI)

76.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	31 - 115	1.9e-29	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16510 AT1G56150 AT1G79130 AT3G12830
fragaria_vesca	FvH4_3g15390
malus_domestica	MD05G1223400.v1.1 MD10G1204800.v1.1
prunus_persica	Prupe.4G136800_v2.0.a1
pyrus_communis	pycom05g20630
rosa_chinensis	RchiOBHm_Chr1g0324921 RchiOBHm_Chr5g0025871
rosa_laevigata	RLG00000017123
rosa_multiflora	Rmu_sc0000968.1_g000024
rosa_roxburghii	Rroxscaffold_1G00073720 Rroxscaffold_7G00170940 Rroxscaffold_7G00180320
rosa_rugosa	Rorug01G0048500 Rorug05G0089100 Rorug06G0194900
rosa_samantha	Rh2BG576100
rosa_wichuraiana	Rw5G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	3 cut(s)	30, 91, 330
AccIII	TCCGGA	1 cut(s)	297
AciI	CCGC	7 cut(s)	16, 28, 71, 85, 89, 138, 346
AclWI	GGATC	4 cut(s)	126, 295, 308, 405
AcvI	CACGTG	1 cut(s)	313
AcyI	GRCGYC	2 cut(s)	124, 291
AfaI	GTAC	2 cut(s)	50, 272
AfiI	CCNNNNNNNGG	2 cut(s)	172, 355
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	2 cut(s)	264, 413
AloI	GAACNNNNNNTCC	2 cut(s)	380, 412
AluBI	AGCT	4 cut(s)	10, 118, 220, 247
AluI	AGCT	4 cut(s)	10, 118, 220, 247
Alw21I	GWGCWC	3 cut(s)	222, 249, 336
AlwI	GGATC	4 cut(s)	126, 295, 308, 405
Ama87I	CYCGRG	2 cut(s)	158, 335
Aor13HI	TCCGGA	1 cut(s)	297
AoxI	GGCC	3 cut(s)	163, 261, 357
ApeKI	GCWGC	2 cut(s)	7, 77
AspLEI	GCGC	6 cut(s)	63, 93, 126, 215, 330, 343
AspS9I	GGNCC	4 cut(s)	154, 163, 262, 358
AsuC2I	CCSGG	3 cut(s)	68, 173, 233
AvaI	CYCGRG	2 cut(s)	158, 335
AvaII	GGWCC	1 cut(s)	154
BamHI	GGATCC	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	123
BanII	GRGCYC	2 cut(s)	222, 249
BbrPI	CACGTG	1 cut(s)	313
BbsI	GAAGAC	2 cut(s)	229, 313
Bbv12I	GWGCWC	3 cut(s)	222, 249, 336
BbvI	GCAGC	2 cut(s)	19, 89
BccI	CCATC	1 cut(s)	187
BceAI	ACGGC	2 cut(s)	3, 289
BciT130I	CCWGG	2 cut(s)	266, 415
BcnI	CCSGG	3 cut(s)	68, 173, 233
BfoI	RGCGCY	3 cut(s)	127, 216, 344
BfuAI	ACCTGC	1 cut(s)	381
BisI	GCNGC	2 cut(s)	8, 78
BlsI	GCNGC	2 cut(s)	9, 79
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	5 cut(s)	68, 173, 233, 266, 415
Bme18I	GGWCC	1 cut(s)	154
BmeT110I	CYCGRG	2 cut(s)	158, 335
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	4 cut(s)	154, 163, 262, 358
BmiI	GGNNCC	4 cut(s)	125, 156, 302, 360
BmrFI	CCNGG	5 cut(s)	68, 173, 233, 266, 415
BpiI	GAAGAC	2 cut(s)	229, 313
BpuMI	CCSGG	3 cut(s)	68, 173, 233
BsaAI	YACGTR	1 cut(s)	313
BsaHI	GRCGYC	2 cut(s)	124, 291
BsaJI	CCNNGG	4 cut(s)	66, 159, 264, 349
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 380, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 355
Bse118I	RCCGGY	1 cut(s)	148
BseAI	TCCGGA	1 cut(s)	297
BseBI	CCWGG	2 cut(s)	266, 415
BseDI	CCNNGG	4 cut(s)	66, 159, 264, 349
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	172, 355
BseMII	CTCAG	1 cut(s)	398
BseRI	GAGGAG	2 cut(s)	31, 239
BseXI	GCAGC	2 cut(s)	19, 89
BsgI	GTGCAG	1 cut(s)	359
Bsh1236I	CGCG	3 cut(s)	30, 91, 330
BshFI	GGCC	3 cut(s)	165, 263, 359
BshNI	GGYRCC	1 cut(s)	123
BsiHKAI	GWGCWC	3 cut(s)	222, 249, 336
BsiHKCI	CYCGRG	2 cut(s)	158, 335
BsiSI	CCGG	7 cut(s)	68, 121, 127, 149, 173, 233, 298
BslFI	GGGAC	3 cut(s)	10, 140, 155
BslI	CCNNNNNNNGG	2 cut(s)	172, 355
BsmFI	GGGAC	3 cut(s)	10, 140, 155
BsnI	GGCC	3 cut(s)	165, 263, 359
BsoBI	CYCGRG	2 cut(s)	158, 335
Bsp1286I	GDGCHC	3 cut(s)	222, 249, 336
Bsp13I	TCCGGA	1 cut(s)	297
Bsp143I	GATC	6 cut(s)	131, 300, 315, 379, 393, 410
BspACI	CCGC	7 cut(s)	16, 28, 71, 85, 89, 138, 346
BspANI	GGCC	3 cut(s)	165, 263, 359
BspCNI	CTCAG	1 cut(s)	399
BspEI	TCCGGA	1 cut(s)	297
BspFNI	CGCG	3 cut(s)	30, 91, 330
BspLI	GGNNCC	4 cut(s)	125, 156, 302, 360
BspMI	ACCTGC	1 cut(s)	381
BspPI	GGATC	4 cut(s)	126, 295, 308, 405
BspT107I	GGYRCC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	4 cut(s)	66, 159, 264, 349
BssMI	GATC	6 cut(s)	131, 300, 315, 379, 393, 410
BssNI	GRCGYC	2 cut(s)	124, 291
Bst2UI	CCWGG	2 cut(s)	266, 415
BstACI	GRCGYC	2 cut(s)	124, 291
BstBAI	YACGTR	1 cut(s)	313
BstC8I	GCNNGC	4 cut(s)	89, 142, 146, 332
BstDEI	CTNAG	1 cut(s)	407
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	12
BstFNI	CGCG	3 cut(s)	30, 91, 330
BstH2I	RGCGCY	3 cut(s)	127, 216, 344
BstHHI	GCGC	6 cut(s)	63, 93, 126, 215, 330, 343
BstKTI	GATC	6 cut(s)	134, 303, 318, 382, 396, 413
BstMBI	GATC	6 cut(s)	131, 300, 315, 379, 393, 410
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 77, 340
BstNI	CCWGG	2 cut(s)	266, 415
BstSCI	CCNGG	5 cut(s)	66, 171, 231, 264, 413
BstUI	CGCG	3 cut(s)	30, 91, 330
BstV1I	GCAGC	2 cut(s)	19, 89
BstV2I	GAAGAC	2 cut(s)	229, 313
BstX2I	RGATCY	3 cut(s)	131, 300, 410
BstYI	RGATCY	3 cut(s)	131, 300, 410
BsuRI	GGCC	3 cut(s)	165, 263, 359
BtrI	CACGTC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	381
Cac8I	GCNNGC	4 cut(s)	89, 142, 146, 332
CfoI	GCGC	6 cut(s)	63, 93, 126, 215, 330, 343
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	4 cut(s)	154, 163, 262, 358
CseI	GACGC	3 cut(s)	19, 83, 280
Csp6I	GTAC	2 cut(s)	49, 271
CviAII	CATG	1 cut(s)	368
CviQI	GTAC	2 cut(s)	49, 271
DdeI	CTNAG	1 cut(s)	407
DinI	GGCGCC	1 cut(s)	125
DpnI	GATC	6 cut(s)	133, 302, 317, 381, 395, 412
DpnII	GATC	6 cut(s)	131, 300, 315, 379, 393, 410
EciI	GGCGGA	3 cut(s)	5, 86, 335
Ecl136II	GAGCTC	2 cut(s)	220, 247
Eco24I	GRGCYC	2 cut(s)	222, 249
Eco47I	GGWCC	1 cut(s)	154
Eco53kI	GAGCTC	2 cut(s)	220, 247
Eco72I	CACGTG	1 cut(s)	313
Eco88I	CYCGRG	2 cut(s)	158, 335
EcoICRI	GAGCTC	2 cut(s)	220, 247
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	264, 413
EcoT38I	GRGCYC	2 cut(s)	222, 249
EgeI	GGCGCC	1 cut(s)	125
EheI	GGCGCC	1 cut(s)	125
FaeI	CATG	1 cut(s)	371
FaiI	YATR	1 cut(s)	369
FaqI	GGGAC	3 cut(s)	10, 140, 155
FatI	CATG	1 cut(s)	367
FauI	CCCGC	3 cut(s)	35, 92, 96
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	2 cut(s)	8, 78
FriOI	GRGCYC	2 cut(s)	222, 249
Fsp4HI	GCNGC	2 cut(s)	8, 78
GlaI	GCGC	6 cut(s)	62, 92, 125, 214, 329, 342
GluI	GCNGC	2 cut(s)	8, 78
HaeII	RGCGCY	3 cut(s)	127, 216, 344
HaeIII	GGCC	3 cut(s)	165, 263, 359
HapII	CCGG	7 cut(s)	68, 121, 127, 149, 173, 233, 298
HgaI	GACGC	3 cut(s)	19, 83, 280
HhaI	GCGC	6 cut(s)	63, 93, 126, 215, 330, 343
Hin1I	GRCGYC	2 cut(s)	124, 291
Hin1II	CATG	1 cut(s)	371
Hin6I	GCGC	6 cut(s)	61, 91, 124, 213, 328, 341
HinP1I	GCGC	6 cut(s)	61, 91, 124, 213, 328, 341
HinfI	GANTC	2 cut(s)	38, 101
HpaII	CCGG	7 cut(s)	68, 121, 127, 149, 173, 233, 298
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	2 cut(s)	353, 400
Hpy188III	TCNNGA	3 cut(s)	223, 298, 385
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	5 cut(s)	35, 185, 191, 245, 404
HpyAV	CCTTC	1 cut(s)	280
HpyCH4IV	ACGT	3 cut(s)	168, 180, 312
HpyCH4V	TGCA	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 77, 340
HpyF3I	CTNAG	1 cut(s)	407
HpySE526I	ACGT	3 cut(s)	168, 180, 312
Hsp92I	GRCGYC	2 cut(s)	124, 291
Hsp92II	CATG	1 cut(s)	371
HspAI	GCGC	6 cut(s)	61, 91, 124, 213, 328, 341
KasI	GGCGCC	1 cut(s)	123
Kpn2I	TCCGGA	1 cut(s)	297
Kzo9I	GATC	6 cut(s)	131, 300, 315, 379, 393, 410
LmnI	GCTCC	5 cut(s)	68, 123, 225, 252, 348
Lsp1109I	GCAGC	2 cut(s)	19, 89
MaeII	ACGT	3 cut(s)	168, 180, 312
MalI	GATC	6 cut(s)	133, 302, 317, 381, 395, 412
MboI	GATC	6 cut(s)	131, 300, 315, 379, 393, 410
MboII	GAAGA	2 cut(s)	229, 313
MflI	RGATCY	3 cut(s)	131, 300, 410
MhlI	GDGCHC	3 cut(s)	222, 249, 336
Mly113I	GGCGCC	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	32
MroI	TCCGGA	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	7 cut(s)	68, 121, 127, 149, 173, 233, 298
MspR9I	CCNGG	5 cut(s)	68, 173, 233, 266, 415
MvaI	CCWGG	2 cut(s)	266, 415
MvnI	CGCG	3 cut(s)	30, 91, 330
MwoI	GCNNNNNNNGC	3 cut(s)	60, 77, 340
NarI	GGCGCC	1 cut(s)	124
NciI	CCSGG	3 cut(s)	68, 173, 233
NdeII	GATC	6 cut(s)	131, 300, 315, 379, 393, 410
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	4 cut(s)	125, 156, 302, 360
NmeAIII	GCCGAG	1 cut(s)	241
PaeR7I	CTCGAG	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	9, 79
PleI	GAGTC	1 cut(s)	32
PluTI	GGCGCC	1 cut(s)	127
PmaCI	CACGTG	1 cut(s)	313
PmlI	CACGTG	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	32
Ppu21I	YACGTR	1 cut(s)	313
Psp124BI	GAGCTC	2 cut(s)	222, 249
Psp6I	CCWGG	2 cut(s)	264, 413
PspCI	CACGTG	1 cut(s)	313
PspGI	CCWGG	2 cut(s)	264, 413
PspN4I	GGNNCC	4 cut(s)	125, 156, 302, 360
PspPI	GGNCC	4 cut(s)	154, 163, 262, 358
PspXI	VCTCGAGB	1 cut(s)	335
PsuI	RGATCY	3 cut(s)	131, 300, 410
RsaI	GTAC	2 cut(s)	50, 272
RsaNI	GTAC	2 cut(s)	49, 271
SacI	GAGCTC	2 cut(s)	222, 249
SatI	GCNGC	2 cut(s)	8, 78
Sau3AI	GATC	6 cut(s)	131, 300, 315, 379, 393, 410
Sau96I	GGNCC	4 cut(s)	154, 163, 262, 358
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	5 cut(s)	68, 173, 233, 266, 415
SduI	GDGCHC	3 cut(s)	222, 249, 336
SfoI	GGCGCC	1 cut(s)	125
Sfr274I	CTCGAG	1 cut(s)	335
SinI	GGWCC	1 cut(s)	154
SlaI	CTCGAG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
SsiI	CCGC	7 cut(s)	16, 28, 71, 85, 89, 138, 346
SspDI	GGCGCC	1 cut(s)	123
SstI	GAGCTC	2 cut(s)	222, 249
StyD4I	CCNGG	5 cut(s)	66, 171, 231, 264, 413
TaiI	ACGT	3 cut(s)	171, 183, 315
TaqI	TCGA	4 cut(s)	243, 324, 336, 392
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	7, 77
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	154
XagI	CCTNNNNNAGG	1 cut(s)	353
XhoI	CTCGAG	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	177
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.