Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009941

Physical Location & Seq

Genomic Coordinates Reverse (-)

9580090 .. 9581268

Gene Structure 1179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g15390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAAGCAGTTGATCCGACGTCTCTCCCGCGTCGCCGACTCCTCGCAGTACTGCCTCCTCCGCTCCGACTCCTCCTCCGCTGCCGCCGCGTCCGGTTCTTCTTCGAGGACTCGCAGAGTACTGAAGCTCCGGCGACGGAAGAGCTCCTCGGAGACCGGAGTTCCCGAGGGACACGTGCCGGTGTACGTCGGTGACGAGATGGAGCGGTTCGTCGTCTCCGCCGAGCTTCTCAACCACCCGGTGTTCGTCGAGCTTTTGAACAAGTCGGCGCAGGAGTACGGCTACGAGCAGCGCGGCGTGCTCCGGATTCCCTGCCACGTGGTGCTCTTCGAGCGCGTCCTCGAGGCGCTCCGCCTCGGACGCGCCGCGCCGTCCAGTGACATCAGCGACCTCCTCGGCTCCTCCTCCGACGATCGTCACTTCATCTACGCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009914 GO:0009956 GO:0009958 GO:0010817 GO:0022622 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0090057 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

146

Amino Acids

16.17

Weight (kDa)

9.34

Isoelectric Point (pI)

68.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	32 - 117	3.7e-30	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16510 AT1G56150 AT1G79130 AT3G12830
fragaria_vesca	FvH4_3g15390
malus_domestica	MD05G1223400.v1.1 MD10G1204800.v1.1
prunus_persica	Prupe.4G136800_v2.0.a1
pyrus_communis	pycom05g20630
rosa_chinensis	RchiOBHm_Chr1g0324921 RchiOBHm_Chr5g0025871
rosa_laevigata	RLG00000017123
rosa_multiflora	Rmu_sc0000968.1_g000024
rosa_roxburghii	Rroxscaffold_1G00073720 Rroxscaffold_7G00170940 Rroxscaffold_7G00180320
rosa_rugosa	Rorug01G0048500 Rorug05G0089100 Rorug06G0194900
rosa_samantha	Rh2BG576100
rosa_wichuraiana	Rw5G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	22
AbsI	CCTCGAGG	1 cut(s)	341
AccBSI	CCGCTC	2 cut(s)	63, 205
AccII	CGCG	6 cut(s)	30, 89, 294, 336, 363, 368
AccIII	TCCGGA	1 cut(s)	303
AclWI	GGATC	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	143
AcvI	CACGTG	2 cut(s)	175, 319
AcyI	GRCGYC	1 cut(s)	19
AdeI	CACNNNGTG	2 cut(s)	241, 322
AfaI	GTAC	4 cut(s)	50, 120, 185, 278
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	4 cut(s)	127, 144, 226, 253
AluI	AGCT	4 cut(s)	127, 144, 226, 253
Alw21I	GWGCWC	3 cut(s)	146, 303, 327
Alw26I	GTCTC	3 cut(s)	26, 146, 220
AlwI	GGATC	1 cut(s)	7
Ama87I	CYCGRG	2 cut(s)	164, 341
Aor13HI	TCCGGA	1 cut(s)	303
ApeKI	GCWGC	2 cut(s)	80, 289
AspLEI	GCGC	6 cut(s)	271, 294, 336, 349, 365, 370
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	203
AvaI	CYCGRG	2 cut(s)	164, 341
BanII	GRGCYC	1 cut(s)	146
BbrPI	CACGTG	2 cut(s)	175, 319
Bbv12I	GWGCWC	3 cut(s)	146, 303, 327
BbvI	GCAGC	2 cut(s)	67, 301
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	2 cut(s)	295, 355
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	3 cut(s)	26, 146, 220
BfoI	RGCGCY	1 cut(s)	350
BisI	GCNGC	6 cut(s)	81, 84, 87, 290, 295, 366
BlsI	GCNGC	6 cut(s)	82, 85, 88, 291, 296, 367
BmcAI	AGTACT	2 cut(s)	50, 120
Bme1390I	CCNGG	1 cut(s)	239
BmeT110I	CYCGRG	2 cut(s)	164, 341
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	239
BoxI	GACNNNNGTC	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	239
BsaAI	YACGTR	2 cut(s)	175, 319
BsaHI	GRCGYC	1 cut(s)	19
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	4 cut(s)	147, 165, 355, 394
BsaWI	WCCGGW	3 cut(s)	92, 155, 303
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 89, 111, 141
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	375
BseAI	TCCGGA	1 cut(s)	303
BseDI	CCNNGG	4 cut(s)	147, 165, 355, 394
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	8 cut(s)	31, 47, 61, 64, 136, 383, 391, 394
BseXI	GCAGC	2 cut(s)	67, 301
Bsh1236I	CGCG	6 cut(s)	30, 89, 294, 336, 363, 368
Bsh1285I	CGRYCG	1 cut(s)	415
BsiEI	CGRYCG	1 cut(s)	415
BsiHKAI	GWGCWC	3 cut(s)	146, 303, 327
BsiHKCI	CYCGRG	2 cut(s)	164, 341
BsiSI	CCGG	6 cut(s)	93, 130, 156, 179, 239, 304
BslFI	GGGAC	1 cut(s)	183
BsmAI	GTCTC	3 cut(s)	26, 146, 220
BsmBI	CGTCTC	2 cut(s)	26, 220
BsmFI	GGGAC	1 cut(s)	183
Bso31I	GGTCTC	1 cut(s)	146
BsoBI	CYCGRG	2 cut(s)	164, 341
Bsp1286I	GDGCHC	3 cut(s)	146, 303, 327
Bsp13I	TCCGGA	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	12, 412
BspEI	TCCGGA	1 cut(s)	303
BspFNI	CGCG	6 cut(s)	30, 89, 294, 336, 363, 368
BspLI	GGNNCC	1 cut(s)	400
BspPI	GGATC	1 cut(s)	7
BspQI	GCTCTTC	2 cut(s)	134, 332
BspTNI	GGTCTC	1 cut(s)	146
BsrBI	CCGCTC	2 cut(s)	63, 205
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	4 cut(s)	147, 165, 355, 394
BssMI	GATC	2 cut(s)	12, 412
BssNI	GRCGYC	1 cut(s)	19
Bst6I	CTCTTC	2 cut(s)	134, 332
BstACI	GRCGYC	1 cut(s)	19
BstBAI	YACGTR	2 cut(s)	175, 319
BstC8I	GCNNGC	1 cut(s)	299
BstFNI	CGCG	6 cut(s)	30, 89, 294, 336, 363, 368
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	6 cut(s)	271, 294, 336, 349, 365, 370
BstKTI	GATC	2 cut(s)	15, 415
BstMAI	GTCTC	3 cut(s)	26, 146, 220
BstMBI	GATC	2 cut(s)	12, 412
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 86, 298, 331, 360
BstPAI	GACNNNNGTC	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	237
BstUI	CGCG	6 cut(s)	30, 89, 294, 336, 363, 368
BstV1I	GCAGC	2 cut(s)	67, 301
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	299
CfoI	GCGC	6 cut(s)	271, 294, 336, 349, 365, 370
Cfr10I	RCCGGY	1 cut(s)	178
CseI	GACGC	4 cut(s)	19, 78, 325, 369
Csp6I	GTAC	4 cut(s)	49, 119, 184, 277
CviJI	RGCY	6 cut(s)	127, 144, 226, 253, 282, 399
CviKI_1	RGCY	6 cut(s)	127, 144, 226, 253, 282, 399
CviQI	GTAC	4 cut(s)	49, 119, 184, 277
DpnI	GATC	2 cut(s)	14, 414
DpnII	GATC	2 cut(s)	12, 412
DraIII	CACNNNGTG	2 cut(s)	241, 322
Eam1104I	CTCTTC	2 cut(s)	134, 332
EarI	CTCTTC	2 cut(s)	134, 332
EciI	GGCGGA	2 cut(s)	208, 341
Ecl136II	GAGCTC	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	143
Eco72I	CACGTG	2 cut(s)	175, 319
Eco88I	CYCGRG	2 cut(s)	164, 341
EcoICRI	GAGCTC	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	146
Esp3I	CGTCTC	2 cut(s)	26, 220
FaqI	GGGAC	1 cut(s)	183
FauI	CCCGC	1 cut(s)	35
Fnu4HI	GCNGC	6 cut(s)	81, 84, 87, 290, 295, 366
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	6 cut(s)	81, 84, 87, 290, 295, 366
GlaI	GCGC	6 cut(s)	270, 293, 335, 348, 364, 369
GluI	GCNGC	6 cut(s)	81, 84, 87, 290, 295, 366
HaeII	RGCGCY	1 cut(s)	350
HapII	CCGG	6 cut(s)	93, 130, 156, 179, 239, 304
HgaI	GACGC	4 cut(s)	19, 78, 325, 369
HhaI	GCGC	6 cut(s)	271, 294, 336, 349, 365, 370
Hin1I	GRCGYC	1 cut(s)	19
Hin6I	GCGC	6 cut(s)	269, 292, 334, 347, 363, 368
HinP1I	GCGC	6 cut(s)	269, 292, 334, 347, 363, 368
HinfI	GANTC	4 cut(s)	38, 68, 109, 307
HpaII	CCGG	6 cut(s)	93, 130, 156, 179, 239, 304
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	5 cut(s)	17, 67, 151, 359, 409
Hpy188III	TCNNGA	2 cut(s)	164, 304
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	7 cut(s)	21, 35, 138, 191, 215, 251, 413
HpyCH4IV	ACGT	4 cut(s)	19, 174, 186, 318
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 86, 298, 331, 360
HpySE526I	ACGT	4 cut(s)	19, 174, 186, 318
Hsp92I	GRCGYC	1 cut(s)	19
HspAI	GCGC	6 cut(s)	269, 292, 334, 347, 363, 368
Kpn2I	TCCGGA	1 cut(s)	303
Kzo9I	GATC	2 cut(s)	12, 412
LguI	GCTCTTC	2 cut(s)	134, 332
LmnI	GCTCC	7 cut(s)	68, 132, 149, 202, 306, 354, 404
LpnPI	CCDG	9 cut(s)	106, 143, 169, 192, 252, 257, 317, 325, 388
Lsp1109I	GCAGC	2 cut(s)	67, 301
MaeII	ACGT	4 cut(s)	19, 174, 186, 318
MaeIII	GTNAC	3 cut(s)	191, 377, 416
MalI	GATC	2 cut(s)	14, 414
MbiI	CCGCTC	2 cut(s)	63, 205
MboI	GATC	2 cut(s)	12, 412
MboII	GAAGA	4 cut(s)	90, 93, 151, 319
MhlI	GDGCHC	3 cut(s)	146, 303, 327
MluCI	AATT	1 cut(s)	433
MlyI	GAGTC	3 cut(s)	32, 62, 103
MmeI	TCCRAC	3 cut(s)	40, 90, 432
MroI	TCCGGA	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	6 cut(s)	93, 130, 156, 179, 239, 304
MspR9I	CCNGG	1 cut(s)	239
MteI	GCGCNGCGC	1 cut(s)	366
MvnI	CGCG	6 cut(s)	30, 89, 294, 336, 363, 368
MwoI	GCNNNNNNNGC	5 cut(s)	60, 86, 298, 331, 360
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	2 cut(s)	12, 412
NlaIV	GGNNCC	1 cut(s)	400
NmeAIII	GCCGAG	2 cut(s)	247, 375
NmuCI	GTSAC	3 cut(s)	191, 377, 416
PaeR7I	CTCGAG	1 cut(s)	341
PciSI	GCTCTTC	2 cut(s)	134, 332
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 219
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	6 cut(s)	82, 85, 88, 291, 296, 367
Ple19I	CGATCG	1 cut(s)	415
PleI	GAGTC	3 cut(s)	32, 62, 103
PmaCI	CACGTG	2 cut(s)	175, 319
PmlI	CACGTG	2 cut(s)	175, 319
PpsI	GAGTC	3 cut(s)	32, 62, 103
Ppu21I	YACGTR	2 cut(s)	175, 319
PshAI	GACNNNNGTC	1 cut(s)	414
Psp124BI	GAGCTC	1 cut(s)	146
PspCI	CACGTG	2 cut(s)	175, 319
PspN4I	GGNNCC	1 cut(s)	400
PspXI	VCTCGAGB	1 cut(s)	341
PvuI	CGATCG	1 cut(s)	415
RsaI	GTAC	4 cut(s)	50, 120, 185, 278
RsaNI	GTAC	4 cut(s)	49, 119, 184, 277
SacI	GAGCTC	1 cut(s)	146
SapI	GCTCTTC	2 cut(s)	134, 332
SatI	GCNGC	6 cut(s)	81, 84, 87, 290, 295, 366
Sau3AI	GATC	2 cut(s)	12, 412
ScaI	AGTACT	2 cut(s)	50, 120
SchI	GAGTC	3 cut(s)	32, 62, 103
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	3 cut(s)	146, 303, 327
SetI	ASST	9 cut(s)	22, 129, 146, 177, 189, 228, 255, 321, 393
Sfr274I	CTCGAG	1 cut(s)	341
SlaI	CTCGAG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	1 cut(s)	433
SstI	GAGCTC	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	237
TaiI	ACGT	4 cut(s)	22, 177, 189, 321
TaqI	TCGA	4 cut(s)	104, 249, 330, 342
TasI	AATT	1 cut(s)	433
TatI	WGTACW	2 cut(s)	48, 118
TauI	GCSGC	4 cut(s)	86, 89, 297, 368
TfiI	GAWTC	1 cut(s)	307
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	3 cut(s)	191, 377, 416
TseI	GCWGC	2 cut(s)	80, 289
Tsp45I	GTSAC	3 cut(s)	191, 377, 416
TspDTI	ATGAA	2 cut(s)	17, 412
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	1 cut(s)	382
XhoI	CTCGAG	1 cut(s)	341
ZraI	GACGTC	1 cut(s)	20
ZrmI	AGTACT	2 cut(s)	50, 120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.