Rroxscaffold_1G00073720

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0009941
Physical Location & Seq
Reverse (-)
94436724 .. 94436963
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00073720.1

Sequence Viewer

Length: 240 bp
ATGCTAGTGTACATCGGCGACGACATGGAGAGGTTCGTCGTCTCCGCCGAGCTCCTCAACCACCTGGTGTTCATTGAGCTCCTCAACAAGTGGGCGCAGGAGTACGGCTACGAGCAGCGCAGCGTGCTCCAGATTCTCTGCCTGGTGGTGGTGTTCGAGCGCGTCCTCGAGACGCTCCGGCTGGGGTGGTTTCTCTCTCCGCATGTTATCTCTGGAGTCCAAAATGGGAAGACCTCATAA

Protein Analysis

79

Amino Acids

9.15

Weight (kDa)

5.17

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 2 - 59 9e-17 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 162
AciI CCGC 2 cut(s) 45, 200
AdeI CACNNNGTG 1 cut(s) 67
AfaI GTAC 2 cut(s) 11, 104
AfiI CCNNNNNNNGG 1 cut(s) 148
AjnI CCWGG 2 cut(s) 63, 141
AluBI AGCT 2 cut(s) 52, 79
AluI AGCT 2 cut(s) 52, 79
Alw21I GWGCWC 3 cut(s) 54, 81, 129
Alw26I GTCTC 2 cut(s) 46, 164
Ama87I CYCGRG 1 cut(s) 167
ApeKI GCWGC 2 cut(s) 115, 120
AspLEI GCGC 3 cut(s) 97, 120, 162
AvaI CYCGRG 1 cut(s) 167
BanII GRGCYC 2 cut(s) 54, 81
BbsI GAAGAC 1 cut(s) 236
Bbv12I GWGCWC 3 cut(s) 54, 81, 129
BbvI GCAGC 2 cut(s) 127, 132
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 2 cut(s) 65, 143
BcoDI GTCTC 2 cut(s) 46, 164
BfaI CTAG 1 cut(s) 5
BisI GCNGC 2 cut(s) 116, 121
BlsI GCNGC 2 cut(s) 117, 122
Bme1390I CCNGG 2 cut(s) 65, 143
BmeT110I CYCGRG 1 cut(s) 167
BmrFI CCNGG 2 cut(s) 65, 143
BpiI GAAGAC 1 cut(s) 236
BpmI CTGGAG 2 cut(s) 113, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 148
BseBI CCWGG 2 cut(s) 65, 143
BseLI CCNNNNNNNGG 1 cut(s) 148
BseRI GAGGAG 2 cut(s) 44, 71
BseXI GCAGC 2 cut(s) 127, 132
BseYI CCCAGC 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 162
BsiHKAI GWGCWC 3 cut(s) 54, 81, 129
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 2 cut(s) 46, 164
BsmBI CGTCTC 2 cut(s) 46, 164
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 3 cut(s) 54, 81, 129
Bsp1407I TGTACA 1 cut(s) 9
BspACI CCGC 2 cut(s) 45, 200
BspFNI CGCG 1 cut(s) 162
BsrGI TGTACA 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 65, 143
BstAUI TGTACA 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 125
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 3 cut(s) 97, 120, 162
BstMAI GTCTC 2 cut(s) 46, 164
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNI CCWGG 2 cut(s) 65, 143
BstNSI RCATGY 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 63, 141
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 127, 132
BstV2I GAAGAC 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 125
CfoI GCGC 3 cut(s) 97, 120, 162
CseI GACGC 2 cut(s) 151, 181
CsiI ACCWGGT 1 cut(s) 63
Csp6I GTAC 2 cut(s) 10, 103
CviAII CATG 2 cut(s) 25, 203
CviJI RGCY 4 cut(s) 52, 79, 108, 181
CviKI_1 RGCY 4 cut(s) 52, 79, 108, 181
CviQI GTAC 2 cut(s) 10, 103
DraIII CACNNNGTG 1 cut(s) 67
EciI GGCGGA 1 cut(s) 34
Ecl136II GAGCTC 2 cut(s) 52, 79
Eco24I GRGCYC 2 cut(s) 54, 81
Eco53kI GAGCTC 2 cut(s) 52, 79
Eco88I CYCGRG 1 cut(s) 167
EcoICRI GAGCTC 2 cut(s) 52, 79
EcoRII CCWGG 2 cut(s) 63, 141
EcoT38I GRGCYC 2 cut(s) 54, 81
Esp3I CGTCTC 2 cut(s) 46, 164
FaeI CATG 2 cut(s) 28, 206
FaiI YATR 3 cut(s) 26, 204, 238
FatI CATG 2 cut(s) 24, 202
Fnu4HI GCNGC 2 cut(s) 116, 121
FriOI GRGCYC 2 cut(s) 54, 81
Fsp4HI GCNGC 2 cut(s) 116, 121
FspBI CTAG 1 cut(s) 5
GlaI GCGC 3 cut(s) 96, 119, 161
GluI GCNGC 2 cut(s) 116, 121
GsaI CCCAGC 1 cut(s) 185
GsuI CTGGAG 2 cut(s) 113, 234
HapII CCGG 1 cut(s) 178
HgaI GACGC 2 cut(s) 151, 181
HhaI GCGC 3 cut(s) 97, 120, 162
Hin1II CATG 2 cut(s) 28, 206
Hin6I GCGC 3 cut(s) 95, 118, 160
HinP1I GCGC 3 cut(s) 95, 118, 160
HinfI GANTC 2 cut(s) 133, 216
HpaII CCGG 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 10
Hpy188III TCNNGA 3 cut(s) 130, 169, 213
Hpy8I GTNNAC 1 cut(s) 10
Hpy99I CGWCG 2 cut(s) 23, 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
Hsp92II CATG 2 cut(s) 28, 206
HspAI GCGC 3 cut(s) 95, 118, 160
LmnI GCTCC 4 cut(s) 57, 84, 132, 180
LpnPI CCDG 9 cut(s) 50, 77, 83, 128, 143, 155, 167, 191, 198
Lsp1109I GCAGC 2 cut(s) 127, 132
MabI ACCWGGT 1 cut(s) 63
MaeI CTAG 1 cut(s) 5
MhlI GDGCHC 3 cut(s) 54, 81, 129
MlyI GAGTC 1 cut(s) 225
MnlI CCTC 4 cut(s) 24, 65, 92, 176
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 2 cut(s) 65, 143
MvaI CCWGG 2 cut(s) 65, 143
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 124
NlaIII CATG 2 cut(s) 28, 206
NmeAIII GCCGAG 1 cut(s) 73
NspI RCATGY 1 cut(s) 206
PaeR7I CTCGAG 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 117, 122
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
Psp124BI GAGCTC 2 cut(s) 54, 81
Psp6I CCWGG 2 cut(s) 63, 141
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 2 cut(s) 63, 141
RsaI GTAC 2 cut(s) 11, 104
RsaNI GTAC 2 cut(s) 10, 103
SacI GAGCTC 2 cut(s) 54, 81
SatI GCNGC 2 cut(s) 116, 121
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 2 cut(s) 65, 143
SduI GDGCHC 3 cut(s) 54, 81, 129
SetI ASST 5 cut(s) 35, 54, 66, 81, 236
SexAI ACCWGGT 1 cut(s) 63
Sfr274I CTCGAG 1 cut(s) 167
SlaI CTCGAG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SsiI CCGC 2 cut(s) 45, 200
SspMI CTAG 1 cut(s) 5
SstI GAGCTC 2 cut(s) 54, 81
StyD4I CCNGG 2 cut(s) 63, 141
TaqI TCGA 2 cut(s) 156, 168
TatI WGTACW 1 cut(s) 9
TfiI GAWTC 1 cut(s) 133
TseI GCWGC 2 cut(s) 115, 120
TspDTI ATGAA 1 cut(s) 61
XceI RCATGY 1 cut(s) 206
XhoI CTCGAG 1 cut(s) 167
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.