Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009941

Physical Location & Seq

Genomic Coordinates Reverse (-)

7593725 .. 7595443

Gene Structure 1719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G136800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAAGCAGTTGATCAGAAGGCTCTCCCGCGTCGCCGACTCGTCGCAGTACTGCCTCCTGCGCTCCGCCGACACGGCGTCGTCCCGCCCACGCCGAAGCGAGTCGTTTCGGGTGAAGCTCCGCCGCCGCAGGTCCTCCGCCGGCGAACCGGTGGTTCCAGAGGGACACGTGCCGGTCTATGTTGGCGACGAGATGGAGCGGTTCGTGGTTCACGCCGAGCTGCTGAACCACCCGGTCTTCGTCGAGCTCCTGAACAAGTCGGCTCAGGAGTACGGCTACGAGCAGAAGGGCGTGCTCCGGATCCCTTGTCACGTGATCGTCTTCGAGCGCGTGCTGGAGGCTCTCCGCCTCGGGCAGCCCCCGTCTCGTGACCTGCACGACCTCCTGAGCTCGATCTCCGACGACCTGAGATCCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009914 GO:0009956 GO:0009958 GO:0010817 GO:0022622 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0090057 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

140

Amino Acids

15.99

Weight (kDa)

9.38

Isoelectric Point (pI)

80.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16510 AT1G56150 AT1G79130 AT3G12830
fragaria_vesca	FvH4_3g15390
malus_domestica	MD05G1223400.v1.1 MD10G1204800.v1.1
prunus_persica	Prupe.4G136800_v2.0.a1
pyrus_communis	pycom05g20630
rosa_chinensis	RchiOBHm_Chr1g0324921 RchiOBHm_Chr5g0025871
rosa_laevigata	RLG00000017123
rosa_multiflora	Rmu_sc0000968.1_g000024
rosa_roxburghii	Rroxscaffold_1G00073720 Rroxscaffold_7G00170940 Rroxscaffold_7G00180320
rosa_rugosa	Rorug01G0048500 Rorug05G0089100 Rorug06G0194900
rosa_samantha	Rh2BG576100
rosa_wichuraiana	Rw5G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	120, 381
AccBSI	CCGCTC	1 cut(s)	199
AccII	CGCG	2 cut(s)	30, 330
AccIII	TCCGGA	1 cut(s)	297
AciI	CCGC	9 cut(s)	28, 66, 85, 121, 124, 127, 138, 199, 346
AclWI	GGATC	3 cut(s)	295, 308, 405
AcvI	CACGTG	2 cut(s)	169, 313
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	2 cut(s)	50, 272
AflIII	ACRYGT	1 cut(s)	166
AgeI	ACCGGT	1 cut(s)	148
AhdI	GACNNNNNGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	4 cut(s)	118, 220, 247, 390
AluI	AGCT	4 cut(s)	118, 220, 247, 390
Alw21I	GWGCWC	3 cut(s)	249, 297, 392
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	3 cut(s)	295, 308, 405
Ama87I	CYCGRG	1 cut(s)	350
Aor13HI	TCCGGA	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	220, 355
AsiGI	ACCGGT	1 cut(s)	148
AspLEI	GCGC	2 cut(s)	63, 330
AspS9I	GGNCC	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	300
BanII	GRGCYC	2 cut(s)	249, 392
BauI	CACGAG	1 cut(s)	366
BbrPI	CACGTG	2 cut(s)	169, 313
BbsI	GAAGAC	2 cut(s)	229, 313
Bbv12I	GWGCWC	3 cut(s)	249, 297, 392
BbvI	GCAGC	2 cut(s)	207, 367
BccI	CCATC	1 cut(s)	187
BceAI	ACGGC	2 cut(s)	90, 289
BciT130I	CCWGG	1 cut(s)	415
BclI	TGATCA	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	369
BfuAI	ACCTGC	2 cut(s)	120, 381
BglI	GCCNNNNNGGC	1 cut(s)	74
BisI	GCNGC	4 cut(s)	124, 127, 221, 356
BlsI	GCNGC	4 cut(s)	125, 128, 222, 357
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	233, 415
Bme18I	GGWCC	1 cut(s)	132
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	2 cut(s)	156, 302
BmrFI	CCNGG	2 cut(s)	233, 415
BpiI	GAAGAC	2 cut(s)	229, 313
BpmI	CTGGAG	1 cut(s)	356
Bpu10I	CCTNAGC	2 cut(s)	264, 386
BpuMI	CCSGG	1 cut(s)	233
BsaAI	YACGTR	2 cut(s)	169, 313
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	349
BsaWI	WCCGGW	2 cut(s)	148, 297
Bse118I	RCCGGY	3 cut(s)	140, 148, 172
BseAI	TCCGGA	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	1 cut(s)	349
BseMII	CTCAG	3 cut(s)	278, 377, 398
BseXI	GCAGC	2 cut(s)	207, 367
BsgI	GTGCAG	1 cut(s)	359
Bsh1236I	CGCG	2 cut(s)	30, 330
BshTI	ACCGGT	1 cut(s)	148
BsiHKAI	GWGCWC	3 cut(s)	249, 297, 392
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	5 cut(s)	141, 149, 173, 233, 298
BslFI	GGGAC	2 cut(s)	67, 177
BsmAI	GTCTC	1 cut(s)	369
BsmBI	CGTCTC	1 cut(s)	369
BsmFI	GGGAC	2 cut(s)	67, 177
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	3 cut(s)	249, 297, 392
Bsp13I	TCCGGA	1 cut(s)	297
Bsp143I	GATC	5 cut(s)	12, 300, 315, 393, 410
BspACI	CCGC	9 cut(s)	28, 66, 85, 121, 124, 127, 138, 199, 346
BspCNI	CTCAG	3 cut(s)	277, 378, 399
BspEI	TCCGGA	1 cut(s)	297
BspFNI	CGCG	2 cut(s)	30, 330
BspLI	GGNNCC	2 cut(s)	156, 302
BspMI	ACCTGC	2 cut(s)	120, 381
BspPI	GGATC	3 cut(s)	295, 308, 405
BsrBI	CCGCTC	1 cut(s)	199
BsrFI	RCCGGY	3 cut(s)	140, 148, 172
BssAI	RCCGGY	3 cut(s)	140, 148, 172
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	5 cut(s)	12, 300, 315, 393, 410
BssNI	GRCGYC	1 cut(s)	77
BssSI	CACGAG	1 cut(s)	366
Bst2BI	CACGAG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	415
BstACI	GRCGYC	1 cut(s)	77
BstBAI	YACGTR	2 cut(s)	169, 313
BstC8I	GCNNGC	3 cut(s)	142, 293, 332
BstDEI	CTNAG	3 cut(s)	264, 386, 407
BstFNI	CGCG	2 cut(s)	30, 330
BstHHI	GCGC	2 cut(s)	63, 330
BstKTI	GATC	5 cut(s)	15, 303, 318, 396, 413
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	5 cut(s)	12, 300, 315, 393, 410
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 74
BstNI	CCWGG	1 cut(s)	415
BstSCI	CCNGG	2 cut(s)	231, 413
BstUI	CGCG	2 cut(s)	30, 330
BstV1I	GCAGC	2 cut(s)	207, 367
BstV2I	GAAGAC	2 cut(s)	229, 313
BstX2I	RGATCY	2 cut(s)	300, 410
BstYI	RGATCY	2 cut(s)	300, 410
BveI	ACCTGC	2 cut(s)	120, 381
Cac8I	GCNNGC	3 cut(s)	142, 293, 332
CfoI	GCGC	2 cut(s)	63, 330
Cfr10I	RCCGGY	3 cut(s)	140, 148, 172
Cfr13I	GGNCC	1 cut(s)	132
CseI	GACGC	2 cut(s)	19, 66
Csp6I	GTAC	2 cut(s)	49, 271
CspAI	ACCGGT	1 cut(s)	148
CviJI	RGCY	9 cut(s)	22, 118, 220, 247, 263, 276, 341, 358, 390
CviKI_1	RGCY	9 cut(s)	22, 118, 220, 247, 263, 276, 341, 358, 390
CviQI	GTAC	2 cut(s)	49, 271
DdeI	CTNAG	3 cut(s)	264, 386, 407
DpnI	GATC	5 cut(s)	14, 302, 317, 395, 412
DpnII	GATC	5 cut(s)	12, 300, 315, 393, 410
DriI	GACNNNNNGTC	1 cut(s)	76
Eam1105I	GACNNNNNGTC	1 cut(s)	76
EciI	GGCGGA	4 cut(s)	55, 110, 127, 335
Ecl136II	GAGCTC	2 cut(s)	247, 390
Eco24I	GRGCYC	2 cut(s)	249, 392
Eco47I	GGWCC	1 cut(s)	132
Eco53kI	GAGCTC	2 cut(s)	247, 390
Eco72I	CACGTG	2 cut(s)	169, 313
Eco88I	CYCGRG	1 cut(s)	350
EcoICRI	GAGCTC	2 cut(s)	247, 390
EcoO109I	RGGNCCY	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	413
EcoT38I	GRGCYC	2 cut(s)	249, 392
Esp3I	CGTCTC	1 cut(s)	369
FaiI	YATR	1 cut(s)	180
FaqI	GGGAC	2 cut(s)	67, 177
FauI	CCCGC	2 cut(s)	35, 92
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	4 cut(s)	124, 127, 221, 356
FriOI	GRGCYC	2 cut(s)	249, 392
Fsp4HI	GCNGC	4 cut(s)	124, 127, 221, 356
GlaI	GCGC	2 cut(s)	62, 329
GluI	GCNGC	4 cut(s)	124, 127, 221, 356
GsuI	CTGGAG	1 cut(s)	356
HapII	CCGG	5 cut(s)	141, 149, 173, 233, 298
HgaI	GACGC	2 cut(s)	19, 66
HhaI	GCGC	2 cut(s)	63, 330
Hin1I	GRCGYC	1 cut(s)	77
Hin6I	GCGC	2 cut(s)	61, 328
HinP1I	GCGC	2 cut(s)	61, 328
HinfI	GANTC	2 cut(s)	38, 101
HpaII	CCGG	5 cut(s)	141, 149, 173, 233, 298
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	17, 400
Hpy188III	TCNNGA	6 cut(s)	158, 250, 266, 298, 368, 385
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	6 cut(s)	35, 46, 82, 191, 245, 404
HpyAV	CCTTC	2 cut(s)	12, 280
HpyCH4IV	ACGT	2 cut(s)	168, 312
HpyCH4V	TGCA	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 74
HpyF3I	CTNAG	3 cut(s)	264, 386, 407
HpySE526I	ACGT	2 cut(s)	168, 312
Hsp92I	GRCGYC	1 cut(s)	77
HspAI	GCGC	2 cut(s)	61, 328
Kpn2I	TCCGGA	1 cut(s)	297
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	5 cut(s)	12, 300, 315, 393, 410
LmnI	GCTCC	5 cut(s)	68, 123, 196, 252, 300
Lsp1109I	GCAGC	2 cut(s)	207, 367
MaeII	ACGT	2 cut(s)	168, 312
MaeIII	GTNAC	2 cut(s)	308, 368
MalI	GATC	5 cut(s)	14, 302, 317, 395, 412
MbiI	CCGCTC	1 cut(s)	199
MboI	GATC	5 cut(s)	12, 300, 315, 393, 410
MboII	GAAGA	2 cut(s)	229, 313
MflI	RGATCY	2 cut(s)	300, 410
MhlI	GDGCHC	3 cut(s)	249, 297, 392
MlyI	GAGTC	2 cut(s)	32, 110
MnlI	CCTC	6 cut(s)	65, 145, 154, 331, 359, 392
MreI	CGCCGGCG	1 cut(s)	140
MroI	TCCGGA	1 cut(s)	297
MroNI	GCCGGC	1 cut(s)	140
MspI	CCGG	5 cut(s)	141, 149, 173, 233, 298
MspR9I	CCNGG	2 cut(s)	233, 415
MvaI	CCWGG	1 cut(s)	415
MvnI	CGCG	2 cut(s)	30, 330
MwoI	GCNNNNNNNGC	2 cut(s)	60, 74
NaeI	GCCGGC	1 cut(s)	142
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	5 cut(s)	12, 300, 315, 393, 410
NgoMIV	GCCGGC	1 cut(s)	140
NlaIV	GGNNCC	2 cut(s)	156, 302
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	2 cut(s)	308, 368
PdiI	GCCGGC	1 cut(s)	142
PinAI	ACCGGT	1 cut(s)	148
PkrI	GCNGC	4 cut(s)	125, 128, 222, 357
PleI	GAGTC	2 cut(s)	32, 109
PmaCI	CACGTG	2 cut(s)	169, 313
PmlI	CACGTG	2 cut(s)	169, 313
PpsI	GAGTC	2 cut(s)	32, 109
Ppu21I	YACGTR	2 cut(s)	169, 313
PpuMI	RGGWCCY	1 cut(s)	132
Psp124BI	GAGCTC	2 cut(s)	249, 392
Psp5II	RGGWCCY	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	413
PspCI	CACGTG	2 cut(s)	169, 313
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	2 cut(s)	156, 302
PspPI	GGNCC	1 cut(s)	132
PspPPI	RGGWCCY	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	300, 410
RsaI	GTAC	2 cut(s)	50, 272
RsaNI	GTAC	2 cut(s)	49, 271
SacI	GAGCTC	2 cut(s)	249, 392
SatI	GCNGC	4 cut(s)	124, 127, 221, 356
Sau3AI	GATC	5 cut(s)	12, 300, 315, 393, 410
Sau96I	GGNCC	1 cut(s)	132
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	2 cut(s)	32, 110
ScrFI	CCNGG	2 cut(s)	233, 415
SduI	GDGCHC	3 cut(s)	249, 297, 392
SgrAI	CRCCGGYG	1 cut(s)	140
SinI	GGWCC	1 cut(s)	132
SsiI	CCGC	9 cut(s)	28, 66, 85, 121, 124, 127, 138, 199, 346
SstI	GAGCTC	2 cut(s)	249, 392
StyD4I	CCNGG	2 cut(s)	231, 413
TaiI	ACGT	2 cut(s)	171, 315
TaqI	TCGA	3 cut(s)	243, 324, 392
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	2 cut(s)	126, 129
TseFI	GTSAC	2 cut(s)	308, 368
TseI	GCWGC	2 cut(s)	220, 355
Tsp45I	GTSAC	2 cut(s)	308, 368
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.