AT1G79130

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009941
Physical Location & Seq
Forward (+)
29771218 .. 29771887
670 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79130.1

Sequence Viewer

Length: 405 bp
ATGAAGCCTCTGATTCGACGTCTGTCACGAATCGCAGACTCATCCTCCTGCAACCGAAATCGCAGCGGCGATATCCATCACCCGACGTCAACGTACTCCTCTTCAGTTTTCTTGGTCAAGCGAGCAACCGTCGCGTCGAGTGTTCCTTCCGGTCACGTTCCCGTCAACGTAGGCGAAGATAAGGAGAGGTTCGTGGTGAGTGCAGAGCTGCTGAATCATCCTGTTTTCGTTGGATTGCTGAATCGATCAGCTCAAGAATACGGATACACTCAGAAAGGAGTTCTTCATATTCCTTGTAACGTATTCGTGTTCGAGCAGGTTGTAGAGTCTCTCCGATCTGGCATCGCTGATGATACATCGGAGCTCATTGCATCGTTATCTGGTGAAGATGTATCTACAGAGTAG

Protein Analysis

134

Amino Acids

14.6

Weight (kDa)

6.19

Isoelectric Point (pI)

51.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 29 - 111 6.4e-26 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 22, 89
Acc36I ACCTGC 1 cut(s) 307
AccII CGCG 1 cut(s) 134
AciI CCGC 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 87
AcyI GRCGYC 2 cut(s) 19, 86
AfaI GTAC 1 cut(s) 95
AluBI AGCT 3 cut(s) 208, 251, 364
AluI AGCT 3 cut(s) 208, 251, 364
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 333
ApeKI GCWGC 2 cut(s) 63, 208
AsuHPI GGTGA 3 cut(s) 71, 208, 395
BanII GRGCYC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 75, 195
BccI CCATC 1 cut(s) 84
BciVI GTATCC 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 396
BfuAI ACCTGC 1 cut(s) 307
BfuI GTATCC 1 cut(s) 257
BisI GCNGC 3 cut(s) 64, 67, 209
BlsI GCNGC 3 cut(s) 65, 68, 210
BmsI GCATC 2 cut(s) 351, 380
BoxI GACNNNNGTC 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 237
Bsa29I ATCGAT 1 cut(s) 244
BsaBI GATNNNNATC 1 cut(s) 75
BsaHI GRCGYC 2 cut(s) 19, 86
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bse3DI GCAATG 1 cut(s) 366
Bse8I GATNNNNATC 1 cut(s) 75
BseCI ATCGAT 1 cut(s) 244
BseGI GGATG 2 cut(s) 41, 217
BseJI GATNNNNATC 1 cut(s) 75
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 2 cut(s) 75, 195
BsgI GTGCAG 1 cut(s) 222
Bsh1236I CGCG 1 cut(s) 134
BshVI ATCGAT 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 2 cut(s) 245, 335
BspACI CCGC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 283
BspDI ATCGAT 1 cut(s) 244
BspFNI CGCG 1 cut(s) 134
BspMI ACCTGC 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 366
BssMI GATC 2 cut(s) 245, 335
BssNI GRCGYC 2 cut(s) 19, 86
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 106
BstACI GRCGYC 2 cut(s) 19, 86
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 41, 217
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 2 cut(s) 248, 338
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 2 cut(s) 245, 335
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstPAI GACNNNNGTC 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 396
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 75, 195
Bsu15I ATCGAT 1 cut(s) 244
BsuI GTATCC 1 cut(s) 257
BsuTUI ATCGAT 1 cut(s) 244
BtgZI GCGATG 1 cut(s) 328
BtsCI GGATG 2 cut(s) 41, 217
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 123
ClaI ATCGAT 1 cut(s) 244
CseI GACGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 94
CviJI RGCY 4 cut(s) 7, 208, 251, 364
CviKI_1 RGCY 4 cut(s) 7, 208, 251, 364
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 247, 337
DpnII GATC 2 cut(s) 245, 335
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 366
Eco32I GATATC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 364
EcoRV GATATC 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 366
FaiI YATR 1 cut(s) 288
FalI AAGNNNNNCTT 2 cut(s) 267, 299
Fnu4HI GCNGC 3 cut(s) 64, 67, 209
FokI GGATG 2 cut(s) 28, 204
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 3 cut(s) 64, 67, 209
GluI GCNGC 3 cut(s) 64, 67, 209
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 123
Hin1I GRCGYC 2 cut(s) 19, 86
HincII GTYRAC 2 cut(s) 90, 166
HindII GTYRAC 2 cut(s) 90, 166
HinfI GANTC 6 cut(s) 13, 30, 38, 214, 241, 326
HpaII CCGG 1 cut(s) 150
HphI GGTGA 3 cut(s) 71, 208, 395
Hpy166II GTNNAC 2 cut(s) 90, 166
Hpy188I TCNGA 4 cut(s) 12, 273, 335, 361
Hpy188III TCNNGA 2 cut(s) 27, 254
Hpy8I GTNNAC 2 cut(s) 90, 166
Hpy99I CGWCG 4 cut(s) 21, 88, 134, 139
HpyAV CCTTC 1 cut(s) 156
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 6 cut(s) 19, 86, 92, 156, 168, 300
HpyCH4V TGCA 3 cut(s) 51, 203, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 6 cut(s) 19, 86, 92, 156, 168, 300
Hsp92I GRCGYC 2 cut(s) 19, 86
Kzo9I GATC 2 cut(s) 245, 335
LmnI GCTCC 1 cut(s) 361
LpnPI CCDG 6 cut(s) 61, 163, 234, 302, 324, 366
Lsp1109I GCAGC 2 cut(s) 75, 195
LweI GCATC 2 cut(s) 351, 380
MaeII ACGT 6 cut(s) 19, 86, 92, 156, 168, 300
MaeIII GTNAC 3 cut(s) 24, 152, 296
MalI GATC 2 cut(s) 247, 337
MboI GATC 2 cut(s) 245, 335
MboII GAAGA 4 cut(s) 93, 188, 275, 398
MhlI GDGCHC 1 cut(s) 366
MlyI GAGTC 2 cut(s) 32, 335
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 4 cut(s) 18, 55, 109, 180
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 2 cut(s) 245, 335
NmuCI GTSAC 2 cut(s) 24, 152
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PfeI GAWTC 4 cut(s) 13, 30, 214, 241
PkrI GCNGC 3 cut(s) 65, 68, 210
PleI GAGTC 2 cut(s) 32, 334
PpsI GAGTC 2 cut(s) 32, 334
PshAI GACNNNNGTC 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 366
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SacI GAGCTC 1 cut(s) 366
SatI GCNGC 3 cut(s) 64, 67, 209
Sau3AI GATC 2 cut(s) 245, 335
SchI GAGTC 2 cut(s) 32, 335
SduI GDGCHC 1 cut(s) 366
SfaNI GCATC 2 cut(s) 351, 380
SfcI CTRYAG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 252
SmoI CTYRAG 1 cut(s) 252
SsiI CCGC 1 cut(s) 66
SstI GAGCTC 1 cut(s) 366
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 6 cut(s) 22, 89, 95, 159, 171, 303
TaqI TCGA 4 cut(s) 16, 137, 244, 312
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 4 cut(s) 13, 30, 214, 241
TseFI GTSAC 2 cut(s) 24, 152
TseI GCWGC 2 cut(s) 63, 208
Tsp45I GTSAC 2 cut(s) 24, 152
TspDTI ATGAA 2 cut(s) 17, 275
TspGWI ACGGA 1 cut(s) 276
ZraI GACGTC 2 cut(s) 20, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.