Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009941

Physical Location & Seq

Genomic Coordinates Forward (+)

21017311 .. 21018122

Gene Structure 812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G56150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAAACAACTAATCCGCCGTTTATCGCGTGTCGCGGACTCAACACAGTATAGCCTCCTCCGGTCTGAATCCCAGCGTGGCCGCACCAAGAAGGAGAAACACAAATCTTGGGTTCCCGAGGGGCACGTGCCTGTTTACGTAGGCCACGAGATGGAGCGGTTCGTGGTGAATGCGGAGCTGCTCAACCACCCCGTTTTCGTAGCGTTGCTGAAGCAGTCGGCTCAAGAGTATGGATACGAGCAACAAGGAGTGCTTCGCATCCCTTGCCACGTGCTTGTGTTCGAACGCATCTTGGAGTCTCTCCGTCTCGGACTCGCCGATCGAGTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009914 GO:0009956 GO:0009958 GO:0010817 GO:0022622 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0090057 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

110

Amino Acids

12.78

Weight (kDa)

9.66

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	7 - 101	2.9e-29	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16510 AT1G56150 AT1G79130 AT3G12830
fragaria_vesca	FvH4_3g15390
malus_domestica	MD05G1223400.v1.1 MD10G1204800.v1.1
prunus_persica	Prupe.4G136800_v2.0.a1
pyrus_communis	pycom05g20630
rosa_chinensis	RchiOBHm_Chr1g0324921 RchiOBHm_Chr5g0025871
rosa_laevigata	RLG00000017123
rosa_multiflora	Rmu_sc0000968.1_g000024
rosa_roxburghii	Rroxscaffold_1G00073720 Rroxscaffold_7G00170940 Rroxscaffold_7G00180320
rosa_rugosa	Rorug01G0048500 Rorug05G0089100 Rorug06G0194900
rosa_samantha	Rh2BG576100
rosa_wichuraiana	Rw5G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	151
AccBSI	CCGCTC	1 cut(s)	157
AccII	CGCG	2 cut(s)	28, 35
AciI	CCGC	5 cut(s)	16, 35, 82, 157, 173
AcoI	YGGCCR	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	230
AcvI	CACGTG	2 cut(s)	127, 271
AfiI	CCNNNNNNNGG	1 cut(s)	151
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw26I	GTCTC	2 cut(s)	303, 311
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	2 cut(s)	79, 142
ApeKI	GCWGC	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	178
AsuII	TTCGAA	1 cut(s)	282
AvaI	CYCGRG	1 cut(s)	116
BaeGI	GKGCMC	1 cut(s)	126
BauI	CACGAG	1 cut(s)	146
BbrPI	CACGTG	2 cut(s)	127, 271
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	1 cut(s)	145
BceAI	ACGGC	1 cut(s)	3
BciVI	GTATCC	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	303, 311
BfuI	GTATCC	1 cut(s)	227
BisI	GCNGC	2 cut(s)	82, 179
BlsI	GCNGC	2 cut(s)	83, 180
BmeT110I	CYCGRG	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	114
BmsI	GCATC	2 cut(s)	267, 297
Bpu14I	TTCGAA	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	207
BsaAI	YACGTR	3 cut(s)	127, 139, 271
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	165
BseYI	CCCAGC	1 cut(s)	72
Bsh1236I	CGCG	2 cut(s)	28, 35
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	2 cut(s)	81, 144
BsiEI	CGRYCG	1 cut(s)	322
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	2 cut(s)	303, 311
BsmBI	CGTCTC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	81, 144
BsoBI	CYCGRG	1 cut(s)	116
Bsp119I	TTCGAA	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	5 cut(s)	16, 35, 82, 157, 173
BspANI	GGCC	2 cut(s)	81, 144
BspFNI	CGCG	2 cut(s)	28, 35
BspLI	GGNNCC	1 cut(s)	114
BspT104I	TTCGAA	1 cut(s)	282
BsrBI	CCGCTC	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	1 cut(s)	319
BssSI	CACGAG	1 cut(s)	146
Bst2BI	CACGAG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	264
BstBAI	YACGTR	3 cut(s)	127, 139, 271
BstBI	TTCGAA	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	258
BstFNI	CGCG	2 cut(s)	28, 35
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	2 cut(s)	303, 311
BstMBI	GATC	1 cut(s)	319
BstMCI	CGRYCG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	126
BstSNI	TACGTA	1 cut(s)	139
BstUI	CGCG	2 cut(s)	28, 35
BstV1I	GCAGC	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	81, 144
BtsCI	GGATG	1 cut(s)	258
CviAII	CATG	1 cut(s)	330
CviJI	RGCY	5 cut(s)	54, 81, 144, 178, 221
CviKI_1	RGCY	5 cut(s)	54, 81, 144, 178, 221
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	5
Eco105I	TACGTA	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	230
Eco72I	CACGTG	2 cut(s)	127, 271
Eco88I	CYCGRG	1 cut(s)	116
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	1 cut(s)	333
FaiI	YATR	3 cut(s)	51, 231, 331
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FatI	CATG	1 cut(s)	329
Fnu4HI	GCNGC	2 cut(s)	82, 179
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	82, 179
GluI	GCNGC	2 cut(s)	82, 179
GsaI	CCCAGC	1 cut(s)	76
HaeIII	GGCC	2 cut(s)	81, 144
HapII	CCGG	1 cut(s)	61
Hin1II	CATG	1 cut(s)	333
HinfI	GANTC	5 cut(s)	38, 68, 296, 312, 324
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	67, 311
Hpy188III	TCNNGA	2 cut(s)	116, 224
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	3 cut(s)	126, 138, 270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpySE526I	ACGT	3 cut(s)	126, 138, 270
Hsp92II	CATG	1 cut(s)	333
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	2 cut(s)	154, 175
LpnPI	CCDG	3 cut(s)	74, 86, 144
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	2 cut(s)	267, 297
MaeII	ACGT	3 cut(s)	126, 138, 270
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	1 cut(s)	321
MbiI	CCGCTC	1 cut(s)	157
MboI	GATC	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	126
MlyI	GAGTC	4 cut(s)	32, 305, 306, 333
MnlI	CCTC	3 cut(s)	65, 68, 112
MspI	CCGG	1 cut(s)	61
Mva1269I	GAATGC	1 cut(s)	175
MvnI	CGCG	2 cut(s)	28, 35
MwoI	GCNNNNNNNGC	1 cut(s)	264
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	1 cut(s)	333
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	325
NspV	TTCGAA	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 315
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	83, 180
Ple19I	CGATCG	1 cut(s)	322
PleI	GAGTC	4 cut(s)	32, 304, 306, 332
PmaCI	CACGTG	2 cut(s)	127, 271
PmlI	CACGTG	2 cut(s)	127, 271
PpsI	GAGTC	4 cut(s)	32, 304, 306, 332
Ppu21I	YACGTR	3 cut(s)	127, 139, 271
PspCI	CACGTG	2 cut(s)	127, 271
PspFI	CCCAGC	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	114
PvuI	CGATCG	1 cut(s)	322
SatI	GCNGC	2 cut(s)	82, 179
Sau3AI	GATC	1 cut(s)	319
SchI	GAGTC	4 cut(s)	32, 305, 306, 333
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	4 cut(s)	129, 141, 180, 273
SfaNI	GCATC	2 cut(s)	267, 297
SfuI	TTCGAA	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
SnaBI	TACGTA	1 cut(s)	139
SsiI	CCGC	5 cut(s)	16, 35, 82, 157, 173
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	3 cut(s)	129, 141, 273
TaqI	TCGA	2 cut(s)	282, 322
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	293
Van91I	CCANNNNNTGG	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.