Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009941

Physical Location & Seq

Genomic Coordinates Reverse (-)

79214655 .. 79215355

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG576100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCCCTCACGGCAACACCACAACAACTCAGAGACCAGAGTCCCAGAGGGACATGTGCCGGTGTACATCGGCAACAAAATGGAGCGGTCGTCGTCTCCGCCGAGCTCCTCAACAAGCTGGCGCAGGAGTACGACTACAAGCAGCGAGGCGTGCTCCAGATTCTCTGCCACGTGGTGGTGTTCGAGTGCGTCCTCGAGACGCTCCGACTCGGATGCATCACACAGTTGAGTGACATCAACGACCTCTTCTACTCGCTCTCCAATGATCCTCACTTCATCTACGCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009914 GO:0009956 GO:0009958 GO:0010817 GO:0022622 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0090057 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

96

Amino Acids

10.75

Weight (kDa)

5.8

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16510 AT1G56150 AT1G79130 AT3G12830
fragaria_vesca	FvH4_3g15390
malus_domestica	MD05G1223400.v1.1 MD10G1204800.v1.1
prunus_persica	Prupe.4G136800_v2.0.a1
pyrus_communis	pycom05g20630
rosa_chinensis	RchiOBHm_Chr1g0324921 RchiOBHm_Chr5g0025871
rosa_laevigata	RLG00000017123
rosa_multiflora	Rmu_sc0000968.1_g000024
rosa_roxburghii	Rroxscaffold_1G00073720 Rroxscaffold_7G00170940 Rroxscaffold_7G00180320
rosa_rugosa	Rorug01G0048500 Rorug05G0089100 Rorug06G0194900
rosa_samantha	Rh2BG576100
rosa_wichuraiana	Rw5G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	175
AccBSI	CCGCTC	1 cut(s)	86
AciI	CCGC	2 cut(s)	86, 99
AclWI	GGATC	1 cut(s)	260
AcvI	CACGTG	1 cut(s)	172
AdeI	CACNNNGTG	1 cut(s)	175
AfaI	GTAC	2 cut(s)	66, 131
AfiI	CCNNNNNNNGG	1 cut(s)	175
AflIII	ACRYGT	1 cut(s)	53
AluBI	AGCT	2 cut(s)	106, 118
AluI	AGCT	2 cut(s)	106, 118
Alw21I	GWGCWC	2 cut(s)	108, 156
Alw26I	GTCTC	3 cut(s)	27, 100, 191
AlwI	GGATC	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	4
AvaI	CYCGRG	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	108
BbrPI	CACGTG	1 cut(s)	172
Bbv12I	GWGCWC	2 cut(s)	108, 156
BbvI	GCAGC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	27
BcgI	CGANNNNNNTGC	2 cut(s)	195, 229
BcoDI	GTCTC	3 cut(s)	27, 100, 191
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	2 cut(s)	203, 225
BoxI	GACNNNNGTC	1 cut(s)	39
BplI	GAGNNNNNCTC	2 cut(s)	138, 170
BpmI	CTGGAG	1 cut(s)	140
BsaAI	YACGTR	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	27
BsaXI	ACNNNNNCTCC	4 cut(s)	75, 105, 242, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse118I	RCCGGY	1 cut(s)	59
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	154
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	108, 156
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	2 cut(s)	27, 64
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	3 cut(s)	27, 100, 191
BsmBI	CGTCTC	2 cut(s)	100, 191
BsmFI	GGGAC	2 cut(s)	27, 64
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	27
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	108, 156
Bsp1407I	TGTACA	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	2 cut(s)	86, 99
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	42
BspPI	GGATC	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	27
BsrBI	CCGCTC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	59
BsrGI	TGTACA	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	59
BssMI	GATC	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	225
Bst6I	CTCTTC	1 cut(s)	251
BstAUI	TGTACA	1 cut(s)	64
BstBAI	YACGTR	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	120, 152
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	3 cut(s)	27, 100, 191
BstMBI	GATC	1 cut(s)	265
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 151
BstNSI	RCATGY	1 cut(s)	57
BstPAI	GACNNNNGTC	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	218
Cac8I	GCNNGC	2 cut(s)	120, 152
CfoI	GCGC	1 cut(s)	124
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	2 cut(s)	178, 208
Csp6I	GTAC	2 cut(s)	65, 130
CviAII	CATG	1 cut(s)	54
CviJI	RGCY	3 cut(s)	5, 106, 118
CviKI_1	RGCY	3 cut(s)	5, 106, 118
CviQI	GTAC	2 cut(s)	65, 130
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
DraIII	CACNNNGTG	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
EciI	GGCGGA	1 cut(s)	88
Ecl136II	GAGCTC	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	106
Eco72I	CACGTG	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	106
EcoT22I	ATGCAT	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	108
Esp3I	CGTCTC	2 cut(s)	100, 191
FaeI	CATG	1 cut(s)	57
FaiI	YATR	1 cut(s)	55
FaqI	GGGAC	2 cut(s)	27, 64
FatI	CATG	1 cut(s)	53
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	1 cut(s)	225
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	143
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	60
HgaI	GACGC	2 cut(s)	178, 208
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	1 cut(s)	57
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HinfI	GANTC	3 cut(s)	40, 160, 207
HpaII	CCGG	1 cut(s)	60
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	3 cut(s)	32, 206, 212
Hpy188III	TCNNGA	2 cut(s)	157, 196
Hpy8I	GTNNAC	1 cut(s)	65
Hpy99I	CGWCG	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 151
HpyF3I	CTNAG	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	57
HspAI	GCGC	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	4 cut(s)	83, 111, 159, 207
LpnPI	CCDG	6 cut(s)	50, 58, 73, 104, 110, 170
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	2 cut(s)	203, 225
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	1 cut(s)	267
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	1 cut(s)	265
MboII	GAAGA	1 cut(s)	238
MhlI	GDGCHC	2 cut(s)	108, 156
MluCI	AATT	1 cut(s)	286
MlyI	GAGTC	2 cut(s)	49, 201
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	7 cut(s)	17, 41, 119, 140, 203, 254, 279
Mph1103I	ATGCAT	1 cut(s)	218
MseI	TTAA	1 cut(s)	289
MspI	CCGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	11, 151
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	57
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	230
NsiI	ATGCAT	1 cut(s)	218
NspI	RCATGY	1 cut(s)	57
PaeR7I	CTCGAG	1 cut(s)	194
PciI	ACATGT	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	160
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	144
PleI	GAGTC	2 cut(s)	48, 201
PmaCI	CACGTG	1 cut(s)	172
PmlI	CACGTG	1 cut(s)	172
PpsI	GAGTC	2 cut(s)	48, 201
Ppu21I	YACGTR	1 cut(s)	172
PscI	ACATGT	1 cut(s)	53
PshAI	GACNNNNGTC	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	108
PspCI	CACGTG	1 cut(s)	172
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	2 cut(s)	66, 131
RsaNI	GTAC	2 cut(s)	65, 130
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	289
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	49, 201
SduI	GDGCHC	2 cut(s)	108, 156
SetI	ASST	4 cut(s)	108, 120, 174, 246
SfaNI	GCATC	2 cut(s)	203, 225
Sfr274I	CTCGAG	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	286
SsiI	CCGC	2 cut(s)	86, 99
SstI	GAGCTC	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	225
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	2 cut(s)	183, 195
TasI	AATT	1 cut(s)	286
TatI	WGTACW	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	289
Tru9I	TTAA	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	265
Van91I	CCANNNNNTGG	1 cut(s)	175
XceI	RCATGY	1 cut(s)	57
XhoI	CTCGAG	1 cut(s)	194
Zsp2I	ATGCAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.