Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009941

Physical Location & Seq

Genomic Coordinates Reverse (-)

4078651 .. 4079627

Gene Structure 977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAAGCAACTAATCCGTCGTCTCTCTCGCGTCGCTGATTCCGCTCAATACAGTCTCCTCCGTTCCGATTCACAGCGACCTAGCCGCCGTTCCGAATCCTTCCTCCGTTCTTCGGTGACTCGCCGCTCAAAGAAGCAAACCTCCTCTGTTCCCGAAGGACACGTACCGGTCTACGTAGGTGACGAGATGGAGAGGTTCGTCGTTAGCGCGGAGCTACTTAACCATCCGGTTTTCATCGGTTTACTAAACCGATCTGCTCAAGAGTATGGTTACGAGCAAAAAGGAGTTCTACAAATCCCTTGCCATGTCCTTGTCTTCGAACGAATCATGGAATCGCTTCGTCTTGGACTTCCGGTACCGATTGATGTTCAGGATCTAATCGGTGACGGGACTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009914 GO:0009956 GO:0009958 GO:0010817 GO:0022622 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0090057 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

132

Amino Acids

14.97

Weight (kDa)

9.29

Isoelectric Point (pI)

78.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	7 - 113	2.4e-29	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16510 AT1G56150 AT1G79130 AT3G12830
fragaria_vesca	FvH4_3g15390
malus_domestica	MD05G1223400.v1.1 MD10G1204800.v1.1
prunus_persica	Prupe.4G136800_v2.0.a1
pyrus_communis	pycom05g20630
rosa_chinensis	RchiOBHm_Chr1g0324921 RchiOBHm_Chr5g0025871
rosa_laevigata	RLG00000017123
rosa_multiflora	Rmu_sc0000968.1_g000024
rosa_roxburghii	Rroxscaffold_1G00073720 Rroxscaffold_7G00170940 Rroxscaffold_7G00180320
rosa_rugosa	Rorug01G0048500 Rorug05G0089100 Rorug06G0194900
rosa_samantha	Rh2BG576100
rosa_wichuraiana	Rw5G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	355
AccB1I	GGYRCC	1 cut(s)	355
AccBSI	CCGCTC	2 cut(s)	44, 126
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	2 cut(s)	30, 209
AciI	CCGC	4 cut(s)	42, 85, 124, 209
AclWI	GGATC	1 cut(s)	381
AfaI	GTAC	2 cut(s)	165, 357
AfiI	CCNNNNNNNGG	1 cut(s)	112
AflIII	ACRYGT	1 cut(s)	160
AgeI	ACCGGT	1 cut(s)	166
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw26I	GTCTC	2 cut(s)	26, 59
AlwI	GGATC	1 cut(s)	381
AsiGI	ACCGGT	1 cut(s)	166
Asp700I	GAANNNNTTC	1 cut(s)	336
Asp718I	GGTACC	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	209
AsuHPI	GGTGA	3 cut(s)	127, 191, 395
AsuII	TTCGAA	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	355
BarI	GAAGNNNNNNTAC	2 cut(s)	147, 179
BbsI	GAAGAC	1 cut(s)	307
BccI	CCATC	2 cut(s)	181, 231
BceAI	ACGGC	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	26, 59
BfaI	CTAG	1 cut(s)	81
BisI	GCNGC	2 cut(s)	85, 124
BlsI	GCNGC	2 cut(s)	86, 125
BmiI	GGNNCC	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	307
Bpu14I	TTCGAA	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	243
BsaAI	YACGTR	2 cut(s)	163, 175
BsaWI	WCCGGW	3 cut(s)	166, 226, 352
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	166
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseRI	GAGGAG	2 cut(s)	47, 133
Bsh1236I	CGCG	2 cut(s)	30, 209
BshNI	GGYRCC	1 cut(s)	355
BshTI	ACCGGT	1 cut(s)	166
BsiSI	CCGG	3 cut(s)	167, 227, 353
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	2 cut(s)	26, 59
BsmBI	CGTCTC	1 cut(s)	26
Bsp119I	TTCGAA	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	251, 373
BspACI	CCGC	4 cut(s)	42, 85, 124, 209
BspFNI	CGCG	2 cut(s)	30, 209
BspLI	GGNNCC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	381
BspT104I	TTCGAA	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	355
BsrBI	CCGCTC	2 cut(s)	44, 126
BsrFI	RCCGGY	1 cut(s)	166
BssAI	RCCGGY	1 cut(s)	166
BssMI	GATC	2 cut(s)	251, 373
Bst4CI	ACNGT	1 cut(s)	53
BstBAI	YACGTR	2 cut(s)	163, 175
BstBI	TTCGAA	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	2 cut(s)	30, 209
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	2 cut(s)	254, 376
BstMAI	GTCTC	2 cut(s)	26, 59
BstMBI	GATC	2 cut(s)	251, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstSNI	TACGTA	1 cut(s)	175
BstUI	CGCG	2 cut(s)	30, 209
BstV2I	GAAGAC	1 cut(s)	307
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BtsCI	GGATG	1 cut(s)	223
CfoI	GCGC	1 cut(s)	209
Cfr10I	RCCGGY	1 cut(s)	166
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	164, 356
CspAI	ACCGGT	1 cut(s)	166
CviAII	CATG	2 cut(s)	305, 328
CviJI	RGCY	2 cut(s)	84, 214
CviKI_1	RGCY	2 cut(s)	84, 214
CviQI	GTAC	2 cut(s)	164, 356
DpnI	GATC	2 cut(s)	253, 375
DpnII	GATC	2 cut(s)	251, 373
Eco105I	TACGTA	1 cut(s)	175
Esp3I	CGTCTC	1 cut(s)	26
FaeI	CATG	2 cut(s)	308, 331
FaiI	YATR	3 cut(s)	267, 306, 329
FatI	CATG	2 cut(s)	304, 327
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	2 cut(s)	85, 124
FokI	GGATG	1 cut(s)	210
Fsp4HI	GCNGC	2 cut(s)	85, 124
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	2 cut(s)	85, 124
HapII	CCGG	3 cut(s)	167, 227, 353
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	2 cut(s)	308, 331
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HinfI	GANTC	6 cut(s)	38, 68, 95, 118, 324, 332
HpaII	CCGG	3 cut(s)	167, 227, 353
HphI	GGTGA	3 cut(s)	127, 191, 395
Hpy166II	GTNNAC	2 cut(s)	172, 242
Hpy188I	TCNGA	2 cut(s)	67, 94
Hpy188III	TCNNGA	3 cut(s)	152, 260, 371
Hpy8I	GTNNAC	2 cut(s)	172, 242
Hpy99I	CGWCG	3 cut(s)	21, 35, 203
HpyAV	CCTTC	2 cut(s)	109, 149
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	2 cut(s)	162, 174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpySE526I	ACGT	2 cut(s)	162, 174
Hsp92II	CATG	2 cut(s)	308, 331
HspAI	GCGC	1 cut(s)	207
KpnI	GGTACC	1 cut(s)	359
Kzo9I	GATC	2 cut(s)	251, 373
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	4 cut(s)	180, 240, 356, 366
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	2 cut(s)	162, 174
MaeIII	GTNAC	4 cut(s)	115, 179, 269, 383
MalI	GATC	2 cut(s)	253, 375
MbiI	CCGCTC	2 cut(s)	44, 126
MboI	GATC	2 cut(s)	251, 373
MboII	GAAGA	2 cut(s)	102, 307
MflI	RGATCY	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	112
MnlI	CCTC	5 cut(s)	68, 113, 151, 154, 186
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	1 cut(s)	219
MspI	CCGG	3 cut(s)	167, 227, 353
MvnI	CGCG	2 cut(s)	30, 209
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeII	GATC	2 cut(s)	251, 373
NlaIII	CATG	2 cut(s)	308, 331
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	3 cut(s)	115, 179, 383
NspV	TTCGAA	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	5 cut(s)	38, 68, 95, 324, 332
PinAI	ACCGGT	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	86, 125
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
Ppu21I	YACGTR	2 cut(s)	163, 175
PspN4I	GGNNCC	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	2 cut(s)	165, 357
RsaNI	GTAC	2 cut(s)	164, 356
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	2 cut(s)	85, 124
Sau3AI	GATC	2 cut(s)	251, 373
SchI	GAGTC	1 cut(s)	112
SetI	ASST	7 cut(s)	82, 143, 165, 177, 181, 197, 216
SfuI	TTCGAA	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
SnaBI	TACGTA	1 cut(s)	175
SsiI	CCGC	4 cut(s)	42, 85, 124, 209
SspMI	CTAG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	2 cut(s)	165, 177
TaqI	TCGA	1 cut(s)	318
TauI	GCSGC	2 cut(s)	87, 126
TfiI	GAWTC	5 cut(s)	38, 68, 95, 324, 332
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseFI	GTSAC	3 cut(s)	115, 179, 383
Tsp45I	GTSAC	3 cut(s)	115, 179, 383
TspDTI	ATGAA	2 cut(s)	17, 223
TspGWI	ACGGA	3 cut(s)	5, 50, 95
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.