Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000968.1

Orthogroup ID

OG0009941

Physical Location & Seq

Genomic Coordinates Reverse (-)

146178 .. 146630

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000968.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgaagcaattgatccgacgtctctcccgcgtcgccgactcgtcgcagtactgcctcctccgcagctcggattccaccgccgcgtccgctgcctcctcgaattcccggcctcgccggagcgagtcgttcagagtcctgaagctccggcgacgcaggagcaacacggagaccggagtccccgagggacacgtgccggtgtacgtcggcgacgagatggagcggttcgtcgtctccgccgagctcctcaaccacccggtgttcgtcgagctcctgaacaagtcggcgcaggagtacggctacgagcagcgcggcgtgctccggattccctgccacgtggtggtgttcgagcgcgtcctcgagacgctccggctcggacgcgccgcgccgtcgagtgacatcaacgacctcctcggctcgctctcagaggatcgtcacttcatctacgccaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009914 GO:0009956 GO:0009958 GO:0010817 GO:0022622 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0090057 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

150

Amino Acids

16.99

Weight (kDa)

9.38

Isoelectric Point (pI)

73.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16510 AT1G56150 AT1G79130 AT3G12830
fragaria_vesca	FvH4_3g15390
malus_domestica	MD05G1223400.v1.1 MD10G1204800.v1.1
prunus_persica	Prupe.4G136800_v2.0.a1
pyrus_communis	pycom05g20630
rosa_chinensis	RchiOBHm_Chr1g0324921 RchiOBHm_Chr5g0025871
rosa_laevigata	RLG00000017123
rosa_multiflora	Rmu_sc0000968.1_g000024
rosa_roxburghii	Rroxscaffold_1G00073720 Rroxscaffold_7G00170940 Rroxscaffold_7G00180320
rosa_rugosa	Rorug01G0048500 Rorug05G0089100 Rorug06G0194900
rosa_samantha	Rh2BG576100
rosa_wichuraiana	Rw5G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	22
AccB7I	CCANNNNNTGG	1 cut(s)	337
AccBSI	CCGCTC	1 cut(s)	220
AccII	CGCG	6 cut(s)	30, 83, 309, 351, 378, 383
AccIII	TCCGGA	1 cut(s)	318
AciI	CCGC	9 cut(s)	28, 61, 78, 81, 87, 220, 234, 309, 381
AclWI	GGATC	2 cut(s)	7, 435
AcsI	RAATTY	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	158
AcvI	CACGTG	2 cut(s)	190, 334
AcyI	GRCGYC	1 cut(s)	19
AdeI	CACNNNGTG	2 cut(s)	256, 337
AfaI	GTAC	3 cut(s)	50, 200, 293
AfiI	CCNNNNNNNGG	2 cut(s)	67, 337
AflIII	ACRYGT	1 cut(s)	187
AluBI	AGCT	4 cut(s)	66, 142, 241, 268
AluI	AGCT	4 cut(s)	66, 142, 241, 268
Alw21I	GWGCWC	3 cut(s)	243, 270, 318
Alw26I	GTCTC	4 cut(s)	26, 161, 235, 353
AlwI	GGATC	2 cut(s)	7, 435
Ama87I	CYCGRG	2 cut(s)	179, 356
Aor13HI	TCCGGA	1 cut(s)	318
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	3 cut(s)	63, 89, 304
ApoI	RAATTY	1 cut(s)	100
AspLEI	GCGC	5 cut(s)	286, 309, 351, 380, 385
AsuC2I	CCSGG	2 cut(s)	106, 254
AvaI	CYCGRG	2 cut(s)	179, 356
BanII	GRGCYC	2 cut(s)	243, 270
BbrPI	CACGTG	2 cut(s)	190, 334
Bbv12I	GWGCWC	3 cut(s)	243, 270, 318
BbvI	GCAGC	3 cut(s)	75, 76, 316
BccI	CCATC	1 cut(s)	208
BceAI	ACGGC	2 cut(s)	310, 370
BcnI	CCSGG	2 cut(s)	106, 254
BcoDI	GTCTC	4 cut(s)	26, 161, 235, 353
BisI	GCNGC	6 cut(s)	64, 81, 90, 305, 310, 381
BlsI	GCNGC	6 cut(s)	65, 82, 91, 306, 311, 382
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	106, 254
BmeT110I	CYCGRG	2 cut(s)	179, 356
BmrFI	CCNGG	2 cut(s)	106, 254
BoxI	GACNNNNGTC	1 cut(s)	173
BpuMI	CCSGG	2 cut(s)	106, 254
BsaAI	YACGTR	2 cut(s)	190, 334
BsaHI	GRCGYC	1 cut(s)	19
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	180, 409
BsaWI	WCCGGW	2 cut(s)	170, 318
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 337
Bse118I	RCCGGY	1 cut(s)	193
BseAI	TCCGGA	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	180, 409
BseLI	CCNNNNNNNGG	2 cut(s)	67, 337
BseMII	CTCAG	1 cut(s)	435
BseRI	GAGGAG	4 cut(s)	47, 85, 233, 398
BseXI	GCAGC	3 cut(s)	75, 76, 316
Bsh1236I	CGCG	6 cut(s)	30, 83, 309, 351, 378, 383
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	3 cut(s)	243, 270, 318
BsiHKCI	CYCGRG	2 cut(s)	179, 356
BsiSI	CCGG	8 cut(s)	106, 115, 145, 171, 194, 254, 319, 367
BslFI	GGGAC	2 cut(s)	161, 198
BslI	CCNNNNNNNGG	2 cut(s)	67, 337
BsmAI	GTCTC	4 cut(s)	26, 161, 235, 353
BsmBI	CGTCTC	3 cut(s)	26, 235, 353
BsmFI	GGGAC	2 cut(s)	161, 198
BsnI	GGCC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	2 cut(s)	179, 356
Bsp1286I	GDGCHC	3 cut(s)	243, 270, 318
Bsp13I	TCCGGA	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	12, 427
BspACI	CCGC	9 cut(s)	28, 61, 78, 81, 87, 220, 234, 309, 381
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	434
BspEI	TCCGGA	1 cut(s)	318
BspFNI	CGCG	6 cut(s)	30, 83, 309, 351, 378, 383
BspPI	GGATC	2 cut(s)	7, 435
BspTNI	GGTCTC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	180, 409
BssMI	GATC	2 cut(s)	12, 427
BssNI	GRCGYC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	19
BstBAI	YACGTR	2 cut(s)	190, 334
BstC8I	GCNNGC	2 cut(s)	314, 416
BstDEI	CTNAG	1 cut(s)	421
BstFNI	CGCG	6 cut(s)	30, 83, 309, 351, 378, 383
BstHHI	GCGC	5 cut(s)	286, 309, 351, 380, 385
BstKTI	GATC	2 cut(s)	15, 430
BstMAI	GTCTC	4 cut(s)	26, 161, 235, 353
BstMBI	GATC	2 cut(s)	12, 427
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 86, 89, 313
BstPAI	GACNNNNGTC	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	104, 252
BstUI	CGCG	6 cut(s)	30, 83, 309, 351, 378, 383
BstV1I	GCAGC	3 cut(s)	75, 76, 316
BsuRI	GGCC	1 cut(s)	109
Cac8I	GCNNGC	2 cut(s)	314, 416
CfoI	GCGC	5 cut(s)	286, 309, 351, 380, 385
Cfr10I	RCCGGY	1 cut(s)	193
CseI	GACGC	6 cut(s)	19, 72, 159, 340, 370, 384
Csp6I	GTAC	3 cut(s)	49, 199, 292
CviJI	RGCY	8 cut(s)	66, 109, 142, 241, 268, 297, 370, 414
CviKI_1	RGCY	8 cut(s)	66, 109, 142, 241, 268, 297, 370, 414
CviQI	GTAC	3 cut(s)	49, 199, 292
DdeI	CTNAG	1 cut(s)	421
DpnI	GATC	2 cut(s)	14, 429
DpnII	GATC	2 cut(s)	12, 427
DraIII	CACNNNGTG	2 cut(s)	256, 337
EciI	GGCGGA	1 cut(s)	223
Ecl136II	GAGCTC	2 cut(s)	241, 268
Eco24I	GRGCYC	2 cut(s)	243, 270
Eco31I	GGTCTC	1 cut(s)	161
Eco53kI	GAGCTC	2 cut(s)	241, 268
Eco57I	CTGAAG	1 cut(s)	158
Eco72I	CACGTG	2 cut(s)	190, 334
Eco88I	CYCGRG	2 cut(s)	179, 356
EcoICRI	GAGCTC	2 cut(s)	241, 268
EcoRI	GAATTC	1 cut(s)	100
EcoT38I	GRGCYC	2 cut(s)	243, 270
Esp3I	CGTCTC	3 cut(s)	26, 235, 353
FaqI	GGGAC	2 cut(s)	161, 198
FauI	CCCGC	1 cut(s)	35
Fnu4HI	GCNGC	6 cut(s)	64, 81, 90, 305, 310, 381
FriOI	GRGCYC	2 cut(s)	243, 270
Fsp4HI	GCNGC	6 cut(s)	64, 81, 90, 305, 310, 381
GlaI	GCGC	5 cut(s)	285, 308, 350, 379, 384
GluI	GCNGC	6 cut(s)	64, 81, 90, 305, 310, 381
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	8 cut(s)	106, 115, 145, 171, 194, 254, 319, 367
HgaI	GACGC	6 cut(s)	19, 72, 159, 340, 370, 384
HhaI	GCGC	5 cut(s)	286, 309, 351, 380, 385
Hin1I	GRCGYC	1 cut(s)	19
Hin6I	GCGC	5 cut(s)	284, 307, 349, 378, 383
HinP1I	GCGC	5 cut(s)	284, 307, 349, 378, 383
HinfI	GANTC	6 cut(s)	38, 71, 122, 132, 174, 322
HpaII	CCGG	8 cut(s)	106, 115, 145, 171, 194, 254, 319, 367
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	5 cut(s)	17, 70, 131, 374, 424
Hpy188III	TCNNGA	4 cut(s)	136, 271, 319, 358
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	9 cut(s)	21, 35, 46, 153, 206, 212, 230, 266, 391
HpyCH4IV	ACGT	4 cut(s)	19, 189, 201, 333
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 86, 89, 313
HpyF3I	CTNAG	1 cut(s)	421
HpySE526I	ACGT	4 cut(s)	19, 189, 201, 333
Hsp92I	GRCGYC	1 cut(s)	19
HspAI	GCGC	5 cut(s)	284, 307, 349, 378, 383
Kpn2I	TCCGGA	1 cut(s)	318
Kzo9I	GATC	2 cut(s)	12, 427
LmnI	GCTCC	8 cut(s)	117, 147, 156, 217, 246, 273, 321, 369
Lsp1109I	GCAGC	3 cut(s)	75, 76, 316
MaeII	ACGT	4 cut(s)	19, 189, 201, 333
MaeIII	GTNAC	2 cut(s)	392, 431
MalI	GATC	2 cut(s)	14, 429
MbiI	CCGCTC	1 cut(s)	220
MboI	GATC	2 cut(s)	12, 427
MfeI	CAATTG	1 cut(s)	8
MhlI	GDGCHC	3 cut(s)	243, 270, 318
MluCI	AATT	3 cut(s)	8, 100, 448
MlyI	GAGTC	4 cut(s)	32, 131, 141, 183
MmeI	TCCRAC	1 cut(s)	40
MroI	TCCGGA	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	8 cut(s)	106, 115, 145, 171, 194, 254, 319, 367
MspR9I	CCNGG	2 cut(s)	106, 254
MteI	GCGCNGCGC	1 cut(s)	381
MunI	CAATTG	1 cut(s)	8
MvnI	CGCG	6 cut(s)	30, 83, 309, 351, 378, 383
MwoI	GCNNNNNNNGC	4 cut(s)	60, 86, 89, 313
NciI	CCSGG	2 cut(s)	106, 254
NdeII	GATC	2 cut(s)	12, 427
NmeAIII	GCCGAG	2 cut(s)	262, 390
NmuCI	GTSAC	2 cut(s)	392, 431
PaeR7I	CTCGAG	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 234
PfeI	GAWTC	2 cut(s)	71, 322
PflMI	CCANNNNNTGG	1 cut(s)	337
PkrI	GCNGC	6 cut(s)	65, 82, 91, 306, 311, 382
PleI	GAGTC	4 cut(s)	32, 130, 140, 182
PmaCI	CACGTG	2 cut(s)	190, 334
PmlI	CACGTG	2 cut(s)	190, 334
PpsI	GAGTC	4 cut(s)	32, 130, 140, 182
Ppu21I	YACGTR	2 cut(s)	190, 334
PshAI	GACNNNNGTC	1 cut(s)	173
Psp124BI	GAGCTC	2 cut(s)	243, 270
PspCI	CACGTG	2 cut(s)	190, 334
RsaI	GTAC	3 cut(s)	50, 200, 293
RsaNI	GTAC	3 cut(s)	49, 199, 292
SacI	GAGCTC	2 cut(s)	243, 270
SatI	GCNGC	6 cut(s)	64, 81, 90, 305, 310, 381
Sau3AI	GATC	2 cut(s)	12, 427
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	4 cut(s)	32, 131, 141, 183
ScrFI	CCNGG	2 cut(s)	106, 254
SduI	GDGCHC	3 cut(s)	243, 270, 318
SetI	ASST	9 cut(s)	22, 68, 144, 192, 204, 243, 270, 336, 408
Sfr274I	CTCGAG	1 cut(s)	356
SlaI	CTCGAG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	3 cut(s)	8, 100, 448
SsiI	CCGC	9 cut(s)	28, 61, 78, 81, 87, 220, 234, 309, 381
SstI	GAGCTC	2 cut(s)	243, 270
StyD4I	CCNGG	2 cut(s)	104, 252
TaiI	ACGT	4 cut(s)	22, 192, 204, 336
TaqI	TCGA	5 cut(s)	98, 264, 345, 357, 389
TasI	AATT	3 cut(s)	8, 100, 448
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	3 cut(s)	83, 312, 383
TfiI	GAWTC	2 cut(s)	71, 322
TseFI	GTSAC	2 cut(s)	392, 431
TseI	GCWGC	3 cut(s)	63, 89, 304
Tsp45I	GTSAC	2 cut(s)	392, 431
TspDTI	ATGAA	2 cut(s)	17, 427
TspGWI	ACGGA	1 cut(s)	179
Van91I	CCANNNNNTGG	1 cut(s)	337
XapI	RAATTY	1 cut(s)	100
XhoI	CTCGAG	1 cut(s)	356
ZraI	GACGTC	1 cut(s)	20
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.