AT1G19010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002918
Physical Location & Seq
Forward (+)
6565494 .. 6567662
2169 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19010.1

Sequence Viewer

Length: 960 bp
ATGACTGACCCAGAGAAATTAACCGCCTTGAAGAAGGCTTACGCTGAGACAATACTGAACACAGCCAAGGAAGCGGCGGCGCGTGTTATGATTACTGAGAGGAAAGCGCGTGGGTATCAGCAAGAGCTTGCGTCTGTTAGAGATGAGGCTCTTCGTGCATGTCTTAGGCTTAAACAGATATATGATTCCAAGGTCAAGGAGGCAGAAATGATATCTTTGCAGAAGCAGCAAAAGATTGAGGAACTTGAAGCTCAACTTGGAGAAGCTGAAGATATAGTAGGAGAGTTAAGGACGGAGTTACGAGAATCGCGGTATCTCCTGGAGAAATTGGCAAATGGTTGTCAAACAAATCTTAGCAAAGAGGAGAAAGCCCCCAATGAAGCAGTTTCTTTAGAAGTGCGTGAGGACTCTAGCAACCACGAGAGATCAGTTGTGGCTAGTGTTATTAAACCACATATGAGTGACAGAGATCTTAGTATTAACCGGTGTTCTTATAAAGAGAATAAAGATCCTTGTCTTTATACTCTTCCTTCCATACTAAGTAGATGCAGAGAAGCTGAGGTGGTAGAAAGGAACACTATCAATGGAGATTGTGCTGATGTGGAATCACTTACAGAAGCAAGGAAGGAAGAAGCGAAAGAGAATGATATTGAGCTTTCTACTACACCTTTGTCGCCTTCTGAGAAACAGTGTATCAAATTCTCGTATAAGAGGAAGCATAATAAGGATGGAAGTAACAGCCCTGAAGGAGGAGGTTCCTCCTCACAAGATGATGATGACGACGATGAAAGCAGAAGCAGGAGACATAAGACTGGTGAGAAAGACAACGCGTATTTGGATTCTTTCACCAGCACTGAACCATCTCGTGATAGTCGACGTGTAGCTCAGGTCGCTCGTCAGCTTTTACCATTCTCAGAGAAGAAAGGGTTGCAGCAGAGCCAATGTGATGATGTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

319

Amino Acids

35.99

Weight (kDa)

5.25

Isoelectric Point (pI)

62.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 495
AccI GTMKAC 1 cut(s) 874
AccII CGCG 4 cut(s) 82, 109, 310, 830
AciI CCGC 4 cut(s) 24, 74, 77, 310
AclWI GGATC 1 cut(s) 503
AcsI RAATTY 1 cut(s) 698
AcuI CTGAAG 2 cut(s) 288, 765
AfiI CCNNNNNNNGG 1 cut(s) 749
AflIII ACRYGT 2 cut(s) 828, 877
AgeI ACCGGT 1 cut(s) 483
AgsI TTSAA 2 cut(s) 31, 248
AjiI CACGTC 1 cut(s) 878
AjnI CCWGG 1 cut(s) 318
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 7 cut(s) 127, 251, 266, 557, 655, 884, 901
AluI AGCT 7 cut(s) 127, 251, 266, 557, 655, 884, 901
Alw26I GTCTC 2 cut(s) 41, 796
AlwI GGATC 1 cut(s) 503
ApeKI GCWGC 2 cut(s) 226, 931
ApoI RAATTY 1 cut(s) 698
AsiGI ACCGGT 1 cut(s) 483
AspLEI GCGC 2 cut(s) 82, 109
AsuHPI GGTGA 2 cut(s) 827, 838
BarI GAAGNNNNNNTAC 2 cut(s) 23, 55
BauI CACGAG 2 cut(s) 419, 864
BbvCI CCTCAGC 1 cut(s) 558
BbvI GCAGC 2 cut(s) 238, 943
BccI CCATC 2 cut(s) 722, 868
BciT130I CCWGG 1 cut(s) 320
BcoDI GTCTC 2 cut(s) 41, 796
BfaI CTAG 2 cut(s) 411, 438
BglII AGATCT 1 cut(s) 469
BisI GCNGC 4 cut(s) 75, 78, 227, 932
BlsI GCNGC 4 cut(s) 76, 79, 228, 933
Bme1390I CCNGG 1 cut(s) 320
BmgBI CACGTC 1 cut(s) 878
BmiI GGNNCC 1 cut(s) 757
BmrFI CCNGG 1 cut(s) 320
BmsI GCATC 1 cut(s) 536
BpmI CTGGAG 1 cut(s) 341
Bpu10I CCTNAGC 2 cut(s) 558, 885
BsaJI CCNNGG 2 cut(s) 66, 189
BsaWI WCCGGW 1 cut(s) 483
Bsc4I CCNNNNNNNGG 1 cut(s) 749
Bse118I RCCGGY 1 cut(s) 483
Bse1I ACTGG 1 cut(s) 817
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 2 cut(s) 66, 189
BseGI GGATG 1 cut(s) 733
BseLI CCNNNNNNNGG 1 cut(s) 749
BseMII CTCAG 6 cut(s) 36, 87, 549, 672, 899, 927
BseNI ACTGG 1 cut(s) 817
BseRI GAGGAG 3 cut(s) 377, 751, 765
BseXI GCAGC 2 cut(s) 238, 943
Bsh1236I CGCG 4 cut(s) 82, 109, 310, 830
BshTI ACCGGT 1 cut(s) 483
BsiSI CCGG 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 749
BsmAI GTCTC 2 cut(s) 41, 796
Bsp143I GATC 3 cut(s) 425, 469, 508
BspACI CCGC 4 cut(s) 24, 74, 77, 310
BspCNI CTCAG 6 cut(s) 37, 88, 550, 673, 898, 926
BspFNI CGCG 4 cut(s) 82, 109, 310, 830
BspLI GGNNCC 1 cut(s) 757
BspPI GGATC 1 cut(s) 503
BspQI GCTCTTC 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 483
BsrI ACTGG 1 cut(s) 817
BssAI RCCGGY 1 cut(s) 483
BssECI CCNNGG 2 cut(s) 66, 189
BssMI GATC 3 cut(s) 425, 469, 508
BssSI CACGAG 2 cut(s) 419, 864
BssT1I CCWWGG 2 cut(s) 66, 189
Bst2BI CACGAG 2 cut(s) 419, 864
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 690
Bst6I CTCTTC 2 cut(s) 156, 531
BstC8I GCNNGC 1 cut(s) 129
BstENI CCTNNNNNAGG 1 cut(s) 747
BstF5I GGATG 1 cut(s) 733
BstFNI CGCG 4 cut(s) 82, 109, 310, 830
BstHHI GCGC 2 cut(s) 82, 109
BstKTI GATC 3 cut(s) 428, 472, 511
BstMAI GTCTC 2 cut(s) 41, 796
BstMBI GATC 3 cut(s) 425, 469, 508
BstMWI GCNNNNNNNGC 4 cut(s) 71, 155, 226, 890
BstNI CCWGG 1 cut(s) 320
BstNSI RCATGY 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 318
BstUI CGCG 4 cut(s) 82, 109, 310, 830
BstV1I GCAGC 2 cut(s) 238, 943
BstX2I RGATCY 2 cut(s) 469, 508
BstYI RGATCY 2 cut(s) 469, 508
BtrI CACGTC 1 cut(s) 878
BtsCI GGATG 1 cut(s) 733
BtsIMutI CAGTG 2 cut(s) 695, 852
Cac8I GCNNGC 1 cut(s) 129
CfoI GCGC 2 cut(s) 82, 109
Cfr10I RCCGGY 1 cut(s) 483
CseI GACGC 1 cut(s) 120
CspAI ACCGGT 1 cut(s) 483
CviAII CATG 1 cut(s) 159
DpnI GATC 3 cut(s) 427, 471, 510
DpnII GATC 3 cut(s) 425, 469, 508
Eam1104I CTCTTC 2 cut(s) 156, 531
EarI CTCTTC 2 cut(s) 156, 531
Eco130I CCWWGG 2 cut(s) 66, 189
Eco32I GATATC 1 cut(s) 213
Eco57I CTGAAG 2 cut(s) 288, 765
EcoNI CCTNNNNNAGG 1 cut(s) 747
EcoRII CCWGG 1 cut(s) 318
EcoRV GATATC 1 cut(s) 213
EcoT14I CCWWGG 2 cut(s) 66, 189
ErhI CCWWGG 2 cut(s) 66, 189
FaeI CATG 1 cut(s) 162
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FatI CATG 1 cut(s) 158
FauNDI CATATG 1 cut(s) 456
FblI GTMKAC 1 cut(s) 874
Fnu4HI GCNGC 4 cut(s) 75, 78, 227, 932
FokI GGATG 1 cut(s) 740
Fsp4HI GCNGC 4 cut(s) 75, 78, 227, 932
FspBI CTAG 2 cut(s) 411, 438
GlaI GCGC 2 cut(s) 81, 108
GluI GCNGC 4 cut(s) 75, 78, 227, 932
GsuI CTGGAG 1 cut(s) 341
HapII CCGG 1 cut(s) 484
HgaI GACGC 1 cut(s) 120
HhaI GCGC 2 cut(s) 82, 109
Hin1II CATG 1 cut(s) 162
Hin6I GCGC 2 cut(s) 80, 107
HinP1I GCGC 2 cut(s) 80, 107
HincII GTYRAC 1 cut(s) 875
HindII GTYRAC 1 cut(s) 875
HinfI GANTC 5 cut(s) 185, 305, 407, 605, 839
HpaII CCGG 1 cut(s) 484
HphI GGTGA 2 cut(s) 827, 838
Hpy166II GTNNAC 1 cut(s) 875
Hpy188I TCNGA 2 cut(s) 682, 916
Hpy188III TCNNGA 1 cut(s) 866
Hpy8I GTNNAC 1 cut(s) 875
Hpy99I CGWCG 2 cut(s) 785, 879
HpyAV CCTTC 5 cut(s) 28, 540, 619, 687, 740
HpyCH4III ACNGT 1 cut(s) 690
HpyCH4IV ACGT 1 cut(s) 877
HpyCH4V TGCA 4 cut(s) 158, 220, 549, 931
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 155, 226, 890
HpySE526I ACGT 1 cut(s) 877
Hsp92II CATG 1 cut(s) 162
HspAI GCGC 2 cut(s) 80, 107
Kzo9I GATC 3 cut(s) 425, 469, 508
LguI GCTCTTC 1 cut(s) 156
LpnPI CCDG 9 cut(s) 24, 305, 332, 497, 756, 784, 798, 862, 872
Lsp1109I GCAGC 2 cut(s) 238, 943
LweI GCATC 1 cut(s) 536
MaeI CTAG 2 cut(s) 411, 438
MaeII ACGT 1 cut(s) 877
MaeIII GTNAC 3 cut(s) 297, 461, 734
MalI GATC 3 cut(s) 427, 471, 510
MboI GATC 3 cut(s) 425, 469, 508
MboII GAAGA 6 cut(s) 43, 143, 281, 518, 641, 931
MflI RGATCY 2 cut(s) 469, 508
MluCI AATT 3 cut(s) 17, 326, 698
MluI ACGCGT 1 cut(s) 828
MlyI GAGTC 1 cut(s) 401
MseI TTAA 5 cut(s) 20, 171, 287, 447, 480
MslI CAYNNNNRTG 1 cut(s) 459
MspI CCGG 1 cut(s) 484
MspR9I CCNGG 1 cut(s) 320
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 4 cut(s) 82, 109, 310, 830
MwoI GCNNNNNNNGC 4 cut(s) 71, 155, 226, 890
NdeI CATATG 1 cut(s) 456
NdeII GATC 3 cut(s) 425, 469, 508
NlaIII CATG 1 cut(s) 162
NlaIV GGNNCC 1 cut(s) 757
NmuCI GTSAC 1 cut(s) 461
NspI RCATGY 1 cut(s) 162
PciSI GCTCTTC 1 cut(s) 156
PcsI WCGNNNNNNNCGW 1 cut(s) 871
PfeI GAWTC 4 cut(s) 185, 305, 605, 839
PfoI TCCNGGA 1 cut(s) 318
PinAI ACCGGT 1 cut(s) 483
PkrI GCNGC 4 cut(s) 76, 79, 228, 933
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
PsiI TTATAA 1 cut(s) 495
Psp6I CCWGG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 757
PsuI RGATCY 2 cut(s) 469, 508
RseI CAYNNNNRTG 1 cut(s) 459
SalI GTCGAC 1 cut(s) 873
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 5 cut(s) 20, 171, 287, 447, 480
SatI GCNGC 4 cut(s) 75, 78, 227, 932
Sau3AI GATC 3 cut(s) 425, 469, 508
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 320
SfaNI GCATC 1 cut(s) 536
SmiMI CAYNNNNRTG 1 cut(s) 459
Sse9I AATT 3 cut(s) 17, 326, 698
SsiI CCGC 4 cut(s) 24, 74, 77, 310
SspMI CTAG 2 cut(s) 411, 438
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 2 cut(s) 66, 189
TaaI ACNGT 1 cut(s) 690
TaiI ACGT 1 cut(s) 880
TaqI TCGA 1 cut(s) 874
TasI AATT 3 cut(s) 17, 326, 698
TauI GCSGC 2 cut(s) 77, 80
TfiI GAWTC 4 cut(s) 185, 305, 605, 839
Tru1I TTAA 5 cut(s) 20, 171, 287, 447, 480
Tru9I TTAA 5 cut(s) 20, 171, 287, 447, 480
TscAI CASTG 2 cut(s) 695, 859
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 2 cut(s) 226, 931
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 2 cut(s) 393, 801
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 2 cut(s) 695, 859
XagI CCTNNNNNAGG 1 cut(s) 747
XapI RAATTY 1 cut(s) 698
XceI RCATGY 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 874
XspI CTAG 2 cut(s) 411, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.