Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002918

Physical Location & Seq

Genomic Coordinates Forward (+)

67212894 .. 67220406

Gene Structure 7513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0542500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAATCATAGTTCTAATACTTTAGTAATCTATAGTAATCTATTTCATATATTCCGTGCTCCAGATACTAAAACGAATATCCGACGAAGTAAAACCATCTCTATCAAGATGACAGATCTATTCTCTGTACTAGCCATAGGATCAATTATACCAAGTCACACACTCATATTCCGGAAATACAGAAAAAAAGTACTTCCGGATACTGTATTTGAAGCAGTTGTTCGAATTCCCTATGATCTGCAAGTGAAACAAGTTCTTGCTAATGGTAAAAAAGGCGCTTTGAATGTGGGGGCTGTTCTTATTTTACCCGAGGGGTTTGAACTAGCCCCGCCCGATCGTATTTCGCCCGAGATTAAAGAAAAGATAGGAAATCTGTCTTTTCAAAGTTACCGGCCTACTAAAAAAAATATTCTTGTGATAGGTCCTGTTCCTGGTCAGAAATATAGTGAAATCACCTTTCCTATTCTTTCCCCGGACCCCGCTACTAAGAAAGATGTTCACTTCTTAAAATATCCCATATACGTAGGTGGGAACAGAGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAACAATAATGTTTATAATGCTACAGCAGCAGGTATAGTAAGCAAAATCATACGAAAAGAAAAAGGGGGATACGAAATAACCATAGTGGAGGCATCGGGTGGGCGTCAAGTGGTTGATATTATCCCTCCAGGGCCGGAACTTCTTGTTTCTGAGGGCGAATCCATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGCGGATTTGGTCAGGGGGATGCAGAAGTAGTACTTCAAGATCCATTACGTGTCCAAGGCCTTTTGCTTTTCTTGGCATCTGTTATTTTTGCACAAATCTTTTTGGTTCTTAAAAAGAAACAGTTTGAGAAAGTTCAATTGTCCGAAATGAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

34.18

Weight (kDa)

9.64

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Apocytochr_F_N	PF16639	62 - 180	9.5e-54	Apocytochrome F, N-terminal
Apocytochr_F_C	PF01333	192 - 310	4.7e-50	Apocytochrome F, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19010 AT1G19010 AT1G74860
fragaria_vesca	FvH4_5g16190 FvH4_5g16190 FvH4_6g49700 FvH4_6g49700
malus_domestica	MD06G1183100.v1.1 MD09G1042200.v1.1 MD14G1189100.v1.1 MD17G1043600.v1.1
prunus_persica	Prupe.3G275400_v2.0.a1 Prupe.3G275500_v2.0.a1 Prupe.5G181500_v2.0.a1 Prupe.5G181800_v2.0.a1
pyrus_communis	pycom06g16210 pycom111g03310 pycom14g15680 pycom17g03890
rosa_chinensis	RchiOBHm_Chr2g0169731 RchiOBHm_Chr7g0179941
rosa_laevigata	RLG00000005308 RLG00000021897
rosa_multiflora	Rmu_ssc0000247.1_g000001 Rmu_ssc0000389.1_g000031
rosa_roxburghii	Rroxscaffold_2G00081840 Rroxscaffold_3G00273290
rosa_rugosa	Rorug02G0542500 Rorug06G0429300
rosa_samantha	Rh2BG627000 Rh2CG596500 Rh2DG637900 Rh7AG029800 Rh7BG029000 Rh7CG030600 Rh7DG030000
rosa_wichuraiana	Rw2G050970 Rw7G002380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	588
Acc36I	ACCTGC	1 cut(s)	593
AccIII	TCCGGA	2 cut(s)	171, 196
AciI	CCGC	3 cut(s)	329, 480, 777
AclWI	GGATC	2 cut(s)	148, 809
AcsI	RAATTY	2 cut(s)	225, 925
AcyI	GRCGYC	1 cut(s)	676
AfaI	GTAC	3 cut(s)	129, 192, 807
AfiI	CCNNNNNNNGG	2 cut(s)	431, 773
AflIII	ACRYGT	1 cut(s)	823
AgsI	TTSAA	6 cut(s)	212, 283, 320, 383, 812, 911
AjnI	CCWGG	2 cut(s)	430, 700
Alw21I	GWGCWC	1 cut(s)	61
AlwI	GGATC	2 cut(s)	148, 809
Ama87I	CYCGRG	2 cut(s)	308, 347
Aor13HI	TCCGGA	2 cut(s)	171, 196
AoxI	GGCC	3 cut(s)	392, 704, 832
ApeKI	GCWGC	1 cut(s)	599
ApoI	RAATTY	2 cut(s)	225, 925
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	3 cut(s)	422, 475, 704
AsuC2I	CCSGG	1 cut(s)	473
AsuHPI	GGTGA	1 cut(s)	445
AsuII	TTCGAA	1 cut(s)	223
AvaI	CYCGRG	2 cut(s)	308, 347
AvaII	GGWCC	2 cut(s)	422, 475
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	611
BccI	CCATC	2 cut(s)	104, 743
BciT130I	CCWGG	2 cut(s)	432, 702
BciVI	GTATCC	2 cut(s)	193, 635
BclI	TGATCA	1 cut(s)	745
BcnI	CCSGG	1 cut(s)	473
BfaI	CTAG	3 cut(s)	131, 323, 931
BfmI	CTRYAG	2 cut(s)	31, 594
BfoI	RGCGCY	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	593
BfuI	GTATCC	2 cut(s)	193, 635
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	1 cut(s)	600
BlsI	GCNGC	1 cut(s)	601
BmcAI	AGTACT	2 cut(s)	192, 807
Bme1390I	CCNGG	3 cut(s)	432, 473, 702
Bme18I	GGWCC	2 cut(s)	422, 475
BmeT110I	CYCGRG	2 cut(s)	308, 347
BmgT120I	GGNCC	3 cut(s)	422, 475, 704
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	3 cut(s)	432, 473, 702
BmsI	GCATC	3 cut(s)	674, 784, 860
BpmI	CTGGAG	2 cut(s)	45, 684
Bpu14I	TTCGAA	1 cut(s)	223
BpuMI	CCSGG	1 cut(s)	473
BsaAI	YACGTR	2 cut(s)	523, 824
BsaHI	GRCGYC	1 cut(s)	676
BsaJI	CCNNGG	4 cut(s)	309, 471, 701, 829
BsaWI	WCCGGW	2 cut(s)	171, 196
BsaXI	ACNNNNNCTCC	2 cut(s)	556, 586
Bsc4I	CCNNNNNNNGG	2 cut(s)	431, 773
Bse118I	RCCGGY	1 cut(s)	390
BseAI	TCCGGA	2 cut(s)	171, 196
BseBI	CCWGG	2 cut(s)	432, 702
BseDI	CCNNGG	4 cut(s)	309, 471, 701, 829
BseGI	GGATG	1 cut(s)	799
BseLI	CCNNNNNNNGG	2 cut(s)	431, 773
BseMII	CTCAG	1 cut(s)	714
BseXI	GCAGC	1 cut(s)	611
Bsh1285I	CGRYCG	1 cut(s)	337
BshFI	GGCC	3 cut(s)	394, 706, 834
BsiEI	CGRYCG	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	61
BsiHKCI	CYCGRG	2 cut(s)	308, 347
BsiSI	CCGG	5 cut(s)	172, 197, 391, 473, 707
BslI	CCNNNNNNNGG	2 cut(s)	431, 773
BsnI	GGCC	3 cut(s)	394, 706, 834
BsoBI	CYCGRG	2 cut(s)	308, 347
Bsp119I	TTCGAA	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp13I	TCCGGA	2 cut(s)	171, 196
Bsp143I	GATC	6 cut(s)	115, 140, 235, 334, 745, 814
BspACI	CCGC	3 cut(s)	329, 480, 777
BspANI	GGCC	3 cut(s)	394, 706, 834
BspCNI	CTCAG	1 cut(s)	715
BspEI	TCCGGA	2 cut(s)	171, 196
BspLI	GGNNCC	1 cut(s)	477
BspMI	ACCTGC	1 cut(s)	593
BspPI	GGATC	2 cut(s)	148, 809
BspT104I	TTCGAA	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	390
BssAI	RCCGGY	1 cut(s)	390
BssECI	CCNNGG	4 cut(s)	309, 471, 701, 829
BssMI	GATC	6 cut(s)	115, 140, 235, 334, 745, 814
BssNI	GRCGYC	1 cut(s)	676
BssT1I	CCWWGG	1 cut(s)	829
Bst2UI	CCWGG	2 cut(s)	432, 702
Bst4CI	ACNGT	2 cut(s)	205, 897
BstACI	GRCGYC	1 cut(s)	676
BstBAI	YACGTR	2 cut(s)	523, 824
BstBI	TTCGAA	1 cut(s)	223
BstDEI	CTNAG	2 cut(s)	486, 723
BstF5I	GGATG	1 cut(s)	799
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	6 cut(s)	118, 143, 238, 337, 748, 817
BstMBI	GATC	6 cut(s)	115, 140, 235, 334, 745, 814
BstMCI	CGRYCG	1 cut(s)	337
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstNI	CCWGG	2 cut(s)	432, 702
BstSCI	CCNGG	3 cut(s)	430, 471, 700
BstSFI	CTRYAG	2 cut(s)	31, 594
BstSNI	TACGTA	1 cut(s)	523
BstV1I	GCAGC	1 cut(s)	611
BstX2I	RGATCY	2 cut(s)	115, 814
BstYI	RGATCY	2 cut(s)	115, 814
BsuI	GTATCC	2 cut(s)	193, 635
BsuRI	GGCC	3 cut(s)	394, 706, 834
BtsCI	GGATG	1 cut(s)	799
BveI	ACCTGC	1 cut(s)	593
CfoI	GCGC	1 cut(s)	278
Cfr10I	RCCGGY	1 cut(s)	390
Cfr13I	GGNCC	3 cut(s)	422, 475, 704
CseI	GACGC	1 cut(s)	665
Csp6I	GTAC	3 cut(s)	128, 191, 806
CviJI	RGCY	6 cut(s)	134, 293, 326, 394, 706, 834
CviKI_1	RGCY	6 cut(s)	134, 293, 326, 394, 706, 834
CviQI	GTAC	3 cut(s)	128, 191, 806
DdeI	CTNAG	2 cut(s)	486, 723
DpnI	GATC	6 cut(s)	117, 142, 237, 336, 747, 816
DpnII	GATC	6 cut(s)	115, 140, 235, 334, 745, 814
EciI	GGCGGA	1 cut(s)	792
Eco105I	TACGTA	1 cut(s)	523
Eco130I	CCWWGG	1 cut(s)	829
Eco147I	AGGCCT	1 cut(s)	834
Eco47I	GGWCC	2 cut(s)	422, 475
Eco88I	CYCGRG	2 cut(s)	308, 347
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRI	GAATTC	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	430, 700
EcoT14I	CCWWGG	1 cut(s)	829
ErhI	CCWWGG	1 cut(s)	829
FalI	AAGNNNNNCTT	2 cut(s)	792, 824
FauI	CCCGC	2 cut(s)	336, 487
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	1 cut(s)	600
FokI	GGATG	1 cut(s)	806
Fsp4HI	GCNGC	1 cut(s)	600
FspBI	CTAG	3 cut(s)	131, 323, 931
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	1 cut(s)	600
GsuI	CTGGAG	2 cut(s)	45, 684
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	3 cut(s)	394, 706, 834
HapII	CCGG	5 cut(s)	172, 197, 391, 473, 707
HgaI	GACGC	1 cut(s)	665
HhaI	GCGC	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	676
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HinfI	GANTC	2 cut(s)	4, 731
HpaII	CCGG	5 cut(s)	172, 197, 391, 473, 707
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	5 cut(s)	83, 438, 549, 724, 919
Hpy188III	TCNNGA	6 cut(s)	62, 106, 172, 197, 557, 812
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	2 cut(s)	87, 563
HpyAV	CCTTC	1 cut(s)	534
HpyCH4III	ACNGT	2 cut(s)	205, 897
HpyCH4IV	ACGT	2 cut(s)	522, 823
HpyCH4V	TGCA	3 cut(s)	241, 797, 866
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
HpyF3I	CTNAG	2 cut(s)	486, 723
HpySE526I	ACGT	2 cut(s)	522, 823
Hsp92I	GRCGYC	1 cut(s)	676
HspAI	GCGC	1 cut(s)	276
Kpn2I	TCCGGA	2 cut(s)	171, 196
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	6 cut(s)	115, 140, 235, 334, 745, 814
LmnI	GCTCC	2 cut(s)	64, 564
Lsp1109I	GCAGC	1 cut(s)	611
LweI	GCATC	3 cut(s)	674, 784, 860
MaeI	CTAG	3 cut(s)	131, 323, 931
MaeII	ACGT	2 cut(s)	522, 823
MaeIII	GTNAC	3 cut(s)	155, 386, 572
MalI	GATC	6 cut(s)	117, 142, 237, 336, 747, 816
MboI	GATC	6 cut(s)	115, 140, 235, 334, 745, 814
MfeI	CAATTG	1 cut(s)	911
MflI	RGATCY	2 cut(s)	115, 814
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	4 cut(s)	144, 225, 911, 925
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	5 cut(s)	304, 530, 655, 708, 718
MroI	TCCGGA	2 cut(s)	171, 196
MseI	TTAA	4 cut(s)	354, 506, 755, 885
MspI	CCGG	5 cut(s)	172, 197, 391, 473, 707
MspR9I	CCNGG	3 cut(s)	432, 473, 702
MunI	CAATTG	1 cut(s)	911
MvaI	CCWGG	2 cut(s)	432, 702
MwoI	GCNNNNNNNGC	1 cut(s)	599
NciI	CCSGG	1 cut(s)	473
NdeII	GATC	6 cut(s)	115, 140, 235, 334, 745, 814
NlaIV	GGNNCC	1 cut(s)	477
NmuCI	GTSAC	1 cut(s)	155
NspV	TTCGAA	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	834
PfeI	GAWTC	2 cut(s)	4, 731
PkrI	GCNGC	1 cut(s)	601
Ple19I	CGATCG	1 cut(s)	337
Ppu21I	YACGTR	2 cut(s)	523, 824
PpuMI	RGGWCCY	1 cut(s)	422
PsiI	TTATAA	1 cut(s)	588
Psp5II	RGGWCCY	1 cut(s)	422
Psp6I	CCWGG	2 cut(s)	430, 700
PspGI	CCWGG	2 cut(s)	430, 700
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	3 cut(s)	422, 475, 704
PspPPI	RGGWCCY	1 cut(s)	422
PsuI	RGATCY	2 cut(s)	115, 814
PvuI	CGATCG	1 cut(s)	337
RsaI	GTAC	3 cut(s)	129, 192, 807
RsaNI	GTAC	3 cut(s)	128, 191, 806
SaqAI	TTAA	4 cut(s)	354, 506, 755, 885
SatI	GCNGC	1 cut(s)	600
Sau3AI	GATC	6 cut(s)	115, 140, 235, 334, 745, 814
Sau96I	GGNCC	3 cut(s)	422, 475, 704
ScaI	AGTACT	2 cut(s)	192, 807
ScrFI	CCNGG	3 cut(s)	432, 473, 702
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	6 cut(s)	424, 458, 525, 529, 607, 826
SfaNI	GCATC	3 cut(s)	674, 784, 860
SfcI	CTRYAG	2 cut(s)	31, 594
SfuI	TTCGAA	1 cut(s)	223
SinI	GGWCC	2 cut(s)	422, 475
SnaBI	TACGTA	1 cut(s)	523
Sse9I	AATT	4 cut(s)	144, 225, 911, 925
SseBI	AGGCCT	1 cut(s)	834
SsiI	CCGC	3 cut(s)	329, 480, 777
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	3 cut(s)	131, 323, 931
StuI	AGGCCT	1 cut(s)	834
StyD4I	CCNGG	3 cut(s)	430, 471, 700
StyI	CCWWGG	1 cut(s)	829
TaaI	ACNGT	2 cut(s)	205, 897
TaiI	ACGT	2 cut(s)	525, 826
TaqI	TCGA	1 cut(s)	223
TasI	AATT	4 cut(s)	144, 225, 911, 925
TatI	WGTACW	3 cut(s)	127, 190, 805
TfiI	GAWTC	2 cut(s)	4, 731
Tru1I	TTAA	4 cut(s)	354, 506, 755, 885
Tru9I	TTAA	4 cut(s)	354, 506, 755, 885
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	599
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	17, 35
TspGWI	ACGGA	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	422, 475
XapI	RAATTY	2 cut(s)	225, 925
XspI	CTAG	3 cut(s)	131, 323, 931
ZrmI	AGTACT	2 cut(s)	192, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.