Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002918

Physical Location & Seq

Genomic Coordinates Forward (+)

66699284 .. 66702422

Gene Structure 3139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005308

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGACGAGGCTGAGAAACTGACGGCGTTGAAGAAGGCCTACGCGGATATAATACTTAATACGGCGAAGGAGGCGGCGGCGCGTGTAATGGTTTCGGAGAAGAGAGCTGTGAGGCTTCAAAGGGAGCTCCTTTACACTAAAGAAGAGGCGCTTCGGATGCTTCTCAGGCTTAAACACACTTATGATTCTAAGGTTGGTGAAGCAGAGATGAAGTTCTTGAGTCAACAGGGAAAGATTGATGAGCTTGAAGCACAGCTCCAGGAAGCCGAGGATATAGTGAGTGACCTTAGGGGAGAGTTGAGTGAAGTACAGGATCGACTGGAGAAGGCAAAAAAGAGACGAGCACTGGATAGGCAAAATTTAGAGGTTGATACTACTGCTCAAGAAAAGATGTCAAAGAATGGACAGTGTTTTCCGGGGATGATAACATCTCAACTTAATCCTCAGGCAGATGCGGTGGCAATTAATGGCAAAAAGTTCGATTGGAATGGGACATATGAGGGCAGCAGGTGTTACATTGAATCTGATTCTCTTAGGGATCATAACTATGTTCATAATCCTGATTTTGCCTCGATAGTAATGACAAGTAAAGAGCCTGAGTTATACAGAAATGGATGCACTCAGAGAATCCGTGCTTTTGAAAGATACATGTTTGATGAAAAGTTGTCTCTTTCTGGACTAGTTGATGACGAAAAGCATGCAACATTCATCGGAGGAAATGGTGAAGGCAAAGGGATGTCTGCAACACCTACACCAAAGTTTGACTATATGCATGAGGTAGAGAAGAACCTAGTAGAATTGAAAGTGAAGCATGCAGATGAGAGCCATAGAAGAGAAAAAGAACAGCTAGAAATAGAAGTACCTGCAATTTTGTCCTTCTGCAAAAAGAGAAGAAGAACAGCCAGAAATAGAAGTACATCTCCTTCACCCACATATCTTCCTCATCAGTTCACAGAAATGCGCCAAGTGTCTGGTTTATCCTGCTGCACTGCTTCTCCTATTTCGGTCAATGACAATGGTTTTACAGGTAATTCTGCCAAGAAATCTGAAGATAAAGTCACAGCATCTGTTTCGACCCCAAAGTCACCTTCAGATGCAATTGAAATGAGCTCACATTCAGCATTTGATATGGTTATTGATGGTGAAGTACAGTTGACTAGACCCTGGACTGCTGAGAAGGAGACCAACACTGATAAGTTGTTGACTGAAGAAACTGAATTGAGCAGACAAGAATGGTTATCTACAAAAAGTTTGGAGGTTCTGGCTTGCAATGCAGATTTTCAGAAAGATGAATCAGGTTTGGAAGCATCCCATTTAGATGACCTGGTCGCTAGTCCAACTGCAAGCAATAAACGACTAGCACTGGTTGCTCATCAGCTTCTCTCTCTCTCGCGGAGAAGAAGCAGGAGATGTGCAAACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

475

Amino Acids

53.48

Weight (kDa)

6.0

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19010 AT1G19010 AT1G74860
fragaria_vesca	FvH4_5g16190 FvH4_5g16190 FvH4_6g49700 FvH4_6g49700
malus_domestica	MD06G1183100.v1.1 MD09G1042200.v1.1 MD14G1189100.v1.1 MD17G1043600.v1.1
prunus_persica	Prupe.3G275400_v2.0.a1 Prupe.3G275500_v2.0.a1 Prupe.5G181500_v2.0.a1 Prupe.5G181800_v2.0.a1
pyrus_communis	pycom06g16210 pycom111g03310 pycom14g15680 pycom17g03890
rosa_chinensis	RchiOBHm_Chr2g0169731 RchiOBHm_Chr7g0179941
rosa_laevigata	RLG00000005308 RLG00000021897
rosa_multiflora	Rmu_ssc0000247.1_g000001 Rmu_ssc0000389.1_g000031
rosa_roxburghii	Rroxscaffold_2G00081840 Rroxscaffold_3G00273290
rosa_rugosa	Rorug02G0542500 Rorug06G0429300
rosa_samantha	Rh2BG627000 Rh2CG596500 Rh2DG637900 Rh7AG029800 Rh7BG029000 Rh7CG030600 Rh7DG030000
rosa_wichuraiana	Rw2G050970 Rw7G002380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	498
AasI	GACNNNNNNGTC	1 cut(s)	1081
Acc36I	ACCTGC	2 cut(s)	498, 871
AccII	CGCG	3 cut(s)	44, 82, 1393
AciI	CCGC	5 cut(s)	44, 74, 77, 455, 1393
AclWI	GGATC	2 cut(s)	321, 546
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	3 cut(s)	1068, 1074, 1227
AfaI	GTAC	4 cut(s)	309, 861, 916, 1149
AflIII	ACRYGT	1 cut(s)	648
AgsI	TTSAA	7 cut(s)	31, 119, 248, 521, 641, 802, 1103
AhlI	ACTAGT	1 cut(s)	679
AjnI	CCWGG	3 cut(s)	258, 1163, 1323
AjuI	GAANNNNNNNTTGG	2 cut(s)	1072, 1104
AluBI	AGCT	7 cut(s)	107, 127, 244, 256, 847, 1110, 1378
AluI	AGCT	7 cut(s)	107, 127, 244, 256, 847, 1110, 1378
Alw21I	GWGCWC	3 cut(s)	129, 346, 1112
Alw26I	GTCTC	3 cut(s)	331, 672, 1175
AlwI	GGATC	2 cut(s)	321, 546
AlwNI	CAGNNNCTG	1 cut(s)	1067
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	2 cut(s)	504, 984
ApoI	RAATTY	1 cut(s)	358
AseI	ATTAAT	1 cut(s)	465
AspLEI	GCGC	3 cut(s)	82, 151, 963
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	5 cut(s)	209, 734, 918, 1077, 1154
AxyI	CCTNAGG	2 cut(s)	287, 444
BanII	GRGCYC	2 cut(s)	129, 1112
BarI	GAAGNNNNNNTAC	4 cut(s)	23, 55, 907, 939
Bbv12I	GWGCWC	3 cut(s)	129, 346, 1112
BbvI	GCAGC	2 cut(s)	516, 971
BccI	CCATC	1 cut(s)	1133
BceAI	ACGGC	2 cut(s)	39, 78
BcgI	CGANNNNNNTGC	6 cut(s)	460, 494, 680, 714, 1053, 1087
BciT130I	CCWGG	3 cut(s)	260, 1165, 1325
BcnI	CCSGG	1 cut(s)	417
BcoDI	GTCTC	3 cut(s)	331, 672, 1175
BcuI	ACTAGT	1 cut(s)	679
BfaI	CTAG	6 cut(s)	680, 791, 848, 1158, 1332, 1358
BfoI	RGCGCY	1 cut(s)	152
BfuAI	ACCTGC	2 cut(s)	498, 871
BisI	GCNGC	4 cut(s)	75, 78, 505, 985
BlsI	GCNGC	4 cut(s)	76, 79, 506, 986
Bme1390I	CCNGG	4 cut(s)	260, 417, 1165, 1325
BmrFI	CCNGG	4 cut(s)	260, 417, 1165, 1325
BmsI	GCATC	6 cut(s)	147, 442, 605, 1073, 1084, 1316
BpmI	CTGGAG	2 cut(s)	242, 341
BpuEI	CTTGAG	2 cut(s)	238, 366
BpuMI	CCSGG	1 cut(s)	417
BsaI	GGTCTC	1 cut(s)	1175
BsaJI	CCNNGG	3 cut(s)	267, 416, 1163
BsaXI	ACNNNNNCTCC	2 cut(s)	979, 1009
Bse1I	ACTGG	3 cut(s)	324, 351, 1368
Bse21I	CCTNAGG	2 cut(s)	287, 444
Bse3DI	GCAATG	1 cut(s)	1276
BseBI	CCWGG	3 cut(s)	260, 1165, 1325
BseDI	CCNNGG	3 cut(s)	267, 416, 1163
BseGI	GGATG	5 cut(s)	162, 426, 620, 741, 1307
BseMI	GCAATG	1 cut(s)	1276
BseMII	CTCAG	5 cut(s)	178, 458, 588, 635, 1164
BseNI	ACTGG	3 cut(s)	324, 351, 1368
BseXI	GCAGC	2 cut(s)	516, 971
BsgI	GTGCAG	1 cut(s)	970
Bsh1236I	CGCG	3 cut(s)	44, 82, 1393
BshFI	GGCC	1 cut(s)	38
BsiHKAI	GWGCWC	3 cut(s)	129, 346, 1112
BsiSI	CCGG	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	505
BsmAI	GTCTC	3 cut(s)	331, 672, 1175
BsmBI	CGTCTC	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	505
BsnI	GGCC	1 cut(s)	38
Bso31I	GGTCTC	1 cut(s)	1175
Bsp1286I	GDGCHC	3 cut(s)	129, 346, 1112
Bsp143I	GATC	2 cut(s)	313, 538
BspACI	CCGC	5 cut(s)	44, 74, 77, 455, 1393
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	6 cut(s)	4, 177, 457, 589, 634, 1165
BspFNI	CGCG	3 cut(s)	44, 82, 1393
BspMI	ACCTGC	2 cut(s)	498, 871
BspPI	GGATC	2 cut(s)	321, 546
BspTNI	GGTCTC	1 cut(s)	1175
BsrDI	GCAATG	1 cut(s)	1276
BsrI	ACTGG	3 cut(s)	324, 351, 1368
BssECI	CCNNGG	3 cut(s)	267, 416, 1163
BssMI	GATC	2 cut(s)	313, 538
Bst2UI	CCWGG	3 cut(s)	260, 1165, 1325
Bst4CI	ACNGT	2 cut(s)	408, 1152
Bst6I	CTCTTC	3 cut(s)	95, 138, 826
BstAPI	GCANNNNNTGC	1 cut(s)	1367
BstC8I	GCNNGC	4 cut(s)	699, 813, 1267, 1345
BstDEI	CTNAG	9 cut(s)	12, 164, 189, 287, 444, 533, 597, 621, 1173
BstF5I	GGATG	5 cut(s)	162, 426, 620, 741, 1307
BstFNI	CGCG	3 cut(s)	44, 82, 1393
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	3 cut(s)	82, 151, 963
BstKTI	GATC	2 cut(s)	316, 541
BstMAI	GTCTC	3 cut(s)	331, 672, 1175
BstMBI	GATC	2 cut(s)	313, 538
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 157, 166, 1271, 1367
BstNI	CCWGG	3 cut(s)	260, 1165, 1325
BstNSI	RCATGY	3 cut(s)	652, 701, 815
BstSCI	CCNGG	4 cut(s)	258, 415, 1163, 1323
BstUI	CGCG	3 cut(s)	44, 82, 1393
BstV1I	GCAGC	2 cut(s)	516, 971
BstXI	CCANNNNNNTGG	1 cut(s)	971
Bsu36I	CCTNAGG	2 cut(s)	287, 444
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	5 cut(s)	162, 426, 620, 741, 1307
BtsI	GCAGTG	1 cut(s)	987
BtsIMutI	CAGTG	5 cut(s)	344, 413, 987, 1188, 1361
BveI	ACCTGC	2 cut(s)	498, 871
Cac8I	GCNNGC	4 cut(s)	699, 813, 1267, 1345
CaiI	CAGNNNCTG	1 cut(s)	1067
CfoI	GCGC	3 cut(s)	82, 151, 963
CsiI	ACCWGGT	1 cut(s)	1323
Csp6I	GTAC	4 cut(s)	308, 860, 915, 1148
CviAII	CATG	4 cut(s)	649, 698, 773, 812
CviQI	GTAC	4 cut(s)	308, 860, 915, 1148
DdeI	CTNAG	9 cut(s)	12, 164, 189, 287, 444, 533, 597, 621, 1173
DpnI	GATC	2 cut(s)	315, 540
DpnII	GATC	2 cut(s)	313, 538
DrdI	GACNNNNNNGTC	1 cut(s)	1081
DseDI	GACNNNNNNGTC	1 cut(s)	1081
Eam1104I	CTCTTC	3 cut(s)	95, 138, 826
EarI	CTCTTC	3 cut(s)	95, 138, 826
Ecl136II	GAGCTC	2 cut(s)	127, 1110
Eco147I	AGGCCT	1 cut(s)	38
Eco24I	GRGCYC	2 cut(s)	129, 1112
Eco31I	GGTCTC	1 cut(s)	1175
Eco53kI	GAGCTC	2 cut(s)	127, 1110
Eco57I	CTGAAG	3 cut(s)	1068, 1074, 1227
Eco81I	CCTNAGG	2 cut(s)	287, 444
EcoICRI	GAGCTC	2 cut(s)	127, 1110
EcoRII	CCWGG	3 cut(s)	258, 1163, 1323
EcoT22I	ATGCAT	1 cut(s)	774
EcoT38I	GRGCYC	2 cut(s)	129, 1112
Esp3I	CGTCTC	1 cut(s)	331
FaeI	CATG	4 cut(s)	652, 701, 776, 815
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	4 cut(s)	648, 697, 772, 811
FauNDI	CATATG	1 cut(s)	496
Fnu4HI	GCNGC	4 cut(s)	75, 78, 505, 985
FokI	GGATG	5 cut(s)	169, 433, 627, 748, 1294
FriOI	GRGCYC	2 cut(s)	129, 1112
Fsp4HI	GCNGC	4 cut(s)	75, 78, 505, 985
FspBI	CTAG	6 cut(s)	680, 791, 848, 1158, 1332, 1358
GlaI	GCGC	3 cut(s)	81, 150, 962
GluI	GCNGC	4 cut(s)	75, 78, 505, 985
GsuI	CTGGAG	2 cut(s)	242, 341
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	416
HhaI	GCGC	3 cut(s)	82, 151, 963
Hin1II	CATG	4 cut(s)	652, 701, 776, 815
Hin6I	GCGC	3 cut(s)	80, 149, 961
HinP1I	GCGC	3 cut(s)	80, 149, 961
HincII	GTYRAC	3 cut(s)	224, 1155, 1203
HindII	GTYRAC	3 cut(s)	224, 1155, 1203
HinfI	GANTC	6 cut(s)	185, 220, 521, 527, 627, 1292
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	5 cut(s)	209, 734, 918, 1077, 1154
Hpy166II	GTNNAC	4 cut(s)	224, 951, 1155, 1203
Hpy188I	TCNGA	8 cut(s)	97, 156, 526, 624, 713, 1048, 1093, 1284
Hpy188III	TCNNGA	4 cut(s)	217, 383, 560, 675
Hpy8I	GTNNAC	4 cut(s)	224, 951, 1155, 1203
HpyAV	CCTTC	8 cut(s)	28, 61, 319, 719, 886, 933, 1098, 1171
HpyCH4III	ACNGT	2 cut(s)	408, 1152
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 157, 166, 1271, 1367
HpyF3I	CTNAG	9 cut(s)	12, 164, 189, 287, 444, 533, 597, 621, 1173
Hsp92II	CATG	4 cut(s)	652, 701, 776, 815
HspAI	GCGC	3 cut(s)	80, 149, 961
Kzo9I	GATC	2 cut(s)	313, 538
LmnI	GCTCC	3 cut(s)	124, 132, 261
Lsp1109I	GCAGC	2 cut(s)	516, 971
LweI	GCATC	6 cut(s)	147, 442, 605, 1073, 1084, 1316
MabI	ACCWGGT	1 cut(s)	1323
MaeI	CTAG	6 cut(s)	680, 791, 848, 1158, 1332, 1358
MaeIII	GTNAC	4 cut(s)	281, 512, 1057, 1083
MalI	GATC	2 cut(s)	315, 540
MboI	GATC	2 cut(s)	313, 538
MfeI	CAATTG	1 cut(s)	1098
MhlI	GDGCHC	3 cut(s)	129, 346, 1112
MluCI	AATT	7 cut(s)	358, 462, 797, 867, 1030, 1098, 1217
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	1361
Mph1103I	ATGCAT	1 cut(s)	774
MseI	TTAA	4 cut(s)	57, 171, 438, 465
MslI	CAYNNNNRTG	5 cut(s)	180, 546, 816, 956, 1317
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	4 cut(s)	260, 417, 1165, 1325
MunI	CAATTG	1 cut(s)	1098
MvaI	CCWGG	3 cut(s)	260, 1165, 1325
MvnI	CGCG	3 cut(s)	44, 82, 1393
MwoI	GCNNNNNNNGC	5 cut(s)	71, 157, 166, 1271, 1367
NciI	CCSGG	1 cut(s)	417
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	2 cut(s)	313, 538
NlaIII	CATG	4 cut(s)	652, 701, 776, 815
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	3 cut(s)	281, 1057, 1083
NsiI	ATGCAT	1 cut(s)	774
NspI	RCATGY	3 cut(s)	652, 701, 815
PaeI	GCATGC	2 cut(s)	701, 815
PaqCI	CACCTGC	1 cut(s)	498
PceI	AGGCCT	1 cut(s)	38
PciI	ACATGT	1 cut(s)	648
PfeI	GAWTC	5 cut(s)	185, 521, 527, 627, 1292
PflFI	GACNNNGTC	1 cut(s)	1325
PfoI	TCCNGGA	1 cut(s)	258
PkrI	GCNGC	4 cut(s)	76, 79, 506, 986
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PscI	ACATGT	1 cut(s)	648
PshBI	ATTAAT	1 cut(s)	465
Psp124BI	GAGCTC	2 cut(s)	129, 1112
Psp6I	CCWGG	3 cut(s)	258, 1163, 1323
PspGI	CCWGG	3 cut(s)	258, 1163, 1323
PstNI	CAGNNNCTG	1 cut(s)	1067
PsyI	GACNNNGTC	1 cut(s)	1325
RsaI	GTAC	4 cut(s)	309, 861, 916, 1149
RsaNI	GTAC	4 cut(s)	308, 860, 915, 1148
RseI	CAYNNNNRTG	5 cut(s)	180, 546, 816, 956, 1317
SacI	GAGCTC	2 cut(s)	129, 1112
SaqAI	TTAA	4 cut(s)	57, 171, 438, 465
SatI	GCNGC	4 cut(s)	75, 78, 505, 985
Sau3AI	GATC	2 cut(s)	313, 538
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	4 cut(s)	260, 417, 1165, 1325
SduI	GDGCHC	3 cut(s)	129, 346, 1112
SexAI	ACCWGGT	1 cut(s)	1323
SfaNI	GCATC	6 cut(s)	147, 442, 605, 1073, 1084, 1316
SmiMI	CAYNNNNRTG	5 cut(s)	180, 546, 816, 956, 1317
SmlI	CTYRAG	2 cut(s)	217, 381
SmoI	CTYRAG	2 cut(s)	217, 381
SpeI	ACTAGT	1 cut(s)	679
SphI	GCATGC	2 cut(s)	701, 815
Sse9I	AATT	7 cut(s)	358, 462, 797, 867, 1030, 1098, 1217
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	5 cut(s)	44, 74, 77, 455, 1393
SspMI	CTAG	6 cut(s)	680, 791, 848, 1158, 1332, 1358
SstI	GAGCTC	2 cut(s)	129, 1112
StuI	AGGCCT	1 cut(s)	38
StyD4I	CCNGG	4 cut(s)	258, 415, 1163, 1323
TaaI	ACNGT	2 cut(s)	408, 1152
TaqI	TCGA	4 cut(s)	316, 480, 572, 1073
TaqII	GACCGA	1 cut(s)	994
TasI	AATT	7 cut(s)	358, 462, 797, 867, 1030, 1098, 1217
TatI	WGTACW	3 cut(s)	307, 914, 1147
TauI	GCSGC	2 cut(s)	77, 80
TfiI	GAWTC	5 cut(s)	185, 521, 527, 627, 1292
Tru1I	TTAA	4 cut(s)	57, 171, 438, 465
Tru9I	TTAA	4 cut(s)	57, 171, 438, 465
TscAI	CASTG	5 cut(s)	351, 413, 994, 1195, 1368
TseFI	GTSAC	3 cut(s)	281, 1057, 1083
TseI	GCWGC	2 cut(s)	504, 984
Tsp45I	GTSAC	3 cut(s)	281, 1057, 1083
TspDTI	ATGAA	5 cut(s)	224, 542, 672, 697, 1305
TspGWI	ACGGA	1 cut(s)	620
TspRI	CASTG	5 cut(s)	351, 413, 994, 1195, 1368
Tth111I	GACNNNGTC	1 cut(s)	1325
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	3 cut(s)	652, 701, 815
XspI	CTAG	6 cut(s)	680, 791, 848, 1158, 1332, 1358
Zsp2I	ATGCAT	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.