Rh7BG029000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
1979922 .. 1983508
3587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG029000.1

Sequence Viewer

Length: 1548 bp
ATGGACGAGGCCGAGAAACTGACGGCGTTGAAGAAGGCGTACGCGGATATAATACTTAATACGGCGAAGGAGGCGGCGGCGCGTGTAATTGTTTCGGAGAAGAGAGCTGTTCGGCTTCAAAGAGAGCTCCTTTACACTAAAGAAGAGGCGCTTCGGATGCTTCTAAGGCTTAAACACACTTATGATTCTAAGGTTGGTGAAGCAGAGATGAAGTCCTTGAGTCAACAGGGAAAGATTGATGAGCTTGAAGCACAGCTCCAGGAAGCCGAGGATATAGTGAGTGACCTTAGGGGAGAGTTGAGTGAAGTACAGGATCGACTGGAGAAGGCAAAAAAGAGACGAGCACTGGATAGGCAAAATTTAGAGGTTGATACTACTGCTCAAGAAAAGATGTCACAGAATGCTGCTCAAGAAAAGATGTCACAGAATGGACAGTGTTTTCCAGGGATGATAACATCTCAACTTAATCTTCAGGCAGATGTGGTGGCAATTAATGGCAAAAAGTTTGATTGTAATGGGACATATGAGGGCAGCAGGTGTTACATTGAATCTGATTCTCTTAGGGATCATAACTATGTTCATACTCCTGAATTTGCCTCGATAGTAATGACAAGTAAAGAGCCTGAGTTATACAGAAATGGATGCACTCAGAGAATCCGTGCTTTTGAAAGATACATGTTTGATGAAAAGTTGTCTCTTTCTGGACTAGTTGATGACGAAAAGCATGCAACATTCATCGGAGGAAATGGTGAAGGCAAAGGGATGTCTGTAACACCTACACCAAAGTTTGACTATATGCATGAGGCCGCGGTAGAGAAGAACCTAGTAGAATTGAAAGTGAAGCATGCAGATGAGAGCCATAGGAGAGAAAAAGAACAGCTAGAAATAGAAGTACCTGCAATTTTGTCCTTCTGCAAAAAGAGAAGAAGAACGGCCAGAAATAGAAGTACATCTCCTTCACCCACAGATCTTCCTCATCAGTTCACAGAAATGCGCCAAGTTTCTGGTTTATCCTGCTGCACTGCTTCTCCTACTTCGGTCAATGACAATGGTTTTACAGGTAATTCTGCCAAGAAATCTGAAGATAAAGTTGCAGCATCTGTTTCGAGCCCAAAGTCCCCTTCAGATGCAATTGAAATGAGCTCACATTCAGCATGTGATATGGTTATTGATAGTGAAGTACAGTTGACTAGACCCTGGACTGCTCAGAAGGAGACCAACACTGATAAGTTGTTAACTGAAGAAACTGAATTGACCAGACAAGAATGGTTATCTGCAAAAAGTTTGGAGGTTCTGGCTTGCAATGCAGATATTCAGAAAGATGAATCAGTTTTGGAAGCATCTCATTTAGATGACCTGGTCGCTAGTCAAACTGAAAGCAATAAGTTTCTCAGATATACATTCCACAGAAAGCGCAAAAGGGAGACTATGAGCATGCCTGAAACGAATTCCCAGAATGGCACTTTGGAGGGAAAGACAAGGGAGACAAAAATTGGTTCTCTGCAGCAACAGAAGTCGAGCTTGATGCCTGCATCGTCGGGATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

515

Amino Acids

57.85

Weight (kDa)

5.91

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 525
Acc36I ACCTGC 2 cut(s) 525, 904
AccII CGCG 3 cut(s) 44, 82, 809
AciI CCGC 5 cut(s) 44, 74, 77, 807, 809
AclWI GGATC 2 cut(s) 321, 573
AcoI YGGCCR 1 cut(s) 933
AcsI RAATTY 3 cut(s) 358, 590, 1447
AcuI CTGAAG 4 cut(s) 455, 1101, 1107, 1260
AfaI GTAC 5 cut(s) 41, 309, 894, 949, 1182
AflIII ACRYGT 1 cut(s) 675
AgsI TTSAA 7 cut(s) 31, 119, 248, 548, 668, 835, 1136
AhlI ACTAGT 1 cut(s) 706
AjnI CCWGG 4 cut(s) 258, 442, 1196, 1356
AjuI GAANNNNNNNTTGG 4 cut(s) 1105, 1137, 1448, 1480
AluBI AGCT 7 cut(s) 107, 127, 244, 256, 880, 1143, 1521
AluI AGCT 7 cut(s) 107, 127, 244, 256, 880, 1143, 1521
Alw21I GWGCWC 3 cut(s) 129, 346, 1145
Alw26I GTCTC 5 cut(s) 331, 699, 1208, 1418, 1478
AlwI GGATC 2 cut(s) 321, 573
AlwNI CAGNNNCTG 1 cut(s) 1100
AoxI GGCC 3 cut(s) 9, 804, 933
ApeKI GCWGC 5 cut(s) 404, 531, 1017, 1094, 1504
ApoI RAATTY 3 cut(s) 358, 590, 1447
AseI ATTAAT 1 cut(s) 492
AspLEI GCGC 4 cut(s) 82, 151, 996, 1416
AsuHPI GGTGA 3 cut(s) 209, 761, 951
AxyI CCTNAGG 1 cut(s) 287
BanII GRGCYC 3 cut(s) 129, 1112, 1145
BarI GAAGNNNNNNTAC 4 cut(s) 23, 55, 940, 972
Bbv12I GWGCWC 3 cut(s) 129, 346, 1145
BbvI GCAGC 5 cut(s) 391, 543, 1004, 1106, 1516
BceAI ACGGC 3 cut(s) 39, 78, 948
BcgI CGANNNNNNTGC 6 cut(s) 707, 741, 1086, 1120, 1507, 1541
BciT130I CCWGG 4 cut(s) 260, 444, 1198, 1358
BcoDI GTCTC 5 cut(s) 331, 699, 1208, 1418, 1478
BcuI ACTAGT 1 cut(s) 706
BfaI CTAG 5 cut(s) 707, 824, 881, 1191, 1365
BfmI CTRYAG 1 cut(s) 1502
BfoI RGCGCY 1 cut(s) 152
BfuAI ACCTGC 2 cut(s) 525, 904
BglII AGATCT 1 cut(s) 967
BisI GCNGC 8 cut(s) 75, 78, 405, 532, 807, 1018, 1095, 1505
BlsI GCNGC 8 cut(s) 76, 79, 406, 533, 808, 1019, 1096, 1506
Bme1390I CCNGG 4 cut(s) 260, 444, 1198, 1358
BmrFI CCNGG 4 cut(s) 260, 444, 1198, 1358
BmsI GCATC 7 cut(s) 147, 632, 1106, 1117, 1349, 1515, 1541
BpmI CTGGAG 2 cut(s) 242, 341
BpuEI CTTGAG 3 cut(s) 238, 366, 393
BsaI GGTCTC 1 cut(s) 1208
BsaJI CCNNGG 4 cut(s) 267, 443, 807, 1196
BsaXI ACNNNNNCTCC 2 cut(s) 1012, 1042
Bse1I ACTGG 2 cut(s) 324, 351
Bse21I CCTNAGG 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 1309
BseBI CCWGG 4 cut(s) 260, 444, 1198, 1358
BseDI CCNNGG 4 cut(s) 267, 443, 807, 1196
BseGI GGATG 4 cut(s) 162, 453, 647, 768
BseMI GCAATG 1 cut(s) 1309
BseMII CTCAG 4 cut(s) 615, 662, 1220, 1405
BseNI ACTGG 2 cut(s) 324, 351
BseXI GCAGC 5 cut(s) 391, 543, 1004, 1106, 1516
BsgI GTGCAG 1 cut(s) 1003
Bsh1236I CGCG 3 cut(s) 44, 82, 809
BshFI GGCC 3 cut(s) 11, 806, 935
BsiHKAI GWGCWC 3 cut(s) 129, 346, 1145
BsiWI CGTACG 1 cut(s) 39
BslFI GGGAC 2 cut(s) 532, 1102
BsmAI GTCTC 5 cut(s) 331, 699, 1208, 1418, 1478
BsmBI CGTCTC 1 cut(s) 331
BsmFI GGGAC 2 cut(s) 532, 1102
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 3 cut(s) 11, 806, 935
Bso31I GGTCTC 1 cut(s) 1208
Bsp1286I GDGCHC 4 cut(s) 129, 346, 1112, 1145
Bsp143I GATC 3 cut(s) 313, 565, 967
BspACI CCGC 5 cut(s) 44, 74, 77, 807, 809
BspANI GGCC 3 cut(s) 11, 806, 935
BspCNI CTCAG 4 cut(s) 616, 661, 1219, 1404
BspFNI CGCG 3 cut(s) 44, 82, 809
BspMAI CTGCAG 1 cut(s) 1506
BspMI ACCTGC 2 cut(s) 525, 904
BspPI GGATC 2 cut(s) 321, 573
BspTNI GGTCTC 1 cut(s) 1208
BsrDI GCAATG 1 cut(s) 1309
BsrI ACTGG 2 cut(s) 324, 351
BssECI CCNNGG 4 cut(s) 267, 443, 807, 1196
BssMI GATC 3 cut(s) 313, 565, 967
Bst2UI CCWGG 4 cut(s) 260, 444, 1198, 1358
Bst4CI ACNGT 2 cut(s) 435, 1185
Bst6I CTCTTC 2 cut(s) 95, 138
BstC8I GCNNGC 5 cut(s) 726, 846, 1300, 1436, 1530
BstDEI CTNAG 8 cut(s) 164, 189, 287, 560, 624, 648, 1206, 1391
BstDSI CCRYGG 1 cut(s) 807
BstF5I GGATG 4 cut(s) 162, 453, 647, 768
BstFNI CGCG 3 cut(s) 44, 82, 809
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 4 cut(s) 82, 151, 996, 1416
BstKTI GATC 3 cut(s) 316, 568, 970
BstMAI GTCTC 5 cut(s) 331, 699, 1208, 1418, 1478
BstMBI GATC 3 cut(s) 313, 565, 967
BstMWI GCNNNNNNNGC 4 cut(s) 71, 157, 166, 1304
BstNI CCWGG 4 cut(s) 260, 444, 1198, 1358
BstNSI RCATGY 5 cut(s) 679, 728, 848, 1158, 1438
BstSCI CCNGG 4 cut(s) 258, 442, 1196, 1356
BstSFI CTRYAG 1 cut(s) 1502
BstUI CGCG 3 cut(s) 44, 82, 809
BstV1I GCAGC 5 cut(s) 391, 543, 1004, 1106, 1516
BstX2I RGATCY 1 cut(s) 967
BstXI CCANNNNNNTGG 1 cut(s) 1004
BstYI RGATCY 1 cut(s) 967
Bsu36I CCTNAGG 1 cut(s) 287
BsuRI GGCC 3 cut(s) 11, 806, 935
BtgI CCRYGG 1 cut(s) 807
BtsCI GGATG 4 cut(s) 162, 453, 647, 768
BtsI GCAGTG 1 cut(s) 1020
BtsIMutI CAGTG 4 cut(s) 344, 440, 1020, 1221
BveI ACCTGC 2 cut(s) 525, 904
Cac8I GCNNGC 5 cut(s) 726, 846, 1300, 1436, 1530
CaiI CAGNNNCTG 1 cut(s) 1100
CfoI GCGC 4 cut(s) 82, 151, 996, 1416
Cfr42I CCGCGG 1 cut(s) 810
CsiI ACCWGGT 1 cut(s) 1356
Csp6I GTAC 5 cut(s) 40, 308, 893, 948, 1181
CviAII CATG 6 cut(s) 676, 725, 800, 845, 1155, 1435
CviQI GTAC 5 cut(s) 40, 308, 893, 948, 1181
DdeI CTNAG 8 cut(s) 164, 189, 287, 560, 624, 648, 1206, 1391
DpnI GATC 3 cut(s) 315, 567, 969
DpnII GATC 3 cut(s) 313, 565, 967
EaeI YGGCCR 1 cut(s) 933
Eam1104I CTCTTC 2 cut(s) 95, 138
EarI CTCTTC 2 cut(s) 95, 138
Ecl136II GAGCTC 2 cut(s) 127, 1143
Eco24I GRGCYC 3 cut(s) 129, 1112, 1145
Eco31I GGTCTC 1 cut(s) 1208
Eco53kI GAGCTC 2 cut(s) 127, 1143
Eco57I CTGAAG 4 cut(s) 455, 1101, 1107, 1260
Eco81I CCTNAGG 1 cut(s) 287
EcoICRI GAGCTC 2 cut(s) 127, 1143
EcoRI GAATTC 1 cut(s) 1447
EcoRII CCWGG 4 cut(s) 258, 442, 1196, 1356
EcoT22I ATGCAT 1 cut(s) 801
EcoT38I GRGCYC 3 cut(s) 129, 1112, 1145
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 6 cut(s) 679, 728, 803, 848, 1158, 1438
FalI AAGNNNNNCTT 4 cut(s) 135, 167, 1505, 1537
FaqI GGGAC 2 cut(s) 532, 1102
FatI CATG 6 cut(s) 675, 724, 799, 844, 1154, 1434
FauNDI CATATG 1 cut(s) 523
Fnu4HI GCNGC 8 cut(s) 75, 78, 405, 532, 807, 1018, 1095, 1505
FokI GGATG 4 cut(s) 169, 460, 654, 775
FriOI GRGCYC 3 cut(s) 129, 1112, 1145
Fsp4HI GCNGC 8 cut(s) 75, 78, 405, 532, 807, 1018, 1095, 1505
FspBI CTAG 5 cut(s) 707, 824, 881, 1191, 1365
GlaI GCGC 4 cut(s) 81, 150, 995, 1415
GluI GCNGC 8 cut(s) 75, 78, 405, 532, 807, 1018, 1095, 1505
GsuI CTGGAG 2 cut(s) 242, 341
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 3 cut(s) 11, 806, 935
HhaI GCGC 4 cut(s) 82, 151, 996, 1416
Hin1II CATG 6 cut(s) 679, 728, 803, 848, 1158, 1438
Hin6I GCGC 4 cut(s) 80, 149, 994, 1414
HinP1I GCGC 4 cut(s) 80, 149, 994, 1414
HincII GTYRAC 3 cut(s) 224, 1188, 1236
HindII GTYRAC 3 cut(s) 224, 1188, 1236
HinfI GANTC 6 cut(s) 185, 220, 548, 554, 654, 1325
HpaI GTTAAC 1 cut(s) 1236
HphI GGTGA 3 cut(s) 209, 761, 951
Hpy166II GTNNAC 4 cut(s) 224, 984, 1188, 1236
Hpy188III TCNNGA 5 cut(s) 383, 410, 587, 702, 1539
Hpy8I GTNNAC 4 cut(s) 224, 984, 1188, 1236
Hpy99I CGWCG 1 cut(s) 1540
HpyAV CCTTC 8 cut(s) 28, 61, 319, 746, 919, 966, 1131, 1204
HpyCH4III ACNGT 2 cut(s) 435, 1185
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 157, 166, 1304
HpyF3I CTNAG 8 cut(s) 164, 189, 287, 560, 624, 648, 1206, 1391
Hsp92II CATG 6 cut(s) 679, 728, 803, 848, 1158, 1438
HspAI GCGC 4 cut(s) 80, 149, 994, 1414
KspAI GTTAAC 1 cut(s) 1236
KspI CCGCGG 1 cut(s) 810
Kzo9I GATC 3 cut(s) 313, 565, 967
LmnI GCTCC 2 cut(s) 132, 261
Lsp1109I GCAGC 5 cut(s) 391, 543, 1004, 1106, 1516
LweI GCATC 7 cut(s) 147, 632, 1106, 1117, 1349, 1515, 1541
MabI ACCWGGT 1 cut(s) 1356
MaeI CTAG 5 cut(s) 707, 824, 881, 1191, 1365
MaeIII GTNAC 5 cut(s) 281, 393, 420, 539, 769
MalI GATC 3 cut(s) 315, 567, 969
MboI GATC 3 cut(s) 313, 565, 967
MfeI CAATTG 1 cut(s) 1131
MflI RGATCY 1 cut(s) 967
MhlI GDGCHC 4 cut(s) 129, 346, 1112, 1145
MlyI GAGTC 1 cut(s) 229
Mph1103I ATGCAT 1 cut(s) 801
MseI TTAA 5 cut(s) 57, 171, 465, 492, 1235
MslI CAYNNNNRTG 5 cut(s) 180, 573, 849, 989, 1350
MspA1I CMGCKG 1 cut(s) 809
MspR9I CCNGG 4 cut(s) 260, 444, 1198, 1358
MunI CAATTG 1 cut(s) 1131
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 4 cut(s) 260, 444, 1198, 1358
MvnI CGCG 3 cut(s) 44, 82, 809
MwoI GCNNNNNNNGC 4 cut(s) 71, 157, 166, 1304
NdeI CATATG 1 cut(s) 523
NdeII GATC 3 cut(s) 313, 565, 967
NlaIII CATG 6 cut(s) 679, 728, 803, 848, 1158, 1438
NmeAIII GCCGAG 2 cut(s) 37, 292
NmuCI GTSAC 3 cut(s) 281, 393, 420
NsiI ATGCAT 1 cut(s) 801
NspI RCATGY 5 cut(s) 679, 728, 848, 1158, 1438
PaeI GCATGC 3 cut(s) 728, 848, 1438
PaqCI CACCTGC 1 cut(s) 525
PciI ACATGT 1 cut(s) 675
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 5 cut(s) 185, 548, 554, 654, 1325
Pfl23II CGTACG 1 cut(s) 39
PflFI GACNNNGTC 1 cut(s) 1358
PfoI TCCNGGA 1 cut(s) 258
PkrI GCNGC 8 cut(s) 76, 79, 406, 533, 808, 1019, 1096, 1506
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PscI ACATGT 1 cut(s) 675
PshBI ATTAAT 1 cut(s) 492
Psp124BI GAGCTC 2 cut(s) 129, 1145
Psp6I CCWGG 4 cut(s) 258, 442, 1196, 1356
PspGI CCWGG 4 cut(s) 258, 442, 1196, 1356
PspLI CGTACG 1 cut(s) 39
PstI CTGCAG 1 cut(s) 1506
PstNI CAGNNNCTG 1 cut(s) 1100
PsuI RGATCY 1 cut(s) 967
PsyI GACNNNGTC 1 cut(s) 1358
RsaI GTAC 5 cut(s) 41, 309, 894, 949, 1182
RsaNI GTAC 5 cut(s) 40, 308, 893, 948, 1181
RseI CAYNNNNRTG 5 cut(s) 180, 573, 849, 989, 1350
SacI GAGCTC 2 cut(s) 129, 1145
SacII CCGCGG 1 cut(s) 810
SaqAI TTAA 5 cut(s) 57, 171, 465, 492, 1235
SatI GCNGC 8 cut(s) 75, 78, 405, 532, 807, 1018, 1095, 1505
Sau3AI GATC 3 cut(s) 313, 565, 967
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 4 cut(s) 260, 444, 1198, 1358
SduI GDGCHC 4 cut(s) 129, 346, 1112, 1145
SexAI ACCWGGT 1 cut(s) 1356
SfaNI GCATC 7 cut(s) 147, 632, 1106, 1117, 1349, 1515, 1541
SfcI CTRYAG 1 cut(s) 1502
Sfr303I CCGCGG 1 cut(s) 810
SgrBI CCGCGG 1 cut(s) 810
SmiMI CAYNNNNRTG 5 cut(s) 180, 573, 849, 989, 1350
SmlI CTYRAG 3 cut(s) 217, 381, 408
SmoI CTYRAG 3 cut(s) 217, 381, 408
SpeI ACTAGT 1 cut(s) 706
SphI GCATGC 3 cut(s) 728, 848, 1438
SsiI CCGC 5 cut(s) 44, 74, 77, 807, 809
SspMI CTAG 5 cut(s) 707, 824, 881, 1191, 1365
SstI GAGCTC 2 cut(s) 129, 1145
StyD4I CCNGG 4 cut(s) 258, 442, 1196, 1356
TaaI ACNGT 2 cut(s) 435, 1185
TaqI TCGA 4 cut(s) 316, 599, 1106, 1517
TaqII GACCGA 1 cut(s) 1027
TatI WGTACW 3 cut(s) 307, 947, 1180
TauI GCSGC 3 cut(s) 77, 80, 809
TfiI GAWTC 5 cut(s) 185, 548, 554, 654, 1325
Tru1I TTAA 5 cut(s) 57, 171, 465, 492, 1235
Tru9I TTAA 5 cut(s) 57, 171, 465, 492, 1235
TscAI CASTG 4 cut(s) 351, 440, 1027, 1228
TseFI GTSAC 3 cut(s) 281, 393, 420
TseI GCWGC 5 cut(s) 404, 531, 1017, 1094, 1504
Tsp45I GTSAC 3 cut(s) 281, 393, 420
TspDTI ATGAA 5 cut(s) 224, 569, 699, 724, 1338
TspGWI ACGGA 1 cut(s) 647
TspRI CASTG 4 cut(s) 351, 440, 1027, 1228
Tth111I GACNNNGTC 1 cut(s) 1358
VspI ATTAAT 1 cut(s) 492
XapI RAATTY 3 cut(s) 358, 590, 1447
XceI RCATGY 5 cut(s) 679, 728, 848, 1158, 1438
XspI CTAG 5 cut(s) 707, 824, 881, 1191, 1365
Zsp2I ATGCAT 1 cut(s) 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.