Rroxscaffold_3G00273290

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
65114432 .. 65117901
3470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00273290.1

Sequence Viewer

Length: 1512 bp
ATGGACGAGGCTGAGAAACTGACGGCGTTGAAGAAGGCCTATGCGGATATAATACTTAATACGGCGAAGGAGGCGGCGGCGCGTGTAATGGTTTCGGAGAAGAGAGCTGTTCGGCTTCAAAGAGAGCTCCTTTACACTAAAGAAGAGGCGCTTCGGATGCTTCTCAGGCTTAAACACAATTATGATTCTAAGGTTGGTGAAGCAGAGATGAAGTCCTTGAGTCAACAGGGAAAGATTGAAGAGCTTGAAGCACAGCTCCAGGAAGCCGAGGATATAGTGAGTGACCTTAGGGGAGAGTTGAGTGAAGTACAGGATCGACTGGAGAAGGCAAAAAAGAGACGAGCACTGGATAGGCAAAATTTAGAGGTTCATACTACTGCTCAAGAAAAGACGTCACAGAATGGACAGTGTTTTCCAGGGATGATAACAACTCAACTTAATCTTCAGGCAGATGTGGTGGCAATTAATGGCAAAAAGTTTGATTGGAATGGGACATATGAGGGCAGCAGGTGTTACATTGAATCTGATTCTCTTAGGGATCATAACTATGTTCATACTCCTGATTTTGCCTCGATAGTAATGACAAGTAAAGAGCCTGAGTTATACAGAAATGGATGCACTCAGAGAATCCGTGCTTTTGAAAGATACATGTTTGATGAAAAGTTGTCTCTTTCTGGACTAGTTGATGATGAAAAGCATGCAACATTCATAGGAGGAAATGGTGAAGGCAAAGGGATGTCTGTAACAACTACACCAAAGTTTGACTATATGCATGAGGTAGAGAAGAACCTAGTAGAATTGAAAGTGAAGCAGGCAGATGAGAGCCATAGGAGAGAAAAAGAACAGCTAGAAATAGAAGTACCTGCAATTTTGTCCTTCTGCAAAAAGAGAAGAAGAACGGCCAGAAATAGAAGTACATCTCCTTCACCCACAGATCTTCCTCATCAGTTCACGAAAATGCGCCAAGTTTCTGGTTTATCCTGCTGCACTGCTTCTCCTACTTCGGTCAATGACAATGGTTTTACAGGTAATTCTGCCAAGAAATCTGAAGATAAAGTCACAGCATCTGTTTCGAGCCTAAAGTCACCTTCAGATGCAATTGGAATGAGCTCACATTCAGCATTTGATATGGTTATTGATAGTGAAGTACAGTTGACTATACCCTGGACTGCTCAGCAGGAGGCCAACACTGATAAGTTGTTAACTGAAGAAACTGAATTGACCAGACAAGAATGGTTATCTGCAAAATGTTTGGAGGTTCTGGCTTGCAATGCAGATGTTCAGAAAGATGAATCAGTTTTGGAAGCATCTCATTTAGATGACCTGGTCGCTAGTCAAACTGAAAGCAATAAGTTTCTCAAATATACATTCCACAGAAAGCGCAAAAGGGAGACTATGAGCATACCTGAAACGGATTCCCAGAATGGCACTTTGGAGGGAAAGACAAGGGAGACAAAAATTAGTTCTCTGCAGCAACAGAAGTCGAGCTTGATGCCTGCATCGTCGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

503

Amino Acids

56.66

Weight (kDa)

6.0

Isoelectric Point (pI)

54.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 498
AatII GACGTC 1 cut(s) 395
Acc36I ACCTGC 2 cut(s) 498, 871
AccII CGCG 1 cut(s) 82
AciI CCGC 3 cut(s) 44, 74, 77
AclWI GGATC 2 cut(s) 321, 546
AcoI YGGCCR 1 cut(s) 900
AcsI RAATTY 1 cut(s) 358
AcuI CTGAAG 4 cut(s) 428, 1068, 1074, 1227
AcyI GRCGYC 1 cut(s) 392
AfaI GTAC 4 cut(s) 309, 861, 916, 1149
AflIII ACRYGT 1 cut(s) 648
AgsI TTSAA 7 cut(s) 31, 119, 239, 248, 521, 641, 802
AhlI ACTAGT 1 cut(s) 679
AjnI CCWGG 4 cut(s) 258, 415, 1163, 1323
AjuI GAANNNNNNNTTGG 2 cut(s) 1415, 1447
AluBI AGCT 7 cut(s) 107, 127, 244, 256, 847, 1110, 1488
AluI AGCT 7 cut(s) 107, 127, 244, 256, 847, 1110, 1488
Alw21I GWGCWC 3 cut(s) 129, 346, 1112
Alw26I GTCTC 4 cut(s) 331, 672, 1385, 1445
AlwI GGATC 2 cut(s) 321, 546
AlwNI CAGNNNCTG 1 cut(s) 1067
AoxI GGCC 3 cut(s) 36, 900, 1182
ApeKI GCWGC 3 cut(s) 504, 984, 1471
ApoI RAATTY 1 cut(s) 358
AseI ATTAAT 1 cut(s) 465
AspLEI GCGC 4 cut(s) 82, 151, 963, 1383
AsuHPI GGTGA 4 cut(s) 209, 734, 918, 1077
AxyI CCTNAGG 1 cut(s) 287
BanII GRGCYC 2 cut(s) 129, 1112
BarI GAAGNNNNNNTAC 2 cut(s) 907, 939
Bbv12I GWGCWC 3 cut(s) 129, 346, 1112
BbvI GCAGC 3 cut(s) 516, 971, 1483
BceAI ACGGC 3 cut(s) 39, 78, 915
BcgI CGANNNNNNTGC 4 cut(s) 1053, 1087, 1474, 1508
BciT130I CCWGG 4 cut(s) 260, 417, 1165, 1325
BcoDI GTCTC 4 cut(s) 331, 672, 1385, 1445
BcuI ACTAGT 1 cut(s) 679
BfaI CTAG 4 cut(s) 680, 791, 848, 1332
BfmI CTRYAG 1 cut(s) 1469
BfoI RGCGCY 1 cut(s) 152
BfuAI ACCTGC 2 cut(s) 498, 871
BglII AGATCT 1 cut(s) 934
BisI GCNGC 5 cut(s) 75, 78, 505, 985, 1472
BlpI GCTNAGC 1 cut(s) 1173
BlsI GCNGC 5 cut(s) 76, 79, 506, 986, 1473
Bme1390I CCNGG 4 cut(s) 260, 417, 1165, 1325
BmrFI CCNGG 4 cut(s) 260, 417, 1165, 1325
BmsI GCATC 7 cut(s) 147, 605, 1073, 1084, 1316, 1482, 1508
BpmI CTGGAG 2 cut(s) 242, 341
Bpu1102I GCTNAGC 1 cut(s) 1173
BpuEI CTTGAG 2 cut(s) 238, 366
BsaHI GRCGYC 1 cut(s) 392
BsaJI CCNNGG 3 cut(s) 267, 416, 1163
BsaXI ACNNNNNCTCC 2 cut(s) 979, 1009
Bse1I ACTGG 2 cut(s) 324, 351
Bse21I CCTNAGG 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 1276
BseBI CCWGG 4 cut(s) 260, 417, 1165, 1325
BseDI CCNNGG 3 cut(s) 267, 416, 1163
BseGI GGATG 4 cut(s) 162, 426, 620, 741
BseMI GCAATG 1 cut(s) 1276
BseMII CTCAG 4 cut(s) 178, 588, 635, 1187
BseNI ACTGG 2 cut(s) 324, 351
BseXI GCAGC 3 cut(s) 516, 971, 1483
BsgI GTGCAG 1 cut(s) 970
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 3 cut(s) 38, 902, 1184
BsiHKAI GWGCWC 3 cut(s) 129, 346, 1112
BslFI GGGAC 1 cut(s) 505
BsmAI GTCTC 4 cut(s) 331, 672, 1385, 1445
BsmBI CGTCTC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 505
BsnI GGCC 3 cut(s) 38, 902, 1184
Bsp1286I GDGCHC 3 cut(s) 129, 346, 1112
Bsp143I GATC 3 cut(s) 313, 538, 934
Bsp1720I GCTNAGC 1 cut(s) 1173
BspACI CCGC 3 cut(s) 44, 74, 77
BspANI GGCC 3 cut(s) 38, 902, 1184
BspCNI CTCAG 5 cut(s) 4, 177, 589, 634, 1186
BspFNI CGCG 1 cut(s) 82
BspMAI CTGCAG 1 cut(s) 1473
BspMI ACCTGC 2 cut(s) 498, 871
BspPI GGATC 2 cut(s) 321, 546
BspQI GCTCTTC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 1276
BsrI ACTGG 2 cut(s) 324, 351
BssECI CCNNGG 3 cut(s) 267, 416, 1163
BssMI GATC 3 cut(s) 313, 538, 934
BssNI GRCGYC 1 cut(s) 392
Bst2UI CCWGG 4 cut(s) 260, 417, 1165, 1325
Bst4CI ACNGT 2 cut(s) 408, 1152
Bst6I CTCTTC 3 cut(s) 95, 138, 234
BstACI GRCGYC 1 cut(s) 392
BstC8I GCNNGC 4 cut(s) 699, 813, 1267, 1497
BstDEI CTNAG 8 cut(s) 12, 164, 189, 287, 533, 597, 621, 1173
BstF5I GGATG 4 cut(s) 162, 426, 620, 741
BstFNI CGCG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 4 cut(s) 82, 151, 963, 1383
BstKTI GATC 3 cut(s) 316, 541, 937
BstMAI GTCTC 4 cut(s) 331, 672, 1385, 1445
BstMBI GATC 3 cut(s) 313, 538, 934
BstMWI GCNNNNNNNGC 4 cut(s) 71, 157, 166, 1271
BstNI CCWGG 4 cut(s) 260, 417, 1165, 1325
BstNSI RCATGY 2 cut(s) 652, 701
BstSCI CCNGG 4 cut(s) 258, 415, 1163, 1323
BstSFI CTRYAG 1 cut(s) 1469
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 3 cut(s) 516, 971, 1483
BstX2I RGATCY 1 cut(s) 934
BstXI CCANNNNNNTGG 1 cut(s) 971
BstYI RGATCY 1 cut(s) 934
Bsu36I CCTNAGG 1 cut(s) 287
BsuRI GGCC 3 cut(s) 38, 902, 1184
BtsCI GGATG 4 cut(s) 162, 426, 620, 741
BtsI GCAGTG 1 cut(s) 987
BtsIMutI CAGTG 4 cut(s) 344, 413, 987, 1188
BveI ACCTGC 2 cut(s) 498, 871
Cac8I GCNNGC 4 cut(s) 699, 813, 1267, 1497
CaiI CAGNNNCTG 1 cut(s) 1067
CfoI GCGC 4 cut(s) 82, 151, 963, 1383
CsiI ACCWGGT 1 cut(s) 1323
Csp6I GTAC 4 cut(s) 308, 860, 915, 1148
CviAII CATG 3 cut(s) 649, 698, 773
CviQI GTAC 4 cut(s) 308, 860, 915, 1148
DdeI CTNAG 8 cut(s) 12, 164, 189, 287, 533, 597, 621, 1173
DpnI GATC 3 cut(s) 315, 540, 936
DpnII GATC 3 cut(s) 313, 538, 934
EaeI YGGCCR 1 cut(s) 900
Eam1104I CTCTTC 3 cut(s) 95, 138, 234
EarI CTCTTC 3 cut(s) 95, 138, 234
Ecl136II GAGCTC 2 cut(s) 127, 1110
Eco147I AGGCCT 1 cut(s) 38
Eco24I GRGCYC 2 cut(s) 129, 1112
Eco53kI GAGCTC 2 cut(s) 127, 1110
Eco57I CTGAAG 4 cut(s) 428, 1068, 1074, 1227
Eco81I CCTNAGG 1 cut(s) 287
EcoICRI GAGCTC 2 cut(s) 127, 1110
EcoRII CCWGG 4 cut(s) 258, 415, 1163, 1323
EcoT22I ATGCAT 1 cut(s) 774
EcoT38I GRGCYC 2 cut(s) 129, 1112
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 3 cut(s) 652, 701, 776
FalI AAGNNNNNCTT 4 cut(s) 135, 167, 1472, 1504
FaqI GGGAC 1 cut(s) 505
FatI CATG 3 cut(s) 648, 697, 772
FauNDI CATATG 1 cut(s) 496
Fnu4HI GCNGC 5 cut(s) 75, 78, 505, 985, 1472
FokI GGATG 4 cut(s) 169, 433, 627, 748
FriOI GRGCYC 2 cut(s) 129, 1112
Fsp4HI GCNGC 5 cut(s) 75, 78, 505, 985, 1472
FspBI CTAG 4 cut(s) 680, 791, 848, 1332
GlaI GCGC 4 cut(s) 81, 150, 962, 1382
GluI GCNGC 5 cut(s) 75, 78, 505, 985, 1472
GsuI CTGGAG 2 cut(s) 242, 341
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 3 cut(s) 38, 902, 1184
HhaI GCGC 4 cut(s) 82, 151, 963, 1383
Hin1I GRCGYC 1 cut(s) 392
Hin1II CATG 3 cut(s) 652, 701, 776
Hin6I GCGC 4 cut(s) 80, 149, 961, 1381
HinP1I GCGC 4 cut(s) 80, 149, 961, 1381
HincII GTYRAC 3 cut(s) 224, 1155, 1203
HindII GTYRAC 3 cut(s) 224, 1155, 1203
HinfI GANTC 7 cut(s) 185, 220, 521, 527, 627, 1292, 1415
HpaI GTTAAC 1 cut(s) 1203
HphI GGTGA 4 cut(s) 209, 734, 918, 1077
Hpy166II GTNNAC 4 cut(s) 224, 951, 1155, 1203
Hpy188I TCNGA 7 cut(s) 97, 156, 526, 624, 1048, 1093, 1284
Hpy188III TCNNGA 5 cut(s) 383, 560, 675, 952, 1506
Hpy8I GTNNAC 4 cut(s) 224, 951, 1155, 1203
Hpy99I CGWCG 1 cut(s) 1507
HpyAV CCTTC 7 cut(s) 28, 61, 319, 719, 886, 933, 1098
HpyCH4III ACNGT 2 cut(s) 408, 1152
HpyCH4IV ACGT 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 157, 166, 1271
HpyF3I CTNAG 8 cut(s) 12, 164, 189, 287, 533, 597, 621, 1173
HpySE526I ACGT 1 cut(s) 392
Hsp92I GRCGYC 1 cut(s) 392
Hsp92II CATG 3 cut(s) 652, 701, 776
HspAI GCGC 4 cut(s) 80, 149, 961, 1381
KspAI GTTAAC 1 cut(s) 1203
Kzo9I GATC 3 cut(s) 313, 538, 934
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 2 cut(s) 132, 261
Lsp1109I GCAGC 3 cut(s) 516, 971, 1483
LweI GCATC 7 cut(s) 147, 605, 1073, 1084, 1316, 1482, 1508
MabI ACCWGGT 1 cut(s) 1323
MaeI CTAG 4 cut(s) 680, 791, 848, 1332
MaeII ACGT 1 cut(s) 392
MaeIII GTNAC 6 cut(s) 281, 393, 512, 742, 1057, 1083
MalI GATC 3 cut(s) 315, 540, 936
MboI GATC 3 cut(s) 313, 538, 934
MfeI CAATTG 1 cut(s) 1098
MflI RGATCY 1 cut(s) 934
MhlI GDGCHC 3 cut(s) 129, 346, 1112
MluCI AATT 9 cut(s) 178, 358, 462, 797, 867, 1030, 1098, 1217, 1458
MlyI GAGTC 1 cut(s) 229
Mph1103I ATGCAT 1 cut(s) 774
MseI TTAA 5 cut(s) 57, 171, 438, 465, 1202
MslI CAYNNNNRTG 4 cut(s) 180, 546, 956, 1317
MspR9I CCNGG 4 cut(s) 260, 417, 1165, 1325
MunI CAATTG 1 cut(s) 1098
MvaI CCWGG 4 cut(s) 260, 417, 1165, 1325
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 4 cut(s) 71, 157, 166, 1271
NdeI CATATG 1 cut(s) 496
NdeII GATC 3 cut(s) 313, 538, 934
NlaIII CATG 3 cut(s) 652, 701, 776
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 4 cut(s) 281, 393, 1057, 1083
NsiI ATGCAT 1 cut(s) 774
NspI RCATGY 2 cut(s) 652, 701
PaeI GCATGC 1 cut(s) 701
PaqCI CACCTGC 1 cut(s) 498
PceI AGGCCT 1 cut(s) 38
PciI ACATGT 1 cut(s) 648
PciSI GCTCTTC 1 cut(s) 234
PfeI GAWTC 6 cut(s) 185, 521, 527, 627, 1292, 1415
PflFI GACNNNGTC 1 cut(s) 1325
PfoI TCCNGGA 1 cut(s) 258
PkrI GCNGC 5 cut(s) 76, 79, 506, 986, 1473
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PscI ACATGT 1 cut(s) 648
PshBI ATTAAT 1 cut(s) 465
Psp124BI GAGCTC 2 cut(s) 129, 1112
Psp6I CCWGG 4 cut(s) 258, 415, 1163, 1323
PspGI CCWGG 4 cut(s) 258, 415, 1163, 1323
PstI CTGCAG 1 cut(s) 1473
PstNI CAGNNNCTG 1 cut(s) 1067
PsuI RGATCY 1 cut(s) 934
PsyI GACNNNGTC 1 cut(s) 1325
RsaI GTAC 4 cut(s) 309, 861, 916, 1149
RsaNI GTAC 4 cut(s) 308, 860, 915, 1148
RseI CAYNNNNRTG 4 cut(s) 180, 546, 956, 1317
SacI GAGCTC 2 cut(s) 129, 1112
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 5 cut(s) 57, 171, 438, 465, 1202
SatI GCNGC 5 cut(s) 75, 78, 505, 985, 1472
Sau3AI GATC 3 cut(s) 313, 538, 934
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 4 cut(s) 260, 417, 1165, 1325
SduI GDGCHC 3 cut(s) 129, 346, 1112
SexAI ACCWGGT 1 cut(s) 1323
SfaNI GCATC 7 cut(s) 147, 605, 1073, 1084, 1316, 1482, 1508
SfcI CTRYAG 1 cut(s) 1469
SmiMI CAYNNNNRTG 4 cut(s) 180, 546, 956, 1317
SmlI CTYRAG 2 cut(s) 217, 381
SmoI CTYRAG 2 cut(s) 217, 381
SpeI ACTAGT 1 cut(s) 679
SphI GCATGC 1 cut(s) 701
Sse9I AATT 9 cut(s) 178, 358, 462, 797, 867, 1030, 1098, 1217, 1458
SseBI AGGCCT 1 cut(s) 38
SsiI CCGC 3 cut(s) 44, 74, 77
SspMI CTAG 4 cut(s) 680, 791, 848, 1332
SstI GAGCTC 2 cut(s) 129, 1112
StuI AGGCCT 1 cut(s) 38
StyD4I CCNGG 4 cut(s) 258, 415, 1163, 1323
TaaI ACNGT 2 cut(s) 408, 1152
TaiI ACGT 1 cut(s) 395
TaqI TCGA 4 cut(s) 316, 572, 1073, 1484
TaqII GACCGA 1 cut(s) 994
TasI AATT 9 cut(s) 178, 358, 462, 797, 867, 1030, 1098, 1217, 1458
TatI WGTACW 3 cut(s) 307, 914, 1147
TauI GCSGC 2 cut(s) 77, 80
TfiI GAWTC 6 cut(s) 185, 521, 527, 627, 1292, 1415
Tru1I TTAA 5 cut(s) 57, 171, 438, 465, 1202
Tru9I TTAA 5 cut(s) 57, 171, 438, 465, 1202
TscAI CASTG 4 cut(s) 351, 413, 994, 1195
TseFI GTSAC 4 cut(s) 281, 393, 1057, 1083
TseI GCWGC 3 cut(s) 504, 984, 1471
Tsp45I GTSAC 4 cut(s) 281, 393, 1057, 1083
TspDTI ATGAA 7 cut(s) 224, 359, 542, 672, 697, 705, 1305
TspGWI ACGGA 2 cut(s) 620, 1427
TspRI CASTG 4 cut(s) 351, 413, 994, 1195
Tth111I GACNNNGTC 1 cut(s) 1325
VspI ATTAAT 1 cut(s) 465
XapI RAATTY 1 cut(s) 358
XceI RCATGY 2 cut(s) 652, 701
XspI CTAG 4 cut(s) 680, 791, 848, 1332
ZraI GACGTC 1 cut(s) 393
Zsp2I ATGCAT 1 cut(s) 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.