FvH4_5g16190

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
9233815 .. 9239934
6120 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16190.t2

Sequence Viewer

Length: 1533 bp
ATGGACCAGGCGGAGAAACTGACGGCGTTGAAGAAGGCATACGCCGATATAATCCTCAACACGGCGAAGGAGGCGGCGGCGCGTGTAATGGTGTCGGAGAAGAGAGCTGTTCGCCTTCAAAGGGAGATCCTTTACACTAAAGAAGAGGCGCTTCGGATGCTTCTCAGGCTTAAACACACCTATGATTCTAAGGTTGGTGAAGCAGAGATGAAGTCCATGAGTCAACAGGGAAAGATTGATGAGCTTGAAGCACAGCTCCAGGAAGCCGAGGATATAGTTAGTGACCTTAGGGGAGAGTTGAGTGTAGTACAGGATCGACTGGAGAAGGCAAAAAAGAGACGAGCACTGGAGAGGCAAAATTTAGAGGTTGATACTGCTGTTCAAGAAAATATGTCACAGGATGGACAGTGTTTTCCAGATATGATTACATCTCAACTTAATCCTCAGGCAGATGTGGTGGCAACTAATGGCAAGAAGTCCAACTGGAATAGGACATATGAGGGCAGCAAGTGTTACGTTGAATCTGATTCTCTCAAGAATCATAATTGTGTTCATGATCCTGATTTTGCCGCTATAGTAATGAGAAGTAAAGAGCCTGATTCATACAGAAATGGGTGCACTCAGAGAATCCGTGCTTTTGAAAGATACTTGTTTGATGAAAAGTTGTCTCTTTCTGGACTAGTTGATGATGCAAAGTATGCAACATTCATCAGCGGAAATGGTGAAGGCAAAGGGGTGTCTGTAACACCTACACCAAAGTTTGACGATTTGCATGAAGTAGAGAAAAACCTAGTAGAATTGGAACTGAGGCATGCGGATGCAAGCCATAGAAGAGAAAAGGAGCAGCCAGAAATAGAAGTACCTGCAATTTTGTCCTCCTGCAGGAAGAGAAAAAGAACTGCCAGAAATAGAAGTGCATCTCCTTTATCCACATATCTTGGCCATCTTCCTCATCAGTTCACGGAAATGCGCCAAGTTTCTGGTTTATCGTGCTGCACTACTTCTCCTAACTCAGCCAATAACAATGGTTTTACAGTTATTTCTGCCAAGAGATGTGATGATGAAGTAACAGCATCTGTTTCAAGCCCAAAGGCAACTTCAAATACAACGGAAATGAGCTCAGATTCAGCCATTGATATGGTTACTGATAGTGATGTACAATTGACTAGACCCTGGACTGTTCAGAAAGAGACCAATATTGATAAGTCGTTGACTGAAAAAACTGAATTGACCAGACAAGAATGGTCTTCTGCAGAAAGTTTGGAGGTTCTGGCTTGCAATACAGATCTTCAGAAAGTTGAATCAGTTTTGGAAGCATCTCATATAGATGACCTGGTGGCTAGTCAACCTGAAAGCAATAAGATTCTGAAATATACATTCCACAGAAAGTGTAAGAAGGATAGCTTGAGCATGCCTGAAAGCAACTCCCAGTATGGGACTTTGGAGGGAAATACAAGTGAGACAATAATTGGTCCTCTGCATCCAGAGCAGTCGACCTTGATGCTTGAATCGACTCGGGATAGTGACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

511

Amino Acids

57.22

Weight (kDa)

5.41

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 871
AccI GTMKAC 1 cut(s) 1493
AccII CGCG 1 cut(s) 82
AciI CCGC 6 cut(s) 11, 74, 77, 570, 714, 815
AclWI GGATC 3 cut(s) 121, 321, 551
AcoI YGGCCR 1 cut(s) 940
AcsI RAATTY 1 cut(s) 358
AcuI CTGAAG 1 cut(s) 1274
AfaI GTAC 3 cut(s) 309, 861, 1158
AfiI CCNNNNNNNGG 4 cut(s) 61, 121, 882, 1434
AhlI ACTAGT 1 cut(s) 679
AjnI CCWGG 4 cut(s) 6, 258, 1172, 1332
AjuI GAANNNNNNNTTGG 2 cut(s) 1081, 1113
AluBI AGCT 5 cut(s) 107, 244, 256, 1119, 1404
AluI AGCT 5 cut(s) 107, 244, 256, 1119, 1404
Alw21I GWGCWC 3 cut(s) 346, 620, 1121
Alw26I GTCTC 4 cut(s) 331, 672, 1184, 1454
Alw44I GTGCAC 1 cut(s) 616
AlwI GGATC 3 cut(s) 121, 321, 551
AlwNI CAGNNNCTG 1 cut(s) 1076
Ama87I CYCGRG 1 cut(s) 1515
AoxI GGCC 1 cut(s) 940
ApaLI GTGCAC 1 cut(s) 616
ApeKI GCWGC 3 cut(s) 504, 844, 993
ApoI RAATTY 1 cut(s) 358
AspLEI GCGC 3 cut(s) 82, 151, 972
AspS9I GGNCC 2 cut(s) 4, 1472
AsuHPI GGTGA 2 cut(s) 209, 734
AvaI CYCGRG 1 cut(s) 1515
AvaII GGWCC 2 cut(s) 4, 1472
AxyI CCTNAGG 2 cut(s) 287, 444
BaeGI GKGCMC 1 cut(s) 620
BaeI ACNNNNGTAYC 2 cut(s) 363, 396
BalI TGGCCA 1 cut(s) 942
BanII GRGCYC 1 cut(s) 1121
BarI GAAGNNNNNNTAC 2 cut(s) 23, 55
BbsI GAAGAC 1 cut(s) 1239
Bbv12I GWGCWC 3 cut(s) 346, 620, 1121
BbvI GCAGC 3 cut(s) 516, 856, 980
BccI CCATC 2 cut(s) 395, 951
BceAI ACGGC 2 cut(s) 39, 78
BcgI CGANNNNNNTGC 2 cut(s) 1483, 1517
BciT130I CCWGG 4 cut(s) 8, 260, 1174, 1334
BcoDI GTCTC 4 cut(s) 331, 672, 1184, 1454
BcuI ACTAGT 1 cut(s) 679
BfaI CTAG 5 cut(s) 680, 791, 1167, 1341, 1531
BfmI CTRYAG 3 cut(s) 573, 880, 1251
BfoI RGCGCY 1 cut(s) 152
BfuAI ACCTGC 1 cut(s) 871
BglII AGATCT 1 cut(s) 1285
BisI GCNGC 6 cut(s) 75, 78, 505, 570, 845, 994
BlsI GCNGC 6 cut(s) 76, 79, 506, 571, 846, 995
Bme1390I CCNGG 4 cut(s) 8, 260, 1174, 1334
Bme18I GGWCC 2 cut(s) 4, 1472
BmeT110I CYCGRG 1 cut(s) 1515
BmgT120I GGNCC 2 cut(s) 4, 1472
BmrFI CCNGG 4 cut(s) 8, 260, 1174, 1334
BmrI ACTGGG 1 cut(s) 1423
BmsI GCATC 8 cut(s) 147, 679, 808, 926, 1082, 1325, 1489, 1491
BmuI ACTGGG 1 cut(s) 1423
BpiI GAAGAC 1 cut(s) 1239
BpmI CTGGAG 3 cut(s) 242, 341, 368
BpuEI CTTGAG 2 cut(s) 518, 1426
BsaI GGTCTC 1 cut(s) 1184
BsaJI CCNNGG 2 cut(s) 267, 1172
BsaXI ACNNNNNCTCC 2 cut(s) 988, 1018
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 121, 882, 1434
Bse1I ACTGG 4 cut(s) 324, 351, 488, 1429
Bse21I CCTNAGG 2 cut(s) 287, 444
BseBI CCWGG 4 cut(s) 8, 260, 1174, 1334
BseDI CCNNGG 2 cut(s) 267, 1172
BseGI GGATG 4 cut(s) 162, 406, 823, 1480
BseLI CCNNNNNNNGG 4 cut(s) 61, 121, 882, 1434
BseMII CTCAG 6 cut(s) 178, 458, 635, 797, 1026, 1134
BseNI ACTGG 4 cut(s) 324, 351, 488, 1429
BseSI GKGCMC 1 cut(s) 620
BseXI GCAGC 3 cut(s) 516, 856, 980
BsgI GTGCAG 1 cut(s) 979
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 1 cut(s) 942
BsiHKAI GWGCWC 3 cut(s) 346, 620, 1121
BsiHKCI CYCGRG 1 cut(s) 1515
BslFI GGGAC 1 cut(s) 1450
BslI CCNNNNNNNGG 4 cut(s) 61, 121, 882, 1434
BsmAI GTCTC 4 cut(s) 331, 672, 1184, 1454
BsmBI CGTCTC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 1450
BsnI GGCC 1 cut(s) 942
Bso31I GGTCTC 1 cut(s) 1184
BsoBI CYCGRG 1 cut(s) 1515
Bsp1286I GDGCHC 3 cut(s) 346, 620, 1121
Bsp1407I TGTACA 1 cut(s) 1156
Bsp143I GATC 4 cut(s) 126, 313, 556, 1285
BspACI CCGC 6 cut(s) 11, 74, 77, 570, 714, 815
BspANI GGCC 1 cut(s) 942
BspCNI CTCAG 6 cut(s) 177, 457, 634, 798, 1025, 1133
BspFNI CGCG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 553
BspMAI CTGCAG 2 cut(s) 884, 1255
BspMI ACCTGC 1 cut(s) 871
BspPI GGATC 3 cut(s) 121, 321, 551
BspTNI GGTCTC 1 cut(s) 1184
BsrGI TGTACA 1 cut(s) 1156
BsrI ACTGG 4 cut(s) 324, 351, 488, 1429
BssECI CCNNGG 2 cut(s) 267, 1172
BssMI GATC 4 cut(s) 126, 313, 556, 1285
Bst2UI CCWGG 4 cut(s) 8, 260, 1174, 1334
Bst4CI ACNGT 3 cut(s) 408, 1036, 1180
Bst6I CTCTTC 4 cut(s) 95, 138, 826, 881
BstAPI GCANNNNNTGC 1 cut(s) 698
BstAUI TGTACA 1 cut(s) 1156
BstC8I GCNNGC 4 cut(s) 813, 823, 1276, 1412
BstDEI CTNAG 8 cut(s) 164, 189, 287, 444, 621, 806, 1012, 1120
BstENI CCTNNNNNAGG 1 cut(s) 880
BstF5I GGATG 4 cut(s) 162, 406, 823, 1480
BstFNI CGCG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 3 cut(s) 82, 151, 972
BstKTI GATC 4 cut(s) 129, 316, 559, 1288
BstMAI GTCTC 4 cut(s) 331, 672, 1184, 1454
BstMBI GATC 4 cut(s) 126, 313, 556, 1285
BstMWI GCNNNNNNNGC 5 cut(s) 71, 157, 166, 698, 1486
BstNI CCWGG 4 cut(s) 8, 260, 1174, 1334
BstNSI RCATGY 2 cut(s) 815, 1414
BstSCI CCNGG 4 cut(s) 6, 258, 1172, 1332
BstSFI CTRYAG 3 cut(s) 573, 880, 1251
BstSLI GKGCMC 1 cut(s) 620
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 3 cut(s) 516, 856, 980
BstV2I GAAGAC 1 cut(s) 1239
BstX2I RGATCY 2 cut(s) 126, 1285
BstXI CCANNNNNNTGG 2 cut(s) 980, 1138
BstYI RGATCY 2 cut(s) 126, 1285
Bsu36I CCTNAGG 2 cut(s) 287, 444
BsuRI GGCC 1 cut(s) 942
BtsCI GGATG 4 cut(s) 162, 406, 823, 1480
BtsIMutI CAGTG 2 cut(s) 344, 413
BveI ACCTGC 1 cut(s) 871
Cac8I GCNNGC 4 cut(s) 813, 823, 1276, 1412
CaiI CAGNNNCTG 1 cut(s) 1076
CciI TCATGA 1 cut(s) 553
CfoI GCGC 3 cut(s) 82, 151, 972
Cfr13I GGNCC 2 cut(s) 4, 1472
CsiI ACCWGGT 1 cut(s) 1332
Csp6I GTAC 3 cut(s) 308, 860, 1157
CspCI CAANNNNNGTGG 2 cut(s) 919, 954
CviAII CATG 5 cut(s) 217, 554, 773, 812, 1411
CviQI GTAC 3 cut(s) 308, 860, 1157
DdeI CTNAG 8 cut(s) 164, 189, 287, 444, 621, 806, 1012, 1120
DpnI GATC 4 cut(s) 128, 315, 558, 1287
DpnII GATC 4 cut(s) 126, 313, 556, 1285
EaeI YGGCCR 1 cut(s) 940
Eam1104I CTCTTC 4 cut(s) 95, 138, 826, 881
EarI CTCTTC 4 cut(s) 95, 138, 826, 881
EciI GGCGGA 1 cut(s) 26
Ecl136II GAGCTC 1 cut(s) 1119
Eco24I GRGCYC 1 cut(s) 1121
Eco31I GGTCTC 1 cut(s) 1184
Eco47I GGWCC 2 cut(s) 4, 1472
Eco53kI GAGCTC 1 cut(s) 1119
Eco57I CTGAAG 1 cut(s) 1274
Eco81I CCTNAGG 2 cut(s) 287, 444
Eco88I CYCGRG 1 cut(s) 1515
EcoICRI GAGCTC 1 cut(s) 1119
EcoNI CCTNNNNNAGG 1 cut(s) 880
EcoRII CCWGG 4 cut(s) 6, 258, 1172, 1332
EcoT38I GRGCYC 1 cut(s) 1121
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 5 cut(s) 220, 557, 776, 815, 1414
FalI AAGNNNNNCTT 4 cut(s) 135, 167, 1388, 1420
FaqI GGGAC 1 cut(s) 1450
FatI CATG 5 cut(s) 216, 553, 772, 811, 1410
FauNDI CATATG 1 cut(s) 496
FblI GTMKAC 1 cut(s) 1493
Fnu4HI GCNGC 6 cut(s) 75, 78, 505, 570, 845, 994
FokI GGATG 4 cut(s) 169, 413, 830, 1467
FriOI GRGCYC 1 cut(s) 1121
Fsp4HI GCNGC 6 cut(s) 75, 78, 505, 570, 845, 994
FspBI CTAG 5 cut(s) 680, 791, 1167, 1341, 1531
GlaI GCGC 3 cut(s) 81, 150, 971
GluI GCNGC 6 cut(s) 75, 78, 505, 570, 845, 994
GsuI CTGGAG 3 cut(s) 242, 341, 368
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 1 cut(s) 942
HhaI GCGC 3 cut(s) 82, 151, 972
Hin1II CATG 5 cut(s) 220, 557, 776, 815, 1414
Hin6I GCGC 3 cut(s) 80, 149, 970
HinP1I GCGC 3 cut(s) 80, 149, 970
HincII GTYRAC 4 cut(s) 224, 1212, 1346, 1494
HindII GTYRAC 4 cut(s) 224, 1212, 1346, 1494
HphI GGTGA 2 cut(s) 209, 734
Hpy166II GTNNAC 6 cut(s) 224, 618, 960, 1212, 1346, 1494
Hpy188I TCNGA 8 cut(s) 97, 156, 526, 624, 1123, 1185, 1293, 1368
Hpy188III TCNNGA 8 cut(s) 383, 416, 535, 554, 560, 675, 1484, 1517
Hpy8I GTNNAC 6 cut(s) 224, 618, 960, 1212, 1346, 1494
HpyAV CCTTC 6 cut(s) 28, 61, 125, 319, 719, 1390
HpyCH4III ACNGT 3 cut(s) 408, 1036, 1180
HpyCH4IV ACGT 1 cut(s) 516
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 157, 166, 698, 1486
HpyF3I CTNAG 8 cut(s) 164, 189, 287, 444, 621, 806, 1012, 1120
HpySE526I ACGT 1 cut(s) 516
Hsp92II CATG 5 cut(s) 220, 557, 776, 815, 1414
HspAI GCGC 3 cut(s) 80, 149, 970
Kzo9I GATC 4 cut(s) 126, 313, 556, 1285
LmnI GCTCC 2 cut(s) 261, 841
Lsp1109I GCAGC 3 cut(s) 516, 856, 980
LweI GCATC 8 cut(s) 147, 679, 808, 926, 1082, 1325, 1489, 1491
MabI ACCWGGT 1 cut(s) 1332
MaeI CTAG 5 cut(s) 680, 791, 1167, 1341, 1531
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 7 cut(s) 281, 393, 512, 742, 1066, 1141, 1523
MalI GATC 4 cut(s) 128, 315, 558, 1287
MboI GATC 4 cut(s) 126, 313, 556, 1285
MboII GAAGA 8 cut(s) 43, 112, 155, 843, 898, 938, 1239, 1280
MfeI CAATTG 1 cut(s) 1160
MflI RGATCY 2 cut(s) 126, 1285
MhlI GDGCHC 3 cut(s) 346, 620, 1121
MlsI TGGCCA 1 cut(s) 942
MluCI AATT 7 cut(s) 358, 544, 797, 867, 1160, 1226, 1467
MluNI TGGCCA 1 cut(s) 942
MlyI GAGTC 2 cut(s) 229, 1507
MmeI TCCRAC 2 cut(s) 75, 504
Mox20I TGGCCA 1 cut(s) 942
MscI TGGCCA 1 cut(s) 942
MseI TTAA 2 cut(s) 171, 438
MslI CAYNNNNRTG 6 cut(s) 180, 546, 816, 965, 1136, 1326
Msp20I TGGCCA 1 cut(s) 942
MspA1I CMGCKG 1 cut(s) 714
MspR9I CCNGG 4 cut(s) 8, 260, 1174, 1334
MunI CAATTG 1 cut(s) 1160
MvaI CCWGG 4 cut(s) 8, 260, 1174, 1334
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 5 cut(s) 71, 157, 166, 698, 1486
NdeI CATATG 1 cut(s) 496
NdeII GATC 4 cut(s) 126, 313, 556, 1285
NlaIII CATG 5 cut(s) 220, 557, 776, 815, 1414
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 3 cut(s) 281, 393, 1523
NspI RCATGY 2 cut(s) 815, 1414
PaeI GCATGC 2 cut(s) 815, 1414
PagI TCATGA 1 cut(s) 553
PfoI TCCNGGA 1 cut(s) 258
PkrI GCNGC 6 cut(s) 76, 79, 506, 571, 846, 995
PleI GAGTC 2 cut(s) 228, 1507
PpsI GAGTC 2 cut(s) 228, 1507
Psp124BI GAGCTC 1 cut(s) 1121
Psp6I CCWGG 4 cut(s) 6, 258, 1172, 1332
PspGI CCWGG 4 cut(s) 6, 258, 1172, 1332
PspPI GGNCC 2 cut(s) 4, 1472
PstI CTGCAG 2 cut(s) 884, 1255
PstNI CAGNNNCTG 1 cut(s) 1076
PsuI RGATCY 2 cut(s) 126, 1285
RsaI GTAC 3 cut(s) 309, 861, 1158
RsaNI GTAC 3 cut(s) 308, 860, 1157
RseI CAYNNNNRTG 6 cut(s) 180, 546, 816, 965, 1136, 1326
SacI GAGCTC 1 cut(s) 1121
SalI GTCGAC 1 cut(s) 1492
SaqAI TTAA 2 cut(s) 171, 438
SatI GCNGC 6 cut(s) 75, 78, 505, 570, 845, 994
Sau3AI GATC 4 cut(s) 126, 313, 556, 1285
Sau96I GGNCC 2 cut(s) 4, 1472
SbfI CCTGCAGG 1 cut(s) 884
SchI GAGTC 2 cut(s) 229, 1507
ScrFI CCNGG 4 cut(s) 8, 260, 1174, 1334
SdaI CCTGCAGG 1 cut(s) 884
SduI GDGCHC 3 cut(s) 346, 620, 1121
SexAI ACCWGGT 1 cut(s) 1332
SfaNI GCATC 8 cut(s) 147, 679, 808, 926, 1082, 1325, 1489, 1491
SfcI CTRYAG 3 cut(s) 573, 880, 1251
SinI GGWCC 2 cut(s) 4, 1472
SmiMI CAYNNNNRTG 6 cut(s) 180, 546, 816, 965, 1136, 1326
SmlI CTYRAG 2 cut(s) 533, 1405
SmoI CTYRAG 2 cut(s) 533, 1405
SpeI ACTAGT 1 cut(s) 679
SphI GCATGC 2 cut(s) 815, 1414
Sse8387I CCTGCAGG 1 cut(s) 884
Sse9I AATT 7 cut(s) 358, 544, 797, 867, 1160, 1226, 1467
SsiI CCGC 6 cut(s) 11, 74, 77, 570, 714, 815
SspI AATATT 1 cut(s) 1198
SspMI CTAG 5 cut(s) 680, 791, 1167, 1341, 1531
SstI GAGCTC 1 cut(s) 1121
StyD4I CCNGG 4 cut(s) 6, 258, 1172, 1332
TaaI ACNGT 3 cut(s) 408, 1036, 1180
TaiI ACGT 1 cut(s) 519
TaqI TCGA 3 cut(s) 316, 1493, 1511
TasI AATT 7 cut(s) 358, 544, 797, 867, 1160, 1226, 1467
TatI WGTACW 2 cut(s) 307, 1156
TauI GCSGC 3 cut(s) 77, 80, 572
Tru1I TTAA 2 cut(s) 171, 438
Tru9I TTAA 2 cut(s) 171, 438
TscAI CASTG 2 cut(s) 351, 413
TseFI GTSAC 3 cut(s) 281, 393, 1523
TseI GCWGC 3 cut(s) 504, 844, 993
Tsp45I GTSAC 3 cut(s) 281, 393, 1523
TspDTI ATGAA 7 cut(s) 224, 542, 591, 672, 697, 789, 1077
TspGWI ACGGA 3 cut(s) 620, 977, 1124
TspRI CASTG 2 cut(s) 351, 413
VneI GTGCAC 1 cut(s) 616
VpaK11BI GGWCC 2 cut(s) 4, 1472
XagI CCTNNNNNAGG 1 cut(s) 880
XapI RAATTY 1 cut(s) 358
XceI RCATGY 2 cut(s) 815, 1414
XmiI GTMKAC 1 cut(s) 1493
XspI CTAG 5 cut(s) 680, 791, 1167, 1341, 1531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.