MD06G1183100.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
32156700 .. 32159874
3175 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1183100.v1.1.491

Sequence Viewer

Length: 1458 bp
ATGGGCGAGTCCGAGGTTAAATTGACGGCGCTGAAGAAGGCGTACGCCGAGATAATCCTCGACACGGCGAAAGAGGCGGCGTCGCGAATTGTGGTGTCGGAGAGGAAAGCTCTGCGGTTTCAGAGGGAGCTCTTTTCGGCGAAAGACGAGGCCTTTCGGATGCTTCTCAGGCTCAAACAAATGTTGGATTCCAAGGATGACGAGGCAAAGACGATGTCTTTGAGTCAACAAGAAAAGATTGACGAGCTCGAAGCCCAGCTGCAGGAAGCTGAGGATATAGTGAAGGAGCTTAGGGAAGAGTTGAGTGAAGTGCAGGCTCAACTGGAGAAGGCGAGAAGCAATCCAAGACAGTCGGATGAGCAAAATTTACAGGGTAATACTGCTGCTCGAGGGTCAATAACATCGCAATTGAATTCAATTTCGAATGGGACGTATGATTCTCTTAAGGATAATTACTGTGTTTGTAATCCTGATTTCGCCTCGCTAGTAGTGAGAAGTAAAGAGCCTGAGTTATACAGAAATGGATGCACTCAGAGAATTCGTGCATTTGAAAGCAACCTGTTGGATGAAAAATTCTCTCTTTCCGGACTTGTTGATGATGGGAAGAATGTAACAATCATCAGAGGAGATGATGAACATCTGCGTAAAACCCCTAAACCGAATGGTGATAATACAAATGGGGTAGAGGAGAACCCAAAAGAACTTAAAGTGATGCAGGCAGATGGTAGCCATATTCAAGCACCTGCCTTTAGGTCCTTCCAGAAGAAGAGAAAGAGAGCAGCTAGATTTAGGAGAAGCAAAGCTCCCTCATGCAGGTATCTTGATCCTCATCAGTTGATGGAAATGCGCCAAGTATCTGATTTCTCGTGCTCTAGAACTTCTGCTTCGTCACTCAATAGCAGTGTTCTCACAGATAATGCTTCAAAGAAGTCTGAAGATGAAATTCATAAAGTCACATCATCCATTTCGATCCCAAAACTGCCCTCAGATACAACTGAAATGAGTACATGGTCCGAATGTGCTAATGTTACTGAAAATGATAGTGGTCAGAAGGCAACAACGTTTGTTGAAGAATCCAGATTGACCGGGCAGGAATGTGTCTCTGCCGAGAGTCTGGCGGTTCTGGCATGCAAAAGAGATGTTGAGAAAGATTATCCGTTACATAAGTCAAATACGAAAGTATCCAATTTAGATGATGGCACTACTAGTCAACCTGAAAACAATAAGTTTCTCAAATATACATTCTGCAGAAAGCGCAAGAAGGGCACGCTAAACAACCCTGAAAGCAAGTCCCTTCTTCACAATGACACTTTGGAAAGGAAGACAGTCGAGGAACAAAATGGTTCTCTAGAGCCACAGAAGTCAAGCTTGTTGCTCAAATCATCTCGGGACAGTCGACGACTAGCACAGGTTGCTCGTCAGCTTATATCTTTGTCGGAGAAGAAGTGGTGGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

486

Amino Acids

54.76

Weight (kDa)

8.22

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 751
Acc36I ACCTGC 2 cut(s) 751, 804
AccI GTMKAC 1 cut(s) 1396
AccII CGCG 1 cut(s) 85
AccIII TCCGGA 1 cut(s) 584
AciI CCGC 3 cut(s) 77, 115, 1118
AclI AACGTT 1 cut(s) 1061
AclWI GGATC 2 cut(s) 818, 964
AcsI RAATTY 5 cut(s) 364, 412, 537, 572, 942
AcuI CTGAAG 2 cut(s) 53, 954
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 2 cut(s) 44, 1006
AfiI CCNNNNNNNGG 3 cut(s) 64, 262, 813
AflII CTTAAG 1 cut(s) 443
AgsI TTSAA 6 cut(s) 412, 417, 551, 737, 924, 1070
AhlI ACTAGT 1 cut(s) 1205
Alw21I GWGCWC 3 cut(s) 132, 249, 872
Alw26I GTCTC 1 cut(s) 1105
AlwI GGATC 2 cut(s) 818, 964
Ama87I CYCGRG 2 cut(s) 387, 1386
Aor13HI TCCGGA 1 cut(s) 584
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 3 cut(s) 259, 383, 779
ApoI RAATTY 5 cut(s) 364, 412, 537, 572, 942
ArsI GACNNNNNNTTYG 4 cut(s) 200, 202, 232, 234
AspLEI GCGC 3 cut(s) 31, 849, 1257
AspS9I GGNCC 2 cut(s) 753, 1011
AsuC2I CCSGG 1 cut(s) 1087
AsuHPI GGTGA 1 cut(s) 677
AsuII TTCGAA 1 cut(s) 422
AvaI CYCGRG 2 cut(s) 387, 1386
AvaII GGWCC 2 cut(s) 753, 1011
BaeGI GKGCMC 1 cut(s) 1268
BaeI ACNNNNGTAYC 2 cut(s) 1164, 1197
BanII GRGCYC 2 cut(s) 132, 249
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BauI CACGAG 1 cut(s) 865
BbsI GAAGAC 1 cut(s) 1328
Bbv12I GWGCWC 3 cut(s) 132, 249, 872
BbvCI CCTCAGC 1 cut(s) 270
BbvI GCAGC 3 cut(s) 246, 370, 791
BccI CCATC 4 cut(s) 593, 716, 832, 1190
BceAI ACGGC 2 cut(s) 42, 81
BciVI GTATCC 1 cut(s) 1192
BcnI CCSGG 1 cut(s) 1087
BcoDI GTCTC 1 cut(s) 1105
BcuI ACTAGT 1 cut(s) 1205
BfaI CTAG 6 cut(s) 485, 783, 873, 1206, 1349, 1403
BfmI CTRYAG 2 cut(s) 260, 1246
BfoI RGCGCY 1 cut(s) 32
BfrI CTTAAG 1 cut(s) 443
BfuAI ACCTGC 2 cut(s) 751, 804
BfuI GTATCC 1 cut(s) 1192
BisI GCNGC 4 cut(s) 78, 260, 384, 780
BlsI GCNGC 4 cut(s) 79, 261, 385, 781
Bme1390I CCNGG 1 cut(s) 1087
Bme18I GGWCC 2 cut(s) 753, 1011
BmeT110I CYCGRG 2 cut(s) 387, 1386
BmgT120I GGNCC 2 cut(s) 753, 1011
BmrFI CCNGG 1 cut(s) 1087
BmsI GCATC 3 cut(s) 150, 515, 702
BpiI GAAGAC 1 cut(s) 1328
BplI GAGNNNNNCTC 2 cut(s) 94, 126
BpmI CTGGAG 1 cut(s) 344
Bpu10I CCTNAGC 2 cut(s) 270, 290
Bpu14I TTCGAA 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 1087
BsaBI GATNNNNATC 2 cut(s) 636, 828
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 12, 192
BsaWI WCCGGW 1 cut(s) 584
BsaXI ACNNNNNCTCC 1 cut(s) 1430
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 262, 813
Bse1I ACTGG 1 cut(s) 327
Bse8I GATNNNNATC 2 cut(s) 636, 828
BseAI TCCGGA 1 cut(s) 584
BseDI CCNNGG 2 cut(s) 12, 192
BseGI GGATG 6 cut(s) 165, 202, 361, 530, 571, 959
BseJI GATNNNNATC 2 cut(s) 636, 828
BseLI CCNNNNNNNGG 3 cut(s) 64, 262, 813
BseMII CTCAG 5 cut(s) 181, 261, 498, 545, 999
BseNI ACTGG 1 cut(s) 327
BseRI GAGGAG 2 cut(s) 639, 701
BseSI GKGCMC 1 cut(s) 1268
BseXI GCAGC 3 cut(s) 246, 370, 791
BseYI CCCAGC 1 cut(s) 255
BsgI GTGCAG 1 cut(s) 332
Bsh1236I CGCG 1 cut(s) 85
BshFI GGCC 1 cut(s) 152
BsiHKAI GWGCWC 3 cut(s) 132, 249, 872
BsiHKCI CYCGRG 2 cut(s) 387, 1386
BsiSI CCGG 2 cut(s) 585, 1086
BsiWI CGTACG 1 cut(s) 42
BslFI GGGAC 3 cut(s) 442, 1276, 1403
BslI CCNNNNNNNGG 3 cut(s) 64, 262, 813
BsmAI GTCTC 1 cut(s) 1105
BsmFI GGGAC 3 cut(s) 442, 1276, 1403
BsnI GGCC 1 cut(s) 152
BsoBI CYCGRG 2 cut(s) 387, 1386
Bsp119I TTCGAA 1 cut(s) 422
Bsp1286I GDGCHC 4 cut(s) 132, 249, 872, 1268
Bsp13I TCCGGA 1 cut(s) 584
Bsp143I GATC 2 cut(s) 823, 969
Bsp68I TCGCGA 1 cut(s) 85
BspACI CCGC 3 cut(s) 77, 115, 1118
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 5 cut(s) 180, 262, 499, 544, 998
BspEI TCCGGA 1 cut(s) 584
BspFNI CGCG 1 cut(s) 85
BspMAI CTGCAG 2 cut(s) 264, 1250
BspMI ACCTGC 2 cut(s) 751, 804
BspPI GGATC 2 cut(s) 818, 964
BspT104I TTCGAA 1 cut(s) 422
BspTI CTTAAG 1 cut(s) 443
BsrI ACTGG 1 cut(s) 327
BssECI CCNNGG 2 cut(s) 12, 192
BssMI GATC 2 cut(s) 823, 969
BssNI GRCGYC 1 cut(s) 80
BssSI CACGAG 1 cut(s) 865
BssT1I CCWWGG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 865
Bst4CI ACNGT 4 cut(s) 351, 458, 1327, 1394
Bst6I CTCTTC 2 cut(s) 291, 761
BstACI GRCGYC 1 cut(s) 80
BstAFI CTTAAG 1 cut(s) 443
BstAPI GCANNNNNTGC 1 cut(s) 1412
BstBI TTCGAA 1 cut(s) 422
BstC8I GCNNGC 4 cut(s) 315, 717, 1129, 1268
BstDEI CTNAG 6 cut(s) 167, 270, 290, 507, 531, 985
BstENI CCTNNNNNAGG 1 cut(s) 811
BstF5I GGATG 6 cut(s) 165, 202, 361, 530, 571, 959
BstFNI CGCG 1 cut(s) 85
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 3 cut(s) 31, 849, 1257
BstKTI GATC 2 cut(s) 826, 972
BstMAI GTCTC 1 cut(s) 1105
BstMBI GATC 2 cut(s) 823, 969
BstMWI GCNNNNNNNGC 6 cut(s) 74, 169, 1124, 1254, 1263, 1412
BstNSI RCATGY 1 cut(s) 1131
BstSCI CCNGG 1 cut(s) 1085
BstSFI CTRYAG 2 cut(s) 260, 1246
BstSLI GKGCMC 1 cut(s) 1268
BstUI CGCG 1 cut(s) 85
BstV1I GCAGC 3 cut(s) 246, 370, 791
BstV2I GAAGAC 1 cut(s) 1328
BsuI GTATCC 1 cut(s) 1192
BsuRI GGCC 1 cut(s) 152
BtgZI GCGATG 1 cut(s) 387
BtsCI GGATG 6 cut(s) 165, 202, 361, 530, 571, 959
BtsI GCAGTG 1 cut(s) 907
BtsIMutI CAGTG 1 cut(s) 907
BtuMI TCGCGA 1 cut(s) 85
BveI ACCTGC 2 cut(s) 751, 804
Cac8I GCNNGC 4 cut(s) 315, 717, 1129, 1268
CfoI GCGC 3 cut(s) 31, 849, 1257
Cfr13I GGNCC 2 cut(s) 753, 1011
CseI GACGC 1 cut(s) 69
Csp6I GTAC 2 cut(s) 43, 1005
CviAII CATG 3 cut(s) 810, 1008, 1128
CviQI GTAC 2 cut(s) 43, 1005
DdeI CTNAG 6 cut(s) 167, 270, 290, 507, 531, 985
DpnI GATC 2 cut(s) 825, 971
DpnII GATC 2 cut(s) 823, 969
Eam1104I CTCTTC 2 cut(s) 291, 761
EarI CTCTTC 2 cut(s) 291, 761
Ecl136II GAGCTC 2 cut(s) 130, 247
Eco130I CCWWGG 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 152
Eco24I GRGCYC 2 cut(s) 132, 249
Eco47I GGWCC 2 cut(s) 753, 1011
Eco53kI GAGCTC 2 cut(s) 130, 247
Eco57I CTGAAG 2 cut(s) 53, 954
Eco88I CYCGRG 2 cut(s) 387, 1386
EcoICRI GAGCTC 2 cut(s) 130, 247
EcoNI CCTNNNNNAGG 1 cut(s) 811
EcoO109I RGGNCCY 1 cut(s) 753
EcoRI GAATTC 2 cut(s) 412, 537
EcoT14I CCWWGG 1 cut(s) 192
EcoT38I GRGCYC 2 cut(s) 132, 249
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 3 cut(s) 813, 1011, 1131
FalI AAGNNNNNCTT 2 cut(s) 1352, 1384
FaqI GGGAC 3 cut(s) 442, 1276, 1403
FatI CATG 3 cut(s) 809, 1007, 1127
FblI GTMKAC 1 cut(s) 1396
Fnu4HI GCNGC 4 cut(s) 78, 260, 384, 780
FokI GGATG 6 cut(s) 172, 209, 368, 537, 578, 946
FriOI GRGCYC 2 cut(s) 132, 249
Fsp4HI GCNGC 4 cut(s) 78, 260, 384, 780
FspBI CTAG 6 cut(s) 485, 783, 873, 1206, 1349, 1403
GlaI GCGC 3 cut(s) 30, 848, 1256
GluI GCNGC 4 cut(s) 78, 260, 384, 780
GsaI CCCAGC 1 cut(s) 259
GsuI CTGGAG 1 cut(s) 344
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 1 cut(s) 152
HapII CCGG 2 cut(s) 585, 1086
HgaI GACGC 1 cut(s) 69
HhaI GCGC 3 cut(s) 31, 849, 1257
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 3 cut(s) 813, 1011, 1131
Hin6I GCGC 3 cut(s) 29, 847, 1255
HinP1I GCGC 3 cut(s) 29, 847, 1255
HincII GTYRAC 3 cut(s) 227, 1211, 1397
HindII GTYRAC 3 cut(s) 227, 1211, 1397
HindIII AAGCTT 1 cut(s) 1366
HinfI GANTC 6 cut(s) 8, 188, 223, 437, 1073, 1111
HpaII CCGG 2 cut(s) 585, 1086
HphI GGTGA 1 cut(s) 677
Hpy166II GTNNAC 3 cut(s) 227, 1211, 1397
Hpy188III TCNNGA 9 cut(s) 84, 470, 585, 760, 821, 873, 1077, 1349, 1388
Hpy8I GTNNAC 3 cut(s) 227, 1211, 1397
Hpy99I CGWCG 2 cut(s) 85, 1401
HpyAV CCTTC 7 cut(s) 31, 277, 322, 766, 1045, 1255, 1304
HpyCH4III ACNGT 4 cut(s) 351, 458, 1327, 1394
HpyCH4IV ACGT 2 cut(s) 431, 1061
HpyCH4V TGCA 8 cut(s) 262, 313, 528, 545, 715, 813, 1131, 1248
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 169, 1124, 1254, 1263, 1412
HpyF3I CTNAG 6 cut(s) 167, 270, 290, 507, 531, 985
HpySE526I ACGT 2 cut(s) 431, 1061
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 3 cut(s) 813, 1011, 1131
HspAI GCGC 3 cut(s) 29, 847, 1255
Kpn2I TCCGGA 1 cut(s) 584
Kzo9I GATC 2 cut(s) 823, 969
LmnI GCTCC 3 cut(s) 127, 286, 808
Lsp1109I GCAGC 3 cut(s) 246, 370, 791
LweI GCATC 3 cut(s) 150, 515, 702
MaeI CTAG 6 cut(s) 485, 783, 873, 1206, 1349, 1403
MaeII ACGT 2 cut(s) 431, 1061
MaeIII GTNAC 5 cut(s) 610, 888, 952, 1027, 1158
MalI GATC 2 cut(s) 825, 971
MboI GATC 2 cut(s) 823, 969
MfeI CAATTG 1 cut(s) 407
MhlI GDGCHC 4 cut(s) 132, 249, 872, 1268
MlyI GAGTC 3 cut(s) 17, 232, 1120
MmeI TCCRAC 5 cut(s) 78, 165, 333, 543, 1416
MroI TCCGGA 1 cut(s) 584
MseI TTAA 3 cut(s) 18, 444, 705
MspA1I CMGCKG 1 cut(s) 259
MspCI CTTAAG 1 cut(s) 443
MspI CCGG 2 cut(s) 585, 1086
MspR9I CCNGG 1 cut(s) 1087
MunI CAATTG 1 cut(s) 407
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 6 cut(s) 74, 169, 1124, 1254, 1263, 1412
NciI CCSGG 1 cut(s) 1087
NdeII GATC 2 cut(s) 823, 969
NlaIII CATG 3 cut(s) 813, 1011, 1131
NmeAIII GCCGAG 2 cut(s) 73, 1132
NmuCI GTSAC 2 cut(s) 888, 952
NruI TCGCGA 1 cut(s) 85
NspI RCATGY 1 cut(s) 1131
NspV TTCGAA 1 cut(s) 422
PaeI GCATGC 1 cut(s) 1131
PaeR7I CTCGAG 1 cut(s) 387
PaqCI CACCTGC 1 cut(s) 751
PceI AGGCCT 1 cut(s) 152
PcsI WCGNNNNNNNCGW 2 cut(s) 428, 1393
PfeI GAWTC 3 cut(s) 188, 437, 1073
Pfl23II CGTACG 1 cut(s) 42
PflFI GACNNNGTC 1 cut(s) 214
PkrI GCNGC 4 cut(s) 79, 261, 385, 781
PleI GAGTC 3 cut(s) 16, 231, 1119
PpsI GAGTC 3 cut(s) 16, 231, 1119
PpuMI RGGWCCY 1 cut(s) 753
Psp124BI GAGCTC 2 cut(s) 132, 249
Psp1406I AACGTT 1 cut(s) 1061
Psp5II RGGWCCY 1 cut(s) 753
PspFI CCCAGC 1 cut(s) 255
PspLI CGTACG 1 cut(s) 42
PspPI GGNCC 2 cut(s) 753, 1011
PspPPI RGGWCCY 1 cut(s) 753
PspXI VCTCGAGB 1 cut(s) 387
PstI CTGCAG 2 cut(s) 264, 1250
PsyI GACNNNGTC 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 259
RruI TCGCGA 1 cut(s) 85
RsaI GTAC 2 cut(s) 44, 1006
RsaNI GTAC 2 cut(s) 43, 1005
SacI GAGCTC 2 cut(s) 132, 249
SalI GTCGAC 1 cut(s) 1395
SaqAI TTAA 3 cut(s) 18, 444, 705
SatI GCNGC 4 cut(s) 78, 260, 384, 780
Sau3AI GATC 2 cut(s) 823, 969
Sau96I GGNCC 2 cut(s) 753, 1011
SchI GAGTC 3 cut(s) 17, 232, 1120
ScrFI CCNGG 1 cut(s) 1087
SduI GDGCHC 4 cut(s) 132, 249, 872, 1268
SfaNI GCATC 3 cut(s) 150, 515, 702
SfcI CTRYAG 2 cut(s) 260, 1246
Sfr274I CTCGAG 1 cut(s) 387
SfuI TTCGAA 1 cut(s) 422
SinI GGWCC 2 cut(s) 753, 1011
SlaI CTCGAG 1 cut(s) 387
SmlI CTYRAG 2 cut(s) 387, 443
SmoI CTYRAG 2 cut(s) 387, 443
SpeI ACTAGT 1 cut(s) 1205
SphI GCATGC 1 cut(s) 1131
SseBI AGGCCT 1 cut(s) 152
SsiI CCGC 3 cut(s) 77, 115, 1118
SspMI CTAG 6 cut(s) 485, 783, 873, 1206, 1349, 1403
SstI GAGCTC 2 cut(s) 132, 249
StuI AGGCCT 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 1085
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 4 cut(s) 351, 458, 1327, 1394
TaiI ACGT 2 cut(s) 434, 1064
TaqI TCGA 7 cut(s) 60, 249, 388, 422, 968, 1329, 1396
TatI WGTACW 1 cut(s) 1004
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 3 cut(s) 188, 437, 1073
Tru1I TTAA 3 cut(s) 18, 444, 705
Tru9I TTAA 3 cut(s) 18, 444, 705
TscAI CASTG 1 cut(s) 907
TseFI GTSAC 2 cut(s) 888, 952
TseI GCWGC 3 cut(s) 259, 383, 779
Tsp45I GTSAC 2 cut(s) 888, 952
TspDTI ATGAA 4 cut(s) 582, 648, 935, 954
TspGWI ACGGA 1 cut(s) 1146
TspRI CASTG 1 cut(s) 907
Tth111I GACNNNGTC 1 cut(s) 214
Vha464I CTTAAG 1 cut(s) 443
VpaK11BI GGWCC 2 cut(s) 753, 1011
XagI CCTNNNNNAGG 1 cut(s) 811
XapI RAATTY 5 cut(s) 364, 412, 537, 572, 942
XbaI TCTAGA 2 cut(s) 872, 1348
XceI RCATGY 1 cut(s) 1131
XhoI CTCGAG 1 cut(s) 387
XmiI GTMKAC 1 cut(s) 1396
XspI CTAG 6 cut(s) 485, 783, 873, 1206, 1349, 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.