Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002918

Physical Location & Seq

Genomic Coordinates Reverse (-)

2057120 .. 2060776

Gene Structure 3657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16042

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGACGAGGCTGAGAAACTGACGGCGTTGAAGAAGGCCTACGCGGATATAATACTGAATACGGCGAAGGAGGCGGCGGCGCGTGTAATGGTTTCGGAGAAGAGAGCTGTTTGGCTTCAAAGAGAGCTCCTTTACACTAAAGAAGAGGCGCTTCGGATGCTTCTAAGGCTTAAACACACTTATGATTCTAAGGTTGGTGAAGCAGAGATGAAGTCCTTGAGTCAACAGGGAAAGATTGATGAGCTTGAAGCACAGCTCCAGGAAGCCGAGGATATAGTGAGTGACCTTAGGGGAGAGTTGAGTGAAGTACAGGATCGACTGGAGAAGGCAAAAAAGAGACGAGCACTGGATAGGCAAAATTTAGAGGTTGATACTACTGCTCAAGAAAAGATGTCACCGAATGGACAGTGTTTTCCAGGGATGATAACATCTCAACTTAATCTTCAGGCAGATGTGGTGGCAATTAATGGCAAAAAGTTTGAGACATATGAGGGCAGCAGGTGTTACATTGAATCTGATTCTCTTAGGGATCATAACTATGTTCATACTCCTGAATTTGCCTCGATAGTAATGACAAGTAAAGAGCCTGAGTTATACAGAAATGGATGCACTCAGAGAATCCGTGCTTTTGAAAGATATATGTTTGATGAAAAGTTGTCTCTTTCTGGACTAGTTGATGATGAAAAGCATGCAACATTCATCAGAGGAAATGGTGAAGGCAAAGGGATGTCTGTAACACCTACACCAAAGTTTGACTATATGCATGAGGTAGAGAAGAACCTAGTAGAATTGAAAGTGAAGCATGCAGATGAGAGCCATAGGAGAGAAAAAGAACAGCTAGAAATAGAAGTACCTGCAATTTTGTCCTTCTGCAAAAAGAGAAGAAGAACGGCCAGAAATAGAAGTACATCTCCTTCACCCACAGATCTTCCTCATCTGTTCACGGAAATGCGTCAAGTTTCTGGTTTATCCTACTGCACTGCTTCTCCTACTTCGGTCAATGACAATGGTTTTACAGGTAATTCTGCCAAGAAATCTGAAGATAAAGTTGCAGCATCTGTTTCAAGCCCAAAGTCACCTTCAGATGCAATTGAAATGAGCTCACATTCAGCATTTGATATGGTTATTGATAGTGAAGTACAGTCGACTAGACCCTGGACTGCTCAGAAGGAGACCAACACTGATAAGTTGTTAACTGAAGAAACTGAATTGACCAGACAAGAATGGTTATCTGCAAAAAATTTGGAGGTTCTGGCTTGCAATGCAGATATTCAGAAAGATGAATCAGTTTTGGAAGCATCTCATTTAGATGACCTGGTCGCTAGTCAAACTGAAAGCAATAAGTTTCTCAGATATACATTCCACAGAAAGCGCAAAAGGGAGACTATGAGCATGCCTGAAACGAATTCCCAGAATGGCACTTTGGAGGGAAAGACAAGGGAGACAAAAATTGGTTCTCTACAGCAACAGAAGTCGAGCTTGATGCCTGCATCGTCGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

500

Amino Acids

56.55

Weight (kDa)

5.91

Isoelectric Point (pI)

55.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19010 AT1G19010 AT1G74860
fragaria_vesca	FvH4_5g16190 FvH4_5g16190 FvH4_6g49700 FvH4_6g49700
malus_domestica	MD06G1183100.v1.1 MD09G1042200.v1.1 MD14G1189100.v1.1 MD17G1043600.v1.1
prunus_persica	Prupe.3G275400_v2.0.a1 Prupe.3G275500_v2.0.a1 Prupe.5G181500_v2.0.a1 Prupe.5G181800_v2.0.a1
pyrus_communis	pycom06g16210 pycom111g03310 pycom14g15680 pycom17g03890
rosa_chinensis	RchiOBHm_Chr2g0169731 RchiOBHm_Chr7g0179941
rosa_laevigata	RLG00000005308 RLG00000021897
rosa_multiflora	Rmu_ssc0000247.1_g000001 Rmu_ssc0000389.1_g000031
rosa_roxburghii	Rroxscaffold_2G00081840 Rroxscaffold_3G00273290
rosa_rugosa	Rorug02G0542500 Rorug06G0429300
rosa_samantha	Rh2BG627000 Rh2CG596500 Rh2DG637900 Rh7AG029800 Rh7BG029000 Rh7CG030600 Rh7DG030000
rosa_wichuraiana	Rw2G050970 Rw7G002380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	489
Acc36I	ACCTGC	2 cut(s)	489, 862
AccI	GTMKAC	1 cut(s)	1145
AccII	CGCG	2 cut(s)	44, 82
AciI	CCGC	3 cut(s)	44, 74, 77
AclWI	GGATC	2 cut(s)	321, 537
AcoI	YGGCCR	1 cut(s)	891
AcsI	RAATTY	4 cut(s)	358, 554, 1240, 1405
AcuI	CTGAAG	4 cut(s)	428, 1059, 1065, 1218
AfaI	GTAC	4 cut(s)	309, 852, 907, 1140
AgsI	TTSAA	8 cut(s)	31, 119, 248, 512, 632, 793, 1065, 1094
AhlI	ACTAGT	1 cut(s)	670
AjnI	CCWGG	4 cut(s)	258, 415, 1154, 1314
AjuI	GAANNNNNNNTTGG	4 cut(s)	1063, 1095, 1406, 1438
AluBI	AGCT	7 cut(s)	107, 127, 244, 256, 838, 1101, 1479
AluI	AGCT	7 cut(s)	107, 127, 244, 256, 838, 1101, 1479
Alw21I	GWGCWC	3 cut(s)	129, 346, 1103
Alw26I	GTCTC	6 cut(s)	331, 476, 663, 1166, 1376, 1436
AlwI	GGATC	2 cut(s)	321, 537
AlwNI	CAGNNNCTG	1 cut(s)	1058
AoxI	GGCC	2 cut(s)	36, 891
ApeKI	GCWGC	2 cut(s)	495, 1052
ApoI	RAATTY	4 cut(s)	358, 554, 1240, 1405
AseI	ATTAAT	1 cut(s)	465
AspLEI	GCGC	3 cut(s)	82, 151, 1374
AsuHPI	GGTGA	5 cut(s)	209, 387, 725, 909, 1068
AxyI	CCTNAGG	1 cut(s)	287
BanII	GRGCYC	2 cut(s)	129, 1103
BarI	GAAGNNNNNNTAC	4 cut(s)	23, 55, 898, 930
Bbv12I	GWGCWC	3 cut(s)	129, 346, 1103
BbvI	GCAGC	2 cut(s)	507, 1064
BceAI	ACGGC	3 cut(s)	39, 78, 906
BcgI	CGANNNNNNTGC	2 cut(s)	1465, 1499
BciT130I	CCWGG	4 cut(s)	260, 417, 1156, 1316
BcoDI	GTCTC	6 cut(s)	331, 476, 663, 1166, 1376, 1436
BcuI	ACTAGT	1 cut(s)	670
BfaI	CTAG	5 cut(s)	671, 782, 839, 1149, 1323
BfmI	CTRYAG	1 cut(s)	1460
BfoI	RGCGCY	1 cut(s)	152
BfuAI	ACCTGC	2 cut(s)	489, 862
BglII	AGATCT	1 cut(s)	925
BisI	GCNGC	4 cut(s)	75, 78, 496, 1053
BlsI	GCNGC	4 cut(s)	76, 79, 497, 1054
Bme1390I	CCNGG	4 cut(s)	260, 417, 1156, 1316
BmrFI	CCNGG	4 cut(s)	260, 417, 1156, 1316
BmsI	GCATC	7 cut(s)	147, 596, 1064, 1075, 1307, 1473, 1499
BpmI	CTGGAG	2 cut(s)	242, 341
BpuEI	CTTGAG	2 cut(s)	238, 366
BsaI	GGTCTC	1 cut(s)	1166
BsaJI	CCNNGG	3 cut(s)	267, 416, 1154
BsaXI	ACNNNNNCTCC	2 cut(s)	970, 1000
Bse1I	ACTGG	2 cut(s)	324, 351
Bse21I	CCTNAGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	1267
BseBI	CCWGG	4 cut(s)	260, 417, 1156, 1316
BseDI	CCNNGG	3 cut(s)	267, 416, 1154
BseGI	GGATG	4 cut(s)	162, 426, 611, 732
BseMI	GCAATG	1 cut(s)	1267
BseMII	CTCAG	4 cut(s)	579, 626, 1178, 1363
BseNI	ACTGG	2 cut(s)	324, 351
BseXI	GCAGC	2 cut(s)	507, 1064
BsgI	GTGCAG	1 cut(s)	961
Bsh1236I	CGCG	2 cut(s)	44, 82
BshFI	GGCC	2 cut(s)	38, 893
BsiHKAI	GWGCWC	3 cut(s)	129, 346, 1103
BsmAI	GTCTC	6 cut(s)	331, 476, 663, 1166, 1376, 1436
BsmBI	CGTCTC	1 cut(s)	331
BsnI	GGCC	2 cut(s)	38, 893
Bso31I	GGTCTC	1 cut(s)	1166
Bsp1286I	GDGCHC	3 cut(s)	129, 346, 1103
Bsp143I	GATC	3 cut(s)	313, 529, 925
BspACI	CCGC	3 cut(s)	44, 74, 77
BspANI	GGCC	2 cut(s)	38, 893
BspCNI	CTCAG	5 cut(s)	4, 580, 625, 1177, 1362
BspFNI	CGCG	2 cut(s)	44, 82
BspMI	ACCTGC	2 cut(s)	489, 862
BspPI	GGATC	2 cut(s)	321, 537
BspTNI	GGTCTC	1 cut(s)	1166
BsrDI	GCAATG	1 cut(s)	1267
BsrI	ACTGG	2 cut(s)	324, 351
BssECI	CCNNGG	3 cut(s)	267, 416, 1154
BssMI	GATC	3 cut(s)	313, 529, 925
Bst2UI	CCWGG	4 cut(s)	260, 417, 1156, 1316
Bst4CI	ACNGT	2 cut(s)	408, 1143
Bst6I	CTCTTC	2 cut(s)	95, 138
BstC8I	GCNNGC	5 cut(s)	690, 804, 1258, 1394, 1488
BstDEI	CTNAG	9 cut(s)	12, 164, 189, 287, 524, 588, 612, 1164, 1349
BstF5I	GGATG	4 cut(s)	162, 426, 611, 732
BstFNI	CGCG	2 cut(s)	44, 82
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	3 cut(s)	82, 151, 1374
BstKTI	GATC	3 cut(s)	316, 532, 928
BstMAI	GTCTC	6 cut(s)	331, 476, 663, 1166, 1376, 1436
BstMBI	GATC	3 cut(s)	313, 529, 925
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 157, 166, 1262
BstNI	CCWGG	4 cut(s)	260, 417, 1156, 1316
BstNSI	RCATGY	3 cut(s)	692, 806, 1396
BstSCI	CCNGG	4 cut(s)	258, 415, 1154, 1314
BstSFI	CTRYAG	1 cut(s)	1460
BstUI	CGCG	2 cut(s)	44, 82
BstV1I	GCAGC	2 cut(s)	507, 1064
BstX2I	RGATCY	1 cut(s)	925
BstYI	RGATCY	1 cut(s)	925
Bsu36I	CCTNAGG	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	38, 893
BtsCI	GGATG	4 cut(s)	162, 426, 611, 732
BtsI	GCAGTG	1 cut(s)	978
BtsIMutI	CAGTG	4 cut(s)	344, 413, 978, 1179
BveI	ACCTGC	2 cut(s)	489, 862
Cac8I	GCNNGC	5 cut(s)	690, 804, 1258, 1394, 1488
CaiI	CAGNNNCTG	1 cut(s)	1058
CfoI	GCGC	3 cut(s)	82, 151, 1374
CseI	GACGC	1 cut(s)	941
CsiI	ACCWGGT	1 cut(s)	1314
Csp6I	GTAC	4 cut(s)	308, 851, 906, 1139
CviAII	CATG	4 cut(s)	689, 764, 803, 1393
CviQI	GTAC	4 cut(s)	308, 851, 906, 1139
DdeI	CTNAG	9 cut(s)	12, 164, 189, 287, 524, 588, 612, 1164, 1349
DpnI	GATC	3 cut(s)	315, 531, 927
DpnII	GATC	3 cut(s)	313, 529, 925
EaeI	YGGCCR	1 cut(s)	891
Eam1104I	CTCTTC	2 cut(s)	95, 138
EarI	CTCTTC	2 cut(s)	95, 138
Ecl136II	GAGCTC	2 cut(s)	127, 1101
Eco147I	AGGCCT	1 cut(s)	38
Eco24I	GRGCYC	2 cut(s)	129, 1103
Eco31I	GGTCTC	1 cut(s)	1166
Eco53kI	GAGCTC	2 cut(s)	127, 1101
Eco57I	CTGAAG	4 cut(s)	428, 1059, 1065, 1218
Eco81I	CCTNAGG	1 cut(s)	287
EcoICRI	GAGCTC	2 cut(s)	127, 1101
EcoRI	GAATTC	1 cut(s)	1405
EcoRII	CCWGG	4 cut(s)	258, 415, 1154, 1314
EcoT22I	ATGCAT	1 cut(s)	765
EcoT38I	GRGCYC	2 cut(s)	129, 1103
Esp3I	CGTCTC	1 cut(s)	331
FaeI	CATG	4 cut(s)	692, 767, 806, 1396
FalI	AAGNNNNNCTT	4 cut(s)	135, 167, 1463, 1495
FatI	CATG	4 cut(s)	688, 763, 802, 1392
FauNDI	CATATG	1 cut(s)	487
FblI	GTMKAC	1 cut(s)	1145
Fnu4HI	GCNGC	4 cut(s)	75, 78, 496, 1053
FokI	GGATG	4 cut(s)	169, 433, 618, 739
FriOI	GRGCYC	2 cut(s)	129, 1103
Fsp4HI	GCNGC	4 cut(s)	75, 78, 496, 1053
FspBI	CTAG	5 cut(s)	671, 782, 839, 1149, 1323
GlaI	GCGC	3 cut(s)	81, 150, 1373
GluI	GCNGC	4 cut(s)	75, 78, 496, 1053
GsuI	CTGGAG	2 cut(s)	242, 341
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	38, 893
HgaI	GACGC	1 cut(s)	941
HhaI	GCGC	3 cut(s)	82, 151, 1374
Hin1II	CATG	4 cut(s)	692, 767, 806, 1396
Hin6I	GCGC	3 cut(s)	80, 149, 1372
HinP1I	GCGC	3 cut(s)	80, 149, 1372
HincII	GTYRAC	3 cut(s)	224, 1146, 1194
HindII	GTYRAC	3 cut(s)	224, 1146, 1194
HinfI	GANTC	6 cut(s)	185, 220, 512, 518, 618, 1283
HpaI	GTTAAC	1 cut(s)	1194
HphI	GGTGA	5 cut(s)	209, 387, 725, 909, 1068
Hpy166II	GTNNAC	4 cut(s)	224, 942, 1146, 1194
Hpy188III	TCNNGA	4 cut(s)	383, 551, 666, 1497
Hpy8I	GTNNAC	4 cut(s)	224, 942, 1146, 1194
Hpy99I	CGWCG	1 cut(s)	1498
HpyAV	CCTTC	8 cut(s)	28, 61, 319, 710, 877, 924, 1089, 1162
HpyCH4III	ACNGT	2 cut(s)	408, 1143
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 157, 166, 1262
HpyF3I	CTNAG	9 cut(s)	12, 164, 189, 287, 524, 588, 612, 1164, 1349
Hsp92II	CATG	4 cut(s)	692, 767, 806, 1396
HspAI	GCGC	3 cut(s)	80, 149, 1372
KspAI	GTTAAC	1 cut(s)	1194
Kzo9I	GATC	3 cut(s)	313, 529, 925
LmnI	GCTCC	2 cut(s)	132, 261
Lsp1109I	GCAGC	2 cut(s)	507, 1064
LweI	GCATC	7 cut(s)	147, 596, 1064, 1075, 1307, 1473, 1499
MabI	ACCWGGT	1 cut(s)	1314
MaeI	CTAG	5 cut(s)	671, 782, 839, 1149, 1323
MaeIII	GTNAC	5 cut(s)	281, 393, 503, 733, 1074
MalI	GATC	3 cut(s)	315, 531, 927
MboI	GATC	3 cut(s)	313, 529, 925
MfeI	CAATTG	1 cut(s)	1089
MflI	RGATCY	1 cut(s)	925
MhlI	GDGCHC	3 cut(s)	129, 346, 1103
MlyI	GAGTC	1 cut(s)	229
Mph1103I	ATGCAT	1 cut(s)	765
MseI	TTAA	4 cut(s)	171, 438, 465, 1193
MslI	CAYNNNNRTG	5 cut(s)	180, 537, 807, 947, 1308
MspR9I	CCNGG	4 cut(s)	260, 417, 1156, 1316
MunI	CAATTG	1 cut(s)	1089
MvaI	CCWGG	4 cut(s)	260, 417, 1156, 1316
MvnI	CGCG	2 cut(s)	44, 82
MwoI	GCNNNNNNNGC	4 cut(s)	71, 157, 166, 1262
NdeI	CATATG	1 cut(s)	487
NdeII	GATC	3 cut(s)	313, 529, 925
NlaIII	CATG	4 cut(s)	692, 767, 806, 1396
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	3 cut(s)	281, 393, 1074
NsiI	ATGCAT	1 cut(s)	765
NspI	RCATGY	3 cut(s)	692, 806, 1396
PaeI	GCATGC	3 cut(s)	692, 806, 1396
PaqCI	CACCTGC	1 cut(s)	489
PceI	AGGCCT	1 cut(s)	38
PfeI	GAWTC	5 cut(s)	185, 512, 518, 618, 1283
PflFI	GACNNNGTC	1 cut(s)	1316
PfoI	TCCNGGA	1 cut(s)	258
PkrI	GCNGC	4 cut(s)	76, 79, 497, 1054
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PshBI	ATTAAT	1 cut(s)	465
Psp124BI	GAGCTC	2 cut(s)	129, 1103
Psp6I	CCWGG	4 cut(s)	258, 415, 1154, 1314
PspGI	CCWGG	4 cut(s)	258, 415, 1154, 1314
PstNI	CAGNNNCTG	1 cut(s)	1058
PsuI	RGATCY	1 cut(s)	925
PsyI	GACNNNGTC	1 cut(s)	1316
RsaI	GTAC	4 cut(s)	309, 852, 907, 1140
RsaNI	GTAC	4 cut(s)	308, 851, 906, 1139
RseI	CAYNNNNRTG	5 cut(s)	180, 537, 807, 947, 1308
SacI	GAGCTC	2 cut(s)	129, 1103
SalI	GTCGAC	1 cut(s)	1144
SaqAI	TTAA	4 cut(s)	171, 438, 465, 1193
SatI	GCNGC	4 cut(s)	75, 78, 496, 1053
Sau3AI	GATC	3 cut(s)	313, 529, 925
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	4 cut(s)	260, 417, 1156, 1316
SduI	GDGCHC	3 cut(s)	129, 346, 1103
SexAI	ACCWGGT	1 cut(s)	1314
SfaNI	GCATC	7 cut(s)	147, 596, 1064, 1075, 1307, 1473, 1499
SfcI	CTRYAG	1 cut(s)	1460
SmiMI	CAYNNNNRTG	5 cut(s)	180, 537, 807, 947, 1308
SmlI	CTYRAG	2 cut(s)	217, 381
SmoI	CTYRAG	2 cut(s)	217, 381
SpeI	ACTAGT	1 cut(s)	670
SphI	GCATGC	3 cut(s)	692, 806, 1396
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	3 cut(s)	44, 74, 77
SspMI	CTAG	5 cut(s)	671, 782, 839, 1149, 1323
SstI	GAGCTC	2 cut(s)	129, 1103
StuI	AGGCCT	1 cut(s)	38
StyD4I	CCNGG	4 cut(s)	258, 415, 1154, 1314
TaaI	ACNGT	2 cut(s)	408, 1143
TaqI	TCGA	4 cut(s)	316, 563, 1145, 1475
TaqII	GACCGA	1 cut(s)	985
TatI	WGTACW	3 cut(s)	307, 905, 1138
TauI	GCSGC	2 cut(s)	77, 80
TfiI	GAWTC	5 cut(s)	185, 512, 518, 618, 1283
Tru1I	TTAA	4 cut(s)	171, 438, 465, 1193
Tru9I	TTAA	4 cut(s)	171, 438, 465, 1193
TscAI	CASTG	4 cut(s)	351, 413, 985, 1186
TseFI	GTSAC	3 cut(s)	281, 393, 1074
TseI	GCWGC	2 cut(s)	495, 1052
Tsp45I	GTSAC	3 cut(s)	281, 393, 1074
TspDTI	ATGAA	6 cut(s)	224, 533, 663, 688, 696, 1296
TspGWI	ACGGA	2 cut(s)	611, 959
TspRI	CASTG	4 cut(s)	351, 413, 985, 1186
Tth111I	GACNNNGTC	1 cut(s)	1316
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	4 cut(s)	358, 554, 1240, 1405
XceI	RCATGY	3 cut(s)	692, 806, 1396
XmiI	GTMKAC	1 cut(s)	1145
XspI	CTAG	5 cut(s)	671, 782, 839, 1149, 1323
Zsp2I	ATGCAT	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.