MD09G1042200.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
2742135 .. 2744785
2651 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1042200.v1.1.491

Sequence Viewer

Length: 1545 bp
ATGACGAGGGAAGATGCATCATTTTCCTACAATCCGATACCTGAGCCTATCATACTATCTTCTTCAGCTACAGGACATGAAACTATTCCAACTTCTGGCCCGAAGAACATCAAAGCAAATAGAGGTATTGAGCATAAGTGCTGTAATGAAATGAAACGAAGTGTTTCTGATTTGGATAAATTTTTTGCACCTGACTCTGACCTTGCCTCAATAATCATGAGACCCAAGGAGCCTGAGCTGCTCAGAAATGGATGCACACAGAGAATTCGTGCTTTTGAAAGAAACTTACTTGATGATAAACCGCTGCCTTCTGGATATGTAGACAATAGCATTTGCCATGAGAAGAATGAGTTGGTCATCAAAGCAAATGACAAGGAGGAAGAAAAGTGTGGTTCACCCTCTTTTAGCGACAACAGCGTGGAAGAAGTTAATGGCCCATCTTTGGAAGAGACCAAAAGGAATGCTAAAGCGCACACATTACGAAGAAGGCAGACTGGATTTGGGAAAGCCAAAACCTCGGGCCGATATCGTCCTAGTGAGCTCATGAAATCTCACCAACAAACTTCTGTTCCTTCTCGTTGTAGAGTATATTCAGTCAATGGAAAAGATAGTTCTCAAAAAGAAGCTTGCATCCTGCCCTCTATCAAGACCAAGAATGTAGACATGACAGGAACTTCCAGTGGGTTGGAAGAAAGTTCGCAGCATAGTAGCTGCTATTTCATGGACAGAGTTAAGAATATTCCGAAGGGAAAAAGAAAAAGGAAAATGAAAAGTAAGAATGACATTACAACCTCACTCACGAGTACTGATCAGCCGTCTTCTGTTCTGTCCCGCTGCAGGACTTTTGCGTATTTACTTTATGGTGGTGTGAAATCTTGGGAAGATCAACCAATCACAACTGAAAATGCGGCTAAGATGAAGTCATTGCCCCGTCTGGATCCTGGGTTGATATTAATGAGAAATGATGTGGATCCTATATCAGGGTCAGCTAGTGTCACGGTGAGCATGAAGGGGATGAATAAATCTGGAACTGTCCAGGATGCAGCAGACAAGGACATGGAGTTGATAGATGTGCCTGTGTTGATGACGGAAAGTGATGGTATTGAGAATTCAGAGGCCCCGAATTCTGAACTCGACCTTTGTTCTGTTGATGTATCACTAATGAACTCCAAGTTAAAAACTGTCAAAGTGTCATTGATGAATTCTGAACTAGAACATGTGAATGCATCATTGGTGAAATCTGAATTAAATGATGCAAGTGCATTATTGATGAGTTCTGAATTAAAAGATGTGAGAGCATCAGAACAATCAAATGGATCTCCTAGTCGTGTGGACAACAGCAGACTTCTCAAGTACACATTCCAGAGGAAGCGCAAGAATTCCTCAAGGAACCCTGGTGAAGAGAGCACTGCTAAGAGGAGGATGGAAGAGAAGGAATGTGTTGCACAACAGCCACAAACGACAGATGAATTATCTAGGGACAGCCGGCGACTAGCTCAGGTTGCTCGACAGCTCATATCATTGTCTGGGAAGAGATGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

515

Amino Acids

57.14

Weight (kDa)

8.85

Isoelectric Point (pI)

55.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 95
AccI GTMKAC 2 cut(s) 321, 660
AciI CCGC 3 cut(s) 302, 832, 908
AclWI GGATC 5 cut(s) 932, 945, 965, 978, 1324
AcsI RAATTY 6 cut(s) 179, 264, 1108, 1123, 1201, 1378
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 2 cut(s) 805, 1355
AfiI CCNNNNNNNGG 4 cut(s) 95, 442, 837, 980
AflIII ACRYGT 1 cut(s) 1216
AgsI TTSAA 1 cut(s) 278
AjnI CCWGG 3 cut(s) 940, 1035, 1393
AjuI GAANNNNNNNTTGG 4 cut(s) 335, 367, 1214, 1246
AluBI AGCT 8 cut(s) 68, 238, 541, 626, 711, 989, 1496, 1513
AluI AGCT 8 cut(s) 68, 238, 541, 626, 711, 989, 1496, 1513
Alw21I GWGCWC 2 cut(s) 543, 1409
Alw26I GTCTC 2 cut(s) 214, 443
AlwI GGATC 5 cut(s) 932, 945, 965, 978, 1324
Ama87I CYCGRG 1 cut(s) 517
AoxI GGCC 4 cut(s) 97, 433, 520, 1116
ApeKI GCWGC 6 cut(s) 238, 304, 700, 711, 834, 1043
ApoI RAATTY 6 cut(s) 179, 264, 1108, 1123, 1201, 1378
AseI ATTAAT 1 cut(s) 953
Asp700I GAANNNNTTC 2 cut(s) 84, 163
AspLEI GCGC 2 cut(s) 472, 1374
AspS9I GGNCC 4 cut(s) 98, 434, 520, 1117
AsuHPI GGTGA 5 cut(s) 387, 545, 1012, 1246, 1409
AvaI CYCGRG 1 cut(s) 517
BamHI GGATCC 2 cut(s) 937, 970
BanII GRGCYC 1 cut(s) 543
BauI CACGAG 1 cut(s) 799
BbsI GAAGAC 1 cut(s) 810
Bbv12I GWGCWC 2 cut(s) 543, 1409
BbvI GCAGC 6 cut(s) 225, 291, 698, 712, 821, 1055
BccI CCATC 4 cut(s) 445, 1091, 1417, 1530
BceAI ACGGC 1 cut(s) 799
BciT130I CCWGG 3 cut(s) 942, 1037, 1395
BclI TGATCA 1 cut(s) 808
BcoDI GTCTC 2 cut(s) 214, 443
BfaI CTAG 6 cut(s) 534, 990, 1211, 1323, 1476, 1493
BfmI CTRYAG 2 cut(s) 69, 835
BisI GCNGC 7 cut(s) 239, 305, 701, 712, 835, 909, 1044
BlsI GCNGC 7 cut(s) 240, 306, 702, 713, 836, 910, 1045
BmcAI AGTACT 1 cut(s) 805
Bme1390I CCNGG 3 cut(s) 942, 1037, 1395
BmeT110I CYCGRG 1 cut(s) 517
BmgT120I GGNCC 4 cut(s) 98, 434, 520, 1117
BmiI GGNNCC 5 cut(s) 231, 939, 972, 1119, 1391
BmrFI CCNGG 3 cut(s) 942, 1037, 1395
BmsI GCATC 8 cut(s) 4, 26, 242, 639, 1030, 1235, 1243, 1307
BpiI GAAGAC 1 cut(s) 810
Bpu10I CCTNAGC 3 cut(s) 42, 234, 1497
BpuEI CTTGAG 2 cut(s) 1334, 1369
BsaBI GATNNNNATC 1 cut(s) 969
BsaI GGTCTC 2 cut(s) 214, 443
BsaJI CCNNGG 4 cut(s) 225, 516, 941, 1393
Bsc4I CCNNNNNNNGG 4 cut(s) 95, 442, 837, 980
Bse118I RCCGGY 1 cut(s) 1485
Bse1I ACTGG 2 cut(s) 499, 678
Bse3DI GCAATG 1 cut(s) 923
Bse8I GATNNNNATC 1 cut(s) 969
BseBI CCWGG 3 cut(s) 942, 1037, 1395
BseDI CCNNGG 4 cut(s) 225, 516, 941, 1393
BseGI GGATG 5 cut(s) 257, 630, 1020, 1045, 1428
BseJI GATNNNNATC 1 cut(s) 969
BseLI CCNNNNNNNGG 4 cut(s) 95, 442, 837, 980
BseMI GCAATG 1 cut(s) 923
BseMII CTCAG 4 cut(s) 33, 225, 256, 1511
BseNI ACTGG 2 cut(s) 499, 678
BseRI GAGGAG 1 cut(s) 1432
BseXI GCAGC 6 cut(s) 225, 291, 698, 712, 821, 1055
BshFI GGCC 4 cut(s) 99, 435, 522, 1118
BsiHKAI GWGCWC 2 cut(s) 543, 1409
BsiHKCI CYCGRG 1 cut(s) 517
BsiSI CCGG 1 cut(s) 1486
BslFI GGGAC 2 cut(s) 814, 1493
BslI CCNNNNNNNGG 4 cut(s) 95, 442, 837, 980
BsmAI GTCTC 2 cut(s) 214, 443
BsmFI GGGAC 2 cut(s) 814, 1493
BsmI GAATGC 2 cut(s) 466, 1228
BsnI GGCC 4 cut(s) 99, 435, 522, 1118
Bso31I GGTCTC 2 cut(s) 214, 443
BsoBI CYCGRG 1 cut(s) 517
Bsp1286I GDGCHC 2 cut(s) 543, 1409
Bsp143I GATC 5 cut(s) 808, 883, 937, 970, 1316
BspACI CCGC 3 cut(s) 302, 832, 908
BspANI GGCC 4 cut(s) 99, 435, 522, 1118
BspCNI CTCAG 4 cut(s) 34, 226, 255, 1510
BspHI TCATGA 2 cut(s) 216, 543
BspLI GGNNCC 5 cut(s) 231, 939, 972, 1119, 1391
BspMAI CTGCAG 1 cut(s) 839
BspPI GGATC 5 cut(s) 932, 945, 965, 978, 1324
BspTNI GGTCTC 2 cut(s) 214, 443
BsrDI GCAATG 1 cut(s) 923
BsrFI RCCGGY 1 cut(s) 1485
BsrI ACTGG 2 cut(s) 499, 678
BssAI RCCGGY 1 cut(s) 1485
BssECI CCNNGG 4 cut(s) 225, 516, 941, 1393
BssMI GATC 5 cut(s) 808, 883, 937, 970, 1316
BssSI CACGAG 1 cut(s) 799
BssT1I CCWWGG 1 cut(s) 225
Bst2BI CACGAG 1 cut(s) 799
Bst2UI CCWGG 3 cut(s) 942, 1037, 1395
Bst4CI ACNGT 3 cut(s) 1000, 1033, 1183
Bst6I CTCTTC 4 cut(s) 441, 1395, 1422, 1526
BstC8I GCNNGC 2 cut(s) 628, 1487
BstDEI CTNAG 6 cut(s) 42, 234, 242, 912, 1413, 1497
BstENI CCTNNNNNAGG 1 cut(s) 978
BstF5I GGATG 5 cut(s) 257, 630, 1020, 1045, 1428
BstHHI GCGC 2 cut(s) 472, 1374
BstKTI GATC 5 cut(s) 811, 886, 940, 973, 1319
BstMAI GTCTC 2 cut(s) 214, 443
BstMBI GATC 5 cut(s) 808, 883, 937, 970, 1316
BstMWI GCNNNNNNNGC 3 cut(s) 238, 414, 1502
BstNI CCWGG 3 cut(s) 942, 1037, 1395
BstNSI RCATGY 1 cut(s) 1220
BstSCI CCNGG 3 cut(s) 940, 1035, 1393
BstSFI CTRYAG 2 cut(s) 69, 835
BstV1I GCAGC 6 cut(s) 225, 291, 698, 712, 821, 1055
BstV2I GAAGAC 1 cut(s) 810
BstX2I RGATCY 3 cut(s) 937, 970, 1316
BstXI CCANNNNNNTGG 1 cut(s) 685
BstYI RGATCY 3 cut(s) 937, 970, 1316
BsuRI GGCC 4 cut(s) 99, 435, 522, 1118
BtsCI GGATG 5 cut(s) 257, 630, 1020, 1045, 1428
BtsI GCAGTG 1 cut(s) 1407
BtsIMutI CAGTG 2 cut(s) 685, 1407
Cac8I GCNNGC 2 cut(s) 628, 1487
CciI TCATGA 2 cut(s) 216, 543
CfoI GCGC 2 cut(s) 472, 1374
Cfr10I RCCGGY 1 cut(s) 1485
Cfr13I GGNCC 4 cut(s) 98, 434, 520, 1117
Csp6I GTAC 2 cut(s) 804, 1354
CviAII CATG 9 cut(s) 77, 217, 338, 544, 664, 721, 1006, 1057, 1217
CviQI GTAC 2 cut(s) 804, 1354
DdeI CTNAG 6 cut(s) 42, 234, 242, 912, 1413, 1497
DpnI GATC 5 cut(s) 810, 885, 939, 972, 1318
DpnII GATC 5 cut(s) 808, 883, 937, 970, 1316
Eam1104I CTCTTC 4 cut(s) 441, 1395, 1422, 1526
EarI CTCTTC 4 cut(s) 441, 1395, 1422, 1526
Ecl136II GAGCTC 1 cut(s) 541
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 543
Eco31I GGTCTC 2 cut(s) 214, 443
Eco32I GATATC 1 cut(s) 527
Eco53kI GAGCTC 1 cut(s) 541
Eco57I CTGAAG 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 517
EcoICRI GAGCTC 1 cut(s) 541
EcoNI CCTNNNNNAGG 1 cut(s) 978
EcoO109I RGGNCCY 1 cut(s) 1117
EcoRI GAATTC 5 cut(s) 264, 1108, 1123, 1201, 1378
EcoRII CCWGG 3 cut(s) 940, 1035, 1393
EcoRV GATATC 1 cut(s) 527
EcoT14I CCWWGG 1 cut(s) 225
EcoT22I ATGCAT 2 cut(s) 19, 1228
EcoT38I GRGCYC 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 9 cut(s) 80, 220, 341, 547, 667, 724, 1009, 1060, 1220
FaqI GGGAC 2 cut(s) 814, 1493
FatI CATG 9 cut(s) 76, 216, 337, 543, 663, 720, 1005, 1056, 1216
FauI CCCGC 1 cut(s) 839
FbaI TGATCA 1 cut(s) 808
FblI GTMKAC 2 cut(s) 321, 660
Fnu4HI GCNGC 7 cut(s) 239, 305, 701, 712, 835, 909, 1044
FokI GGATG 5 cut(s) 264, 617, 1027, 1052, 1435
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 7 cut(s) 239, 305, 701, 712, 835, 909, 1044
FspBI CTAG 6 cut(s) 534, 990, 1211, 1323, 1476, 1493
GlaI GCGC 2 cut(s) 471, 1373
GluI GCNGC 7 cut(s) 239, 305, 701, 712, 835, 909, 1044
HaeIII GGCC 4 cut(s) 99, 435, 522, 1118
HapII CCGG 1 cut(s) 1486
HhaI GCGC 2 cut(s) 472, 1374
Hin1II CATG 9 cut(s) 80, 220, 341, 547, 667, 724, 1009, 1060, 1220
Hin6I GCGC 2 cut(s) 470, 1372
HinP1I GCGC 2 cut(s) 470, 1372
HindIII AAGCTT 1 cut(s) 624
HinfI GANTC 1 cut(s) 194
HpaII CCGG 1 cut(s) 1486
HphI GGTGA 5 cut(s) 387, 545, 1012, 1246, 1409
Hpy166II GTNNAC 5 cut(s) 322, 395, 661, 1333, 1356
Hpy188III TCNNGA 8 cut(s) 217, 312, 544, 646, 799, 935, 1026, 1363
Hpy8I GTNNAC 5 cut(s) 322, 395, 661, 1333, 1356
HpyAV CCTTC 6 cut(s) 318, 480, 582, 739, 1003, 1426
HpyCH4III ACNGT 3 cut(s) 1000, 1033, 1183
HpyF10VI GCNNNNNNNGC 3 cut(s) 238, 414, 1502
HpyF3I CTNAG 6 cut(s) 42, 234, 242, 912, 1413, 1497
Hsp92II CATG 9 cut(s) 80, 220, 341, 547, 667, 724, 1009, 1060, 1220
HspAI GCGC 2 cut(s) 470, 1372
KroI GCCGGC 1 cut(s) 1485
KroNI GCCGGC 1 cut(s) 1487
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 5 cut(s) 808, 883, 937, 970, 1316
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 6 cut(s) 225, 291, 698, 712, 821, 1055
LweI GCATC 8 cut(s) 4, 26, 242, 639, 1030, 1235, 1243, 1307
MaeI CTAG 6 cut(s) 534, 990, 1211, 1323, 1476, 1493
MaeIII GTNAC 1 cut(s) 994
MalI GATC 5 cut(s) 810, 885, 939, 972, 1318
MboI GATC 5 cut(s) 808, 883, 937, 970, 1316
MflI RGATCY 3 cut(s) 937, 970, 1316
MhlI GDGCHC 2 cut(s) 543, 1409
MluCI AATT 9 cut(s) 179, 264, 1108, 1123, 1201, 1244, 1280, 1378, 1469
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 2 cut(s) 113, 666
Mph1103I ATGCAT 2 cut(s) 19, 1228
MroNI GCCGGC 1 cut(s) 1485
MroXI GAANNNNTTC 2 cut(s) 84, 163
MseI TTAA 7 cut(s) 429, 732, 953, 1175, 1247, 1283, 1543
MslI CAYNNNNRTG 1 cut(s) 1221
MspA1I CMGCKG 2 cut(s) 304, 834
MspI CCGG 1 cut(s) 1486
MspR9I CCNGG 3 cut(s) 942, 1037, 1395
Mva1269I GAATGC 2 cut(s) 466, 1228
MvaI CCWGG 3 cut(s) 942, 1037, 1395
MwoI GCNNNNNNNGC 3 cut(s) 238, 414, 1502
NaeI GCCGGC 1 cut(s) 1487
NdeII GATC 5 cut(s) 808, 883, 937, 970, 1316
NgoMIV GCCGGC 1 cut(s) 1485
NlaIII CATG 9 cut(s) 80, 220, 341, 547, 667, 724, 1009, 1060, 1220
NlaIV GGNNCC 5 cut(s) 231, 939, 972, 1119, 1391
NmuCI GTSAC 1 cut(s) 994
NsiI ATGCAT 2 cut(s) 19, 1228
NspI RCATGY 1 cut(s) 1220
PagI TCATGA 2 cut(s) 216, 543
PciI ACATGT 1 cut(s) 1216
PctI GAATGC 2 cut(s) 466, 1228
PdiI GCCGGC 1 cut(s) 1487
PdmI GAANNNNTTC 2 cut(s) 84, 163
PflMI CCANNNNNTGG 1 cut(s) 95
PfoI TCCNGGA 1 cut(s) 1035
PkrI GCNGC 7 cut(s) 240, 306, 702, 713, 836, 910, 1045
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PscI ACATGT 1 cut(s) 1216
PshBI ATTAAT 1 cut(s) 953
Psp124BI GAGCTC 1 cut(s) 543
Psp6I CCWGG 3 cut(s) 940, 1035, 1393
PspGI CCWGG 3 cut(s) 940, 1035, 1393
PspN4I GGNNCC 5 cut(s) 231, 939, 972, 1119, 1391
PspPI GGNCC 4 cut(s) 98, 434, 520, 1117
PstI CTGCAG 1 cut(s) 839
PsuI RGATCY 3 cut(s) 937, 970, 1316
RsaI GTAC 2 cut(s) 805, 1355
RsaNI GTAC 2 cut(s) 804, 1354
RseI CAYNNNNRTG 1 cut(s) 1221
SacI GAGCTC 1 cut(s) 543
SaqAI TTAA 7 cut(s) 429, 732, 953, 1175, 1247, 1283, 1543
SatI GCNGC 7 cut(s) 239, 305, 701, 712, 835, 909, 1044
Sau3AI GATC 5 cut(s) 808, 883, 937, 970, 1316
Sau96I GGNCC 4 cut(s) 98, 434, 520, 1117
ScaI AGTACT 1 cut(s) 805
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 3 cut(s) 942, 1037, 1395
SduI GDGCHC 2 cut(s) 543, 1409
SfaNI GCATC 8 cut(s) 4, 26, 242, 639, 1030, 1235, 1243, 1307
SfcI CTRYAG 2 cut(s) 69, 835
SmiMI CAYNNNNRTG 1 cut(s) 1221
SmlI CTYRAG 2 cut(s) 1349, 1384
SmoI CTYRAG 2 cut(s) 1349, 1384
Sse9I AATT 9 cut(s) 179, 264, 1108, 1123, 1201, 1244, 1280, 1378, 1469
SsiI CCGC 3 cut(s) 302, 832, 908
SspI AATATT 1 cut(s) 739
SspMI CTAG 6 cut(s) 534, 990, 1211, 1323, 1476, 1493
SstI GAGCTC 1 cut(s) 543
StyD4I CCNGG 3 cut(s) 940, 1035, 1393
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 3 cut(s) 1000, 1033, 1183
TaqI TCGA 2 cut(s) 1134, 1507
TasI AATT 9 cut(s) 179, 264, 1108, 1123, 1201, 1244, 1280, 1378, 1469
TatI WGTACW 2 cut(s) 803, 1353
TauI GCSGC 1 cut(s) 911
Tru1I TTAA 7 cut(s) 429, 732, 953, 1175, 1247, 1283, 1543
Tru9I TTAA 7 cut(s) 429, 732, 953, 1175, 1247, 1283, 1543
TscAI CASTG 2 cut(s) 685, 1414
TseFI GTSAC 1 cut(s) 994
TseI GCWGC 6 cut(s) 238, 304, 700, 711, 834, 1043
Tsp45I GTSAC 1 cut(s) 994
TspGWI ACGGA 1 cut(s) 1103
TspRI CASTG 2 cut(s) 685, 1414
Van91I CCANNNNNTGG 1 cut(s) 95
VspI ATTAAT 1 cut(s) 953
XagI CCTNNNNNAGG 1 cut(s) 978
XapI RAATTY 6 cut(s) 179, 264, 1108, 1123, 1201, 1378
XceI RCATGY 1 cut(s) 1220
XmiI GTMKAC 2 cut(s) 321, 660
XmnI GAANNNNTTC 2 cut(s) 84, 163
XspI CTAG 6 cut(s) 534, 990, 1211, 1323, 1476, 1493
ZrmI AGTACT 1 cut(s) 805
Zsp2I ATGCAT 2 cut(s) 19, 1228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.