Prupe.3G275400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0002918
Physical Location & Seq
Forward (+)
25387922 .. 25391450
3529 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G275400.1

Sequence Viewer

Length: 303 bp
ATGGTGGCTCTGAAGAAGGCGTACGCGGAGATTATTCTGAATACAGCGAAGGAGGCAGCGGCGAGAGTAATGGCGTCGGAGCACAAAGCTCTTCGCTTTCAGCACGATCTGCGTTCTACCAAAGACGAGTCGCTTCGCGTGCTTCTCCGCTTAAAGCAAATGATCGATTCCAAGACAAGTGAAGCAGAGATAACATCCTCGAGCCAACAAAGAAGGATTGATGAGCTTGAAGCACAGCTCCAAGAGGCAGAGGATATCATAACTGATTTGAGATCTGTTAAGGAAGATACCTCCATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.37

Weight (kDa)

5.7

Isoelectric Point (pI)

67.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 26, 138
AciI CCGC 3 cut(s) 26, 59, 148
AcuI CTGAAG 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 74
AfaI GTAC 1 cut(s) 23
AgsI TTSAA 1 cut(s) 230
AluBI AGCT 3 cut(s) 89, 226, 238
AluI AGCT 3 cut(s) 89, 226, 238
Alw21I GWGCWC 1 cut(s) 84
Ama87I CYCGRG 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 56
AseI ATTAAT 1 cut(s) 297
AvaI CYCGRG 1 cut(s) 199
BarI GAAGNNNNNNTAC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 68
BglII AGATCT 1 cut(s) 272
BisI GCNGC 2 cut(s) 57, 60
BlsI GCNGC 2 cut(s) 58, 61
BmeT110I CYCGRG 1 cut(s) 199
Bsa29I ATCGAT 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 74
BseCI ATCGAT 1 cut(s) 165
BseGI GGATG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 68
Bsh1236I CGCG 2 cut(s) 26, 138
BshVI ATCGAT 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 199
BsiWI CGTACG 1 cut(s) 21
BsoBI CYCGRG 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 3 cut(s) 106, 162, 272
BspACI CCGC 3 cut(s) 26, 59, 148
BspDI ATCGAT 1 cut(s) 165
BspFNI CGCG 2 cut(s) 26, 138
BspQI GCTCTTC 1 cut(s) 96
BssMI GATC 3 cut(s) 106, 162, 272
BssNI GRCGYC 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 74
BstAPI GCANNNNNTGC 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 140
BstF5I GGATG 1 cut(s) 194
BstFNI CGCG 2 cut(s) 26, 138
BstKTI GATC 3 cut(s) 109, 165, 275
BstMBI GATC 3 cut(s) 106, 162, 272
BstMWI GCNNNNNNNGC 3 cut(s) 53, 109, 139
BstUI CGCG 2 cut(s) 26, 138
BstV1I GCAGC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
Bsu15I ATCGAT 1 cut(s) 165
BsuTUI ATCGAT 1 cut(s) 165
BtsCI GGATG 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 140
ClaI ATCGAT 1 cut(s) 165
CseI GACGC 1 cut(s) 63
Csp6I GTAC 1 cut(s) 22
CviJI RGCY 5 cut(s) 8, 89, 204, 226, 238
CviKI_1 RGCY 5 cut(s) 8, 89, 204, 226, 238
CviQI GTAC 1 cut(s) 22
DpnI GATC 3 cut(s) 108, 164, 274
DpnII GATC 3 cut(s) 106, 162, 272
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco32I GATATC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 199
EcoRV GATATC 1 cut(s) 256
FaiI YATR 1 cut(s) 260
Fnu4HI GCNGC 2 cut(s) 57, 60
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 2 cut(s) 57, 60
GluI GCNGC 2 cut(s) 57, 60
HgaI GACGC 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 74
HinfI GANTC 2 cut(s) 128, 167
Hpy188I TCNGA 3 cut(s) 12, 39, 79
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 3 cut(s) 10, 43, 207
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 109, 139
Hsp92I GRCGYC 1 cut(s) 74
Kzo9I GATC 3 cut(s) 106, 162, 272
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 2 cut(s) 79, 243
Lsp1109I GCAGC 1 cut(s) 68
MalI GATC 3 cut(s) 108, 164, 274
MboI GATC 3 cut(s) 106, 162, 272
MboII GAAGA 3 cut(s) 25, 83, 296
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 1 cut(s) 298
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 5 cut(s) 46, 208, 238, 244, 301
MseI TTAA 3 cut(s) 152, 279, 297
MspA1I CMGCKG 1 cut(s) 59
MvnI CGCG 2 cut(s) 26, 138
MwoI GCNNNNNNNGC 3 cut(s) 53, 109, 139
NdeII GATC 3 cut(s) 106, 162, 272
PaeR7I CTCGAG 1 cut(s) 199
PciSI GCTCTTC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 167
Pfl23II CGTACG 1 cut(s) 21
PkrI GCNGC 2 cut(s) 58, 61
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PshBI ATTAAT 1 cut(s) 297
PspLI CGTACG 1 cut(s) 21
PspXI VCTCGAGB 1 cut(s) 199
PsuI RGATCY 1 cut(s) 272
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 3 cut(s) 152, 279, 297
SatI GCNGC 2 cut(s) 57, 60
Sau3AI GATC 3 cut(s) 106, 162, 272
SchI GAGTC 1 cut(s) 137
SduI GDGCHC 1 cut(s) 84
SetI ASST 4 cut(s) 91, 228, 240, 293
Sfr274I CTCGAG 1 cut(s) 199
SlaI CTCGAG 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 1 cut(s) 298
SsiI CCGC 3 cut(s) 26, 59, 148
TaqI TCGA 2 cut(s) 165, 200
TasI AATT 1 cut(s) 298
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 3 cut(s) 152, 279, 297
Tru9I TTAA 3 cut(s) 152, 279, 297
TseI GCWGC 1 cut(s) 56
VspI ATTAAT 1 cut(s) 297
XhoI CTCGAG 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.