Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002918

Physical Location & Seq

Genomic Coordinates Reverse (-)

15185442 .. 15186621

Gene Structure 1180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G181500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTGTAACACGCCTAAACCAAAGGTTGGCAATACGCATGGGGTAGAGAAGAACCAAGAACAACTGAAAGTGATGCAGCTACATGGTAGCCATATTCAAGCACCTGCCTTTAAGTCCTTTCAAAATAAGAGGAAAAGAGCTGCTAGATATAGGAGGAGCAAAGCTCCCTCATGCAGGTATCTTCCTCATCAGTTCAAGCAAATGCACCAAGATCTATCCTGCACCATTACTTCTGCTTCTTCAGTCAATAACAATGTTCTCACAGATAATGCTTCCAAGAAATATGAAAATGAAATTCGAAAAGTCACAGAATCCGTTTTGACCCCAAAATTACTCTCAGATACAACTGAAATGAGTACACGGTCCAGATGCTCTAACGTAACTGACAATGATGCAGGGTTTGTTAGACCTTGTAGTGTTCAGAAGGCAATGGACAATGATAAGATGATCATTGAAGAATCAGAATTGACCAAACAGGAATGTTTATCTGCAGAAAAATTGGAGATTCTGGCTTGCAAAACAGATGTTGAGAAAGATAATAGACCATTAAATAAGTCGGATATGAGAGCATCTGATTTAGATGGTGGCACTGCTAGTCAACCTGCAGACAATAAGTTTCTTAAATATACATTCTGCAGAAAGCGCAAGAAGGAGACATTGAGCAGCCCTGAAAGTTGGATGAGAACTGTAGAATGCTACTTACTAATACCCTACGCATATTCTCTTGCACAGCTTATATCTTTGTCAGAGAAGAAGTGGTGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

29.14

Weight (kDa)

9.31

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19010 AT1G19010 AT1G74860
fragaria_vesca	FvH4_5g16190 FvH4_5g16190 FvH4_6g49700 FvH4_6g49700
malus_domestica	MD06G1183100.v1.1 MD09G1042200.v1.1 MD14G1189100.v1.1 MD17G1043600.v1.1
prunus_persica	Prupe.3G275400_v2.0.a1 Prupe.3G275500_v2.0.a1 Prupe.5G181500_v2.0.a1 Prupe.5G181800_v2.0.a1
pyrus_communis	pycom06g16210 pycom111g03310 pycom14g15680 pycom17g03890
rosa_chinensis	RchiOBHm_Chr2g0169731 RchiOBHm_Chr7g0179941
rosa_laevigata	RLG00000005308 RLG00000021897
rosa_multiflora	Rmu_ssc0000247.1_g000001 Rmu_ssc0000389.1_g000031
rosa_roxburghii	Rroxscaffold_2G00081840 Rroxscaffold_3G00273290
rosa_rugosa	Rorug02G0542500 Rorug06G0429300
rosa_samantha	Rh2BG627000 Rh2CG596500 Rh2DG637900 Rh7AG029800 Rh7BG029000 Rh7CG030600 Rh7DG030000
rosa_wichuraiana	Rw2G050970 Rw7G002380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	3 cut(s)	112, 165, 610
AccB7I	CCANNNNNTGG	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	2 cut(s)	26, 174
AgsI	TTSAA	4 cut(s)	98, 122, 196, 455
AluBI	AGCT	4 cut(s)	79, 140, 164, 733
AluI	AGCT	4 cut(s)	79, 140, 164, 733
Alw26I	GTCTC	1 cut(s)	647
ApeKI	GCWGC	3 cut(s)	76, 140, 663
ApoI	RAATTY	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	1 cut(s)	363
AsuII	TTCGAA	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	363
BbvI	GCAGC	3 cut(s)	88, 127, 675
BccI	CCATC	1 cut(s)	575
BclI	TGATCA	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	647
BfaI	CTAG	2 cut(s)	144, 594
BfmI	CTRYAG	4 cut(s)	489, 603, 634, 687
BfuAI	ACCTGC	3 cut(s)	112, 165, 610
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	3 cut(s)	77, 141, 664
BlsI	GCNGC	3 cut(s)	78, 142, 665
Bme18I	GGWCC	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	363
BmsI	GCATC	4 cut(s)	63, 359, 382, 578
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
Bpu14I	TTCGAA	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 174
Bse3DI	GCAATG	1 cut(s)	435
BseGI	GGATG	1 cut(s)	684
BseLI	CCNNNNNNNGG	2 cut(s)	26, 174
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	169
BseXI	GCAGC	3 cut(s)	88, 127, 675
BsgI	GTGCAG	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	26, 174
BsmAI	GTCTC	1 cut(s)	647
BsmI	GAATGC	1 cut(s)	698
Bsp119I	TTCGAA	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	211, 447
BspCNI	CTCAG	1 cut(s)	350
BspMAI	CTGCAG	3 cut(s)	493, 607, 638
BspMI	ACCTGC	3 cut(s)	112, 165, 610
BspT104I	TTCGAA	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	435
BssMI	GATC	2 cut(s)	211, 447
Bst4CI	ACNGT	2 cut(s)	363, 688
BstBI	TTCGAA	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	1 cut(s)	337
BstENI	CCTNNNNNAGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	684
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	2 cut(s)	214, 450
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	2 cut(s)	211, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	642
BstSFI	CTRYAG	4 cut(s)	489, 603, 634, 687
BstV1I	GCAGC	3 cut(s)	88, 127, 675
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	684
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	1 cut(s)	588
BveI	ACCTGC	3 cut(s)	112, 165, 610
Cac8I	GCNNGC	1 cut(s)	514
CfoI	GCGC	1 cut(s)	645
Cfr13I	GGNCC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	3 cut(s)	38, 83, 171
CviJI	RGCY	7 cut(s)	79, 90, 140, 164, 512, 666, 733
CviKI_1	RGCY	7 cut(s)	79, 90, 140, 164, 512, 666, 733
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	2 cut(s)	213, 449
DpnII	GATC	2 cut(s)	211, 447
Eco47I	GGWCC	1 cut(s)	363
Eco57I	CTGAAG	1 cut(s)	225
EcoNI	CCTNNNNNAGG	1 cut(s)	172
FaeI	CATG	3 cut(s)	41, 86, 174
FatI	CATG	3 cut(s)	37, 82, 170
FbaI	TGATCA	1 cut(s)	447
Fnu4HI	GCNGC	3 cut(s)	77, 141, 664
FokI	GGATG	1 cut(s)	691
Fsp4HI	GCNGC	3 cut(s)	77, 141, 664
FspBI	CTAG	2 cut(s)	144, 594
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	3 cut(s)	77, 141, 664
HhaI	GCGC	1 cut(s)	645
Hin1II	CATG	3 cut(s)	41, 86, 174
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HincII	GTYRAC	1 cut(s)	599
HindII	GTYRAC	1 cut(s)	599
HinfI	GANTC	3 cut(s)	311, 458, 505
Hpy166II	GTNNAC	2 cut(s)	359, 599
Hpy188I	TCNGA	6 cut(s)	340, 423, 463, 559, 574, 748
Hpy188III	TCNNGA	1 cut(s)	366
Hpy8I	GTNNAC	2 cut(s)	359, 599
HpyAV	CCTTC	2 cut(s)	418, 643
HpyCH4III	ACNGT	2 cut(s)	363, 688
HpyCH4IV	ACGT	1 cut(s)	378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	642
HpyF3I	CTNAG	1 cut(s)	337
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	3 cut(s)	41, 86, 174
HspAI	GCGC	1 cut(s)	643
Ksp22I	TGATCA	1 cut(s)	447
Kzo9I	GATC	2 cut(s)	211, 447
LmnI	GCTCC	2 cut(s)	156, 169
LpnPI	CCDG	9 cut(s)	117, 160, 232, 379, 381, 461, 494, 615, 681
Lsp1109I	GCAGC	3 cut(s)	88, 127, 675
LweI	GCATC	4 cut(s)	63, 359, 382, 578
MaeI	CTAG	2 cut(s)	144, 594
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	3 cut(s)	5, 304, 379
MalI	GATC	2 cut(s)	213, 449
MboI	GATC	2 cut(s)	211, 447
MboII	GAAGA	5 cut(s)	61, 173, 231, 467, 763
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	4 cut(s)	294, 329, 464, 497
MmeI	TCCRAC	2 cut(s)	537, 656
MnlI	CCTC	4 cut(s)	123, 147, 178, 195
MseI	TTAA	3 cut(s)	111, 548, 621
Mva1269I	GAATGC	1 cut(s)	698
MwoI	GCNNNNNNNGC	1 cut(s)	642
NdeII	GATC	2 cut(s)	211, 447
NlaIII	CATG	3 cut(s)	41, 86, 174
NmuCI	GTSAC	1 cut(s)	304
NspV	TTCGAA	1 cut(s)	298
PaqCI	CACCTGC	1 cut(s)	112
PctI	GAATGC	1 cut(s)	698
PfeI	GAWTC	3 cut(s)	311, 458, 505
PflMI	CCANNNNNTGG	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	78, 142, 665
PspPI	GGNCC	1 cut(s)	363
PstI	CTGCAG	3 cut(s)	493, 607, 638
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	111, 548, 621
SatI	GCNGC	3 cut(s)	77, 141, 664
Sau3AI	GATC	2 cut(s)	211, 447
Sau96I	GGNCC	1 cut(s)	363
SfaNI	GCATC	4 cut(s)	63, 359, 382, 578
SfcI	CTRYAG	4 cut(s)	489, 603, 634, 687
SfuI	TTCGAA	1 cut(s)	298
SinI	GGWCC	1 cut(s)	363
Sse9I	AATT	4 cut(s)	294, 329, 464, 497
SspMI	CTAG	2 cut(s)	144, 594
TaaI	ACNGT	2 cut(s)	363, 688
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	1 cut(s)	298
TasI	AATT	4 cut(s)	294, 329, 464, 497
TatI	WGTACW	1 cut(s)	356
TfiI	GAWTC	3 cut(s)	311, 458, 505
Tru1I	TTAA	3 cut(s)	111, 548, 621
Tru9I	TTAA	3 cut(s)	111, 548, 621
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	3 cut(s)	76, 140, 663
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	300, 306
TspGWI	ACGGA	1 cut(s)	304
TspRI	CASTG	1 cut(s)	595
Van91I	CCANNNNNTGG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	363
XagI	CCTNNNNNAGG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	294
XspI	CTAG	2 cut(s)	144, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.