Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002918

Physical Location & Seq

Genomic Coordinates Reverse (-)

20581043 .. 20583519

Gene Structure 2477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g16210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGCTTCTCAGGCTCAAACAAATGTTGGATTCCAAGGATGACGAGGCAAAGACGATGTCTTTGAGTCAACAAGAAAAGATTGACGAACTCGAAGCCCAGCTGCAGGAAGCTGAGGATATAGTGAAGGAGCTTAGGGAAGAGTTGAGTGAAGTGCAGGCTCAACTGGAGAAGGCGAGAAGTAATCCAAGACAGTTGGATGAGCAAAATTTAGAGGGTAATACTGCTGCTCGAGGGTCAATAACATCGCAATTGAATTCAGTTTCGAATGGGACGTATGATTCTCTTAAGGATAATTACTGTGCTTGTAATCCTGATTTCGCCTCGCTAGTAATGAGAGGTAAACAGCCTGAGTTATACAGAAATGGATGCACTCAGAGAATTCGTGCATTTGAAAGAAACCTGTTGGATGAAAAATTCTCTCTTTCCGGACTTGTTGATGATGGGAAGAATGGAACATTCATCAGAGGAGATGATGAACATCTGCATAAAACCCCTAAACCGAATGGTGATAATACAAATGGGTTAGAGAAGAACCCAAAACTGAAAGTGAGGCAGGCAGATGGTAGCCATATTCAAGCACCTGCCGTTAAGTCCTTCCAGAAGAAGAGAAAGAGAGCAGCTAGATTTAGGAGAAGCAAAGCTCCCTCATGCAGGTATCTTGATCCTCATCAGTTGATGGAAATGCGCCAAGTATCTGATTTCTCGTGCTCTAGAACTTCTGCTTCCTCACTCAATAGCAGTGTTCTCACAGATAATGCTTCAAAGAAGTCTGAAGATGAAATTCAAAAAGTCACATCATCCATTTCGATCCCAAAACTGCCCTTGGATACAACTGAAATGAGTACACAGTCCGAATGTGCTAATGTTACTGAAAATGATAGTGGTCAGAAAGCAACAATGTTTGTTGAAGAATCCAGATTGACCGGGCAGGAAAGTGTCTCTGCCGAGAGTCTGGTGGTTCTGTCATGCAAAAGAGATGTTGAGAAAGATTATCCATTACATAAGTCAAATACGAAAGTATCCAATTTAGATGATGGCACTGCTAGTCAACCTGAAAACAATAAATTTCTCAAATATACATTCTGCAGAAAGCGCAAGAAGGGCACGCTAAACAACCCTGAAAGCGAGTCCCTTCTTGACAATAACACTTTGGAAAGGAAGACAGTCGAGGAACAAAATGGTTCTCTAGAGCCACAGAAGTCAAGCTTGTTGCTCAAATCATCTCGGGACAGTCGACGACTAGCACAGGTTGCTCGTCAGCTTATATCTTTGTCGGAGAAGTGGTGGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

431

Amino Acids

48.46

Weight (kDa)

8.0

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19010 AT1G19010 AT1G74860
fragaria_vesca	FvH4_5g16190 FvH4_5g16190 FvH4_6g49700 FvH4_6g49700
malus_domestica	MD06G1183100.v1.1 MD09G1042200.v1.1 MD14G1189100.v1.1 MD17G1043600.v1.1
prunus_persica	Prupe.3G275400_v2.0.a1 Prupe.3G275500_v2.0.a1 Prupe.5G181500_v2.0.a1 Prupe.5G181800_v2.0.a1
pyrus_communis	pycom06g16210 pycom111g03310 pycom14g15680 pycom17g03890
rosa_chinensis	RchiOBHm_Chr2g0169731 RchiOBHm_Chr7g0179941
rosa_laevigata	RLG00000005308 RLG00000021897
rosa_multiflora	Rmu_ssc0000247.1_g000001 Rmu_ssc0000389.1_g000031
rosa_roxburghii	Rroxscaffold_2G00081840 Rroxscaffold_3G00273290
rosa_rugosa	Rorug02G0542500 Rorug06G0429300
rosa_samantha	Rh2BG627000 Rh2CG596500 Rh2DG637900 Rh7AG029800 Rh7BG029000 Rh7CG030600 Rh7DG030000
rosa_wichuraiana	Rw2G050970 Rw7G002380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	589
Acc36I	ACCTGC	2 cut(s)	589, 642
AccI	GTMKAC	1 cut(s)	1234
AccIII	TCCGGA	1 cut(s)	425
AclWI	GGATC	2 cut(s)	656, 802
AcsI	RAATTY	6 cut(s)	205, 253, 378, 413, 780, 1064
AcuI	CTGAAG	1 cut(s)	792
AfaI	GTAC	1 cut(s)	844
AfiI	CCNNNNNNNGG	2 cut(s)	103, 651
AflII	CTTAAG	1 cut(s)	284
AgsI	TTSAA	6 cut(s)	253, 392, 575, 762, 785, 908
AluBI	AGCT	7 cut(s)	100, 110, 130, 620, 641, 1206, 1261
AluI	AGCT	7 cut(s)	100, 110, 130, 620, 641, 1206, 1261
Alw21I	GWGCWC	1 cut(s)	710
Alw26I	GTCTC	1 cut(s)	943
AlwI	GGATC	2 cut(s)	656, 802
Ama87I	CYCGRG	2 cut(s)	228, 1224
Aor13HI	TCCGGA	1 cut(s)	425
ApeKI	GCWGC	3 cut(s)	100, 224, 617
ApoI	RAATTY	6 cut(s)	205, 253, 378, 413, 780, 1064
ArsI	GACNNNNNNTTYG	4 cut(s)	41, 43, 73, 75
AspLEI	GCGC	2 cut(s)	687, 1095
AsuC2I	CCSGG	1 cut(s)	925
AsuHPI	GGTGA	1 cut(s)	518
AsuII	TTCGAA	1 cut(s)	263
AvaI	CYCGRG	2 cut(s)	228, 1224
BaeGI	GKGCMC	1 cut(s)	1106
BaeI	ACNNNNGTAYC	2 cut(s)	1002, 1035
BauI	CACGAG	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	1166
Bbv12I	GWGCWC	1 cut(s)	710
BbvCI	CCTCAGC	1 cut(s)	111
BbvI	GCAGC	3 cut(s)	87, 211, 629
BccI	CCATC	4 cut(s)	434, 554, 670, 1028
BceAI	ACGGC	1 cut(s)	569
BciVI	GTATCC	2 cut(s)	820, 1030
BcnI	CCSGG	1 cut(s)	925
BcoDI	GTCTC	1 cut(s)	943
BfaI	CTAG	6 cut(s)	326, 621, 711, 1044, 1187, 1241
BfmI	CTRYAG	2 cut(s)	101, 1084
BfrI	CTTAAG	1 cut(s)	284
BfuAI	ACCTGC	2 cut(s)	589, 642
BfuI	GTATCC	2 cut(s)	820, 1030
BisI	GCNGC	3 cut(s)	101, 225, 618
BlsI	GCNGC	3 cut(s)	102, 226, 619
Bme1390I	CCNGG	1 cut(s)	925
BmeT110I	CYCGRG	2 cut(s)	228, 1224
BmrFI	CCNGG	1 cut(s)	925
BmsI	GCATC	1 cut(s)	356
BpiI	GAAGAC	1 cut(s)	1166
BpmI	CTGGAG	1 cut(s)	185
Bpu10I	CCTNAGC	2 cut(s)	111, 131
Bpu14I	TTCGAA	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	925
BsaBI	GATNNNNATC	2 cut(s)	477, 666
BsaJI	CCNNGG	2 cut(s)	33, 822
BsaWI	WCCGGW	1 cut(s)	425
BsaXI	ACNNNNNCTCC	1 cut(s)	1268
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 651
Bse1I	ACTGG	1 cut(s)	168
Bse8I	GATNNNNATC	2 cut(s)	477, 666
BseAI	TCCGGA	1 cut(s)	425
BseDI	CCNNGG	2 cut(s)	33, 822
BseGI	GGATG	5 cut(s)	43, 202, 371, 412, 797
BseJI	GATNNNNATC	2 cut(s)	477, 666
BseLI	CCNNNNNNNGG	2 cut(s)	103, 651
BseMII	CTCAG	4 cut(s)	22, 102, 339, 386
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	480
BseSI	GKGCMC	1 cut(s)	1106
BseXI	GCAGC	3 cut(s)	87, 211, 629
BseYI	CCCAGC	1 cut(s)	96
BsgI	GTGCAG	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	710
BsiHKCI	CYCGRG	2 cut(s)	228, 1224
BsiSI	CCGG	2 cut(s)	426, 924
BslFI	GGGAC	3 cut(s)	283, 1114, 1241
BslI	CCNNNNNNNGG	2 cut(s)	103, 651
BsmAI	GTCTC	1 cut(s)	943
BsmFI	GGGAC	3 cut(s)	283, 1114, 1241
BsoBI	CYCGRG	2 cut(s)	228, 1224
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	710, 1106
Bsp13I	TCCGGA	1 cut(s)	425
Bsp143I	GATC	2 cut(s)	661, 807
BspCNI	CTCAG	4 cut(s)	21, 103, 340, 385
BspEI	TCCGGA	1 cut(s)	425
BspMAI	CTGCAG	2 cut(s)	105, 1088
BspMI	ACCTGC	2 cut(s)	589, 642
BspPI	GGATC	2 cut(s)	656, 802
BspT104I	TTCGAA	1 cut(s)	263
BspTI	CTTAAG	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	33, 822
BssMI	GATC	2 cut(s)	661, 807
BssSI	CACGAG	1 cut(s)	703
BssT1I	CCWWGG	2 cut(s)	33, 822
Bst2BI	CACGAG	1 cut(s)	703
Bst4CI	ACNGT	5 cut(s)	192, 299, 849, 1165, 1232
Bst6I	CTCTTC	2 cut(s)	132, 599
BstAFI	CTTAAG	1 cut(s)	284
BstAPI	GCANNNNNTGC	1 cut(s)	1250
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	3 cut(s)	156, 555, 1106
BstDEI	CTNAG	5 cut(s)	8, 111, 131, 348, 372
BstENI	CCTNNNNNAGG	1 cut(s)	649
BstF5I	GGATG	5 cut(s)	43, 202, 371, 412, 797
BstHHI	GCGC	2 cut(s)	687, 1095
BstKTI	GATC	2 cut(s)	664, 810
BstMAI	GTCTC	1 cut(s)	943
BstMBI	GATC	2 cut(s)	661, 807
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 1092, 1101, 1250
BstSCI	CCNGG	1 cut(s)	923
BstSFI	CTRYAG	2 cut(s)	101, 1084
BstSLI	GKGCMC	1 cut(s)	1106
BstV1I	GCAGC	3 cut(s)	87, 211, 629
BstV2I	GAAGAC	1 cut(s)	1166
BsuI	GTATCC	2 cut(s)	820, 1030
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	5 cut(s)	43, 202, 371, 412, 797
BtsI	GCAGTG	2 cut(s)	745, 1038
BtsIMutI	CAGTG	2 cut(s)	745, 1038
BveI	ACCTGC	2 cut(s)	589, 642
Cac8I	GCNNGC	3 cut(s)	156, 555, 1106
CfoI	GCGC	2 cut(s)	687, 1095
Csp6I	GTAC	1 cut(s)	843
CviAII	CATG	2 cut(s)	648, 966
CviQI	GTAC	1 cut(s)	843
DdeI	CTNAG	5 cut(s)	8, 111, 131, 348, 372
DpnI	GATC	2 cut(s)	663, 809
DpnII	GATC	2 cut(s)	661, 807
Eam1104I	CTCTTC	2 cut(s)	132, 599
EarI	CTCTTC	2 cut(s)	132, 599
Eco130I	CCWWGG	2 cut(s)	33, 822
Eco57I	CTGAAG	1 cut(s)	792
Eco88I	CYCGRG	2 cut(s)	228, 1224
EcoNI	CCTNNNNNAGG	1 cut(s)	649
EcoRI	GAATTC	2 cut(s)	253, 378
EcoT14I	CCWWGG	2 cut(s)	33, 822
ErhI	CCWWGG	2 cut(s)	33, 822
FaeI	CATG	2 cut(s)	651, 969
FalI	AAGNNNNNCTT	2 cut(s)	1190, 1222
FaqI	GGGAC	3 cut(s)	283, 1114, 1241
FatI	CATG	2 cut(s)	647, 965
FblI	GTMKAC	1 cut(s)	1234
Fnu4HI	GCNGC	3 cut(s)	101, 225, 618
FokI	GGATG	5 cut(s)	50, 209, 378, 419, 784
Fsp4HI	GCNGC	3 cut(s)	101, 225, 618
FspBI	CTAG	6 cut(s)	326, 621, 711, 1044, 1187, 1241
GlaI	GCGC	2 cut(s)	686, 1094
GluI	GCNGC	3 cut(s)	101, 225, 618
GsaI	CCCAGC	1 cut(s)	100
GsuI	CTGGAG	1 cut(s)	185
HapII	CCGG	2 cut(s)	426, 924
HhaI	GCGC	2 cut(s)	687, 1095
Hin1II	CATG	2 cut(s)	651, 969
Hin6I	GCGC	2 cut(s)	685, 1093
HinP1I	GCGC	2 cut(s)	685, 1093
HincII	GTYRAC	3 cut(s)	68, 1049, 1235
HindII	GTYRAC	3 cut(s)	68, 1049, 1235
HindIII	AAGCTT	1 cut(s)	1204
HinfI	GANTC	6 cut(s)	29, 64, 278, 911, 949, 1127
HpaII	CCGG	2 cut(s)	426, 924
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	5 cut(s)	68, 341, 845, 1049, 1235
Hpy188I	TCNGA	7 cut(s)	375, 464, 697, 772, 853, 888, 1276
Hpy188III	TCNNGA	9 cut(s)	311, 426, 598, 659, 711, 915, 1136, 1187, 1226
Hpy8I	GTNNAC	5 cut(s)	68, 341, 845, 1049, 1235
Hpy99I	CGWCG	1 cut(s)	1239
HpyAV	CCTTC	5 cut(s)	118, 163, 604, 1093, 1142
HpyCH4III	ACNGT	5 cut(s)	192, 299, 849, 1165, 1232
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	8 cut(s)	103, 154, 369, 386, 484, 651, 969, 1086
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 1092, 1101, 1250
HpyF3I	CTNAG	5 cut(s)	8, 111, 131, 348, 372
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	2 cut(s)	651, 969
HspAI	GCGC	2 cut(s)	685, 1093
Kpn2I	TCCGGA	1 cut(s)	425
Kzo9I	GATC	2 cut(s)	661, 807
LmnI	GCTCC	2 cut(s)	127, 646
Lsp1109I	GCAGC	3 cut(s)	87, 211, 629
LweI	GCATC	1 cut(s)	356
MaeI	CTAG	6 cut(s)	326, 621, 711, 1044, 1187, 1241
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	790, 865
MalI	GATC	2 cut(s)	663, 809
MboI	GATC	2 cut(s)	661, 807
MboII	GAAGA	8 cut(s)	149, 457, 541, 613, 616, 785, 920, 1171
MfeI	CAATTG	1 cut(s)	248
MhlI	GDGCHC	2 cut(s)	710, 1106
MluCI	AATT	9 cut(s)	205, 248, 253, 292, 378, 413, 780, 1024, 1064
MlyI	GAGTC	3 cut(s)	73, 958, 1136
MmeI	TCCRAC	4 cut(s)	6, 174, 384, 1254
MroI	TCCGGA	1 cut(s)	425
MseI	TTAA	2 cut(s)	285, 588
MspA1I	CMGCKG	1 cut(s)	100
MspCI	CTTAAG	1 cut(s)	284
MspI	CCGG	2 cut(s)	426, 924
MspR9I	CCNGG	1 cut(s)	925
MunI	CAATTG	1 cut(s)	248
MwoI	GCNNNNNNNGC	4 cut(s)	10, 1092, 1101, 1250
NciI	CCSGG	1 cut(s)	925
NdeII	GATC	2 cut(s)	661, 807
NlaIII	CATG	2 cut(s)	651, 969
NmeAIII	GCCGAG	1 cut(s)	970
NmuCI	GTSAC	1 cut(s)	790
NspV	TTCGAA	1 cut(s)	263
PaeR7I	CTCGAG	1 cut(s)	228
PaqCI	CACCTGC	1 cut(s)	589
PcsI	WCGNNNNNNNCGW	2 cut(s)	269, 1231
PfeI	GAWTC	3 cut(s)	29, 278, 911
PflFI	GACNNNGTC	1 cut(s)	55
PkrI	GCNGC	3 cut(s)	102, 226, 619
PleI	GAGTC	3 cut(s)	72, 957, 1135
PpsI	GAGTC	3 cut(s)	72, 957, 1135
PspFI	CCCAGC	1 cut(s)	96
PspXI	VCTCGAGB	1 cut(s)	228
PstI	CTGCAG	2 cut(s)	105, 1088
PsyI	GACNNNGTC	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	844
RsaNI	GTAC	1 cut(s)	843
SalI	GTCGAC	1 cut(s)	1233
SaqAI	TTAA	2 cut(s)	285, 588
SatI	GCNGC	3 cut(s)	101, 225, 618
Sau3AI	GATC	2 cut(s)	661, 807
SchI	GAGTC	3 cut(s)	73, 958, 1136
ScrFI	CCNGG	1 cut(s)	925
SduI	GDGCHC	2 cut(s)	710, 1106
SfaNI	GCATC	1 cut(s)	356
SfcI	CTRYAG	2 cut(s)	101, 1084
Sfr274I	CTCGAG	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	263
SlaI	CTCGAG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	228, 284
SmoI	CTYRAG	2 cut(s)	228, 284
Sse9I	AATT	9 cut(s)	205, 248, 253, 292, 378, 413, 780, 1024, 1064
SspMI	CTAG	6 cut(s)	326, 621, 711, 1044, 1187, 1241
StyD4I	CCNGG	1 cut(s)	923
StyI	CCWWGG	2 cut(s)	33, 822
TaaI	ACNGT	5 cut(s)	192, 299, 849, 1165, 1232
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	6 cut(s)	90, 229, 263, 806, 1167, 1234
TasI	AATT	9 cut(s)	205, 248, 253, 292, 378, 413, 780, 1024, 1064
TatI	WGTACW	1 cut(s)	842
TfiI	GAWTC	3 cut(s)	29, 278, 911
Tru1I	TTAA	2 cut(s)	285, 588
Tru9I	TTAA	2 cut(s)	285, 588
TscAI	CASTG	2 cut(s)	745, 1045
TseFI	GTSAC	1 cut(s)	790
TseI	GCWGC	3 cut(s)	100, 224, 617
Tsp45I	GTSAC	1 cut(s)	790
TspDTI	ATGAA	4 cut(s)	423, 448, 489, 792
TspRI	CASTG	2 cut(s)	745, 1045
Tth111I	GACNNNGTC	1 cut(s)	55
Vha464I	CTTAAG	1 cut(s)	284
XagI	CCTNNNNNAGG	1 cut(s)	649
XapI	RAATTY	6 cut(s)	205, 253, 378, 413, 780, 1064
XbaI	TCTAGA	2 cut(s)	710, 1186
XhoI	CTCGAG	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	1234
XspI	CTAG	6 cut(s)	326, 621, 711, 1044, 1187, 1241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.