Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000247.1

Orthogroup ID

OG0002918

Physical Location & Seq

Genomic Coordinates Reverse (-)

835 .. 2130

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000247.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

atgaagtccttgagtcaacagggaaagattgatgagcttgaagcacagctccaggaagccgaggatatagtgagtgaccttaggggagagttgagtgaagtacaggatcgactggagaaggcaaaaaagagacgagcactggataggcaaaatttagaggttgatactactgctcaagaaaagatgtcacagaatggacagtgttttccagggatgataacatctcaacttaatcttcaggcagatgtggtggcaattaatggcaaaaagtttgagacatatgagggcagcaggtgttacattgaatctgattctcttagggatcataactatgttcatactcctgaatttgcctcgatagtaatgacaagtaaagagcctgagttatacagaaatggatgcactcagagaatccgtgcttttgaaagatacatgtttgatgaaaagttgtctctttctggactagttgatgatgaaaagcatgcaacattcatcggaggaaatggtgaaggcaaagggatgtctgtaacacctataccaaagtttgactatatgcatgaggtagagaagaacctagtagaattgaaagtgaagcatgcggatgagagccataggagagaaaaagaacagctagaaatagaagtacctgcaattttgtccttctgcaaaaagagaagaagaacggccagaaatagaagtacatctccttcacccacagatcttcctcatcagttcatggaaatgcgccaagtttctggtttatcctgctgcactgcttctcctacttgggtcaatgacaatggttttacaggtaattctgccaagaaatctgaagataaagttgcagcatctgtttcaagcccaaagtcaccttcagatgcaattgaaatgagctcacattcagcatttgatatggttattgatagtgaagtacagttgactagaccctggactgctcagaaggagaccaacactgataagttattaactgaagaaagtgaattgaccggacaagaatggttatctgcaaaaagtttggaggttctggcttgcaatgcagatattcagaaagatgaatcagttttggaagcatctcatttagatgacctggtcgctagtcaaactgaaagcaataagtttctcagatatacattccacagaaagcgcaaaagggagactatgagcatgcctgaaacgaattcccagaatggcactttggagggaaagacaagggagacaaaaattggttctctgcagcaacagaagtcgagcttgatgcctgcatcgtcgggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

431

Amino Acids

48.53

Weight (kDa)

5.57

Isoelectric Point (pI)

57.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19010 AT1G19010 AT1G74860
fragaria_vesca	FvH4_5g16190 FvH4_5g16190 FvH4_6g49700 FvH4_6g49700
malus_domestica	MD06G1183100.v1.1 MD09G1042200.v1.1 MD14G1189100.v1.1 MD17G1043600.v1.1
prunus_persica	Prupe.3G275400_v2.0.a1 Prupe.3G275500_v2.0.a1 Prupe.5G181500_v2.0.a1 Prupe.5G181800_v2.0.a1
pyrus_communis	pycom06g16210 pycom111g03310 pycom14g15680 pycom17g03890
rosa_chinensis	RchiOBHm_Chr2g0169731 RchiOBHm_Chr7g0179941
rosa_laevigata	RLG00000005308 RLG00000021897
rosa_multiflora	Rmu_ssc0000247.1_g000001 Rmu_ssc0000389.1_g000031
rosa_roxburghii	Rroxscaffold_2G00081840 Rroxscaffold_3G00273290
rosa_rugosa	Rorug02G0542500 Rorug06G0429300
rosa_samantha	Rh2BG627000 Rh2CG596500 Rh2DG637900 Rh7AG029800 Rh7BG029000 Rh7CG030600 Rh7DG030000
rosa_wichuraiana	Rw2G050970 Rw7G002380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	282
Acc36I	ACCTGC	2 cut(s)	282, 655
AciI	CCGC	1 cut(s)	599
AclWI	GGATC	2 cut(s)	114, 330
AcoI	YGGCCR	1 cut(s)	684
AcsI	RAATTY	3 cut(s)	151, 347, 1198
AcuI	CTGAAG	4 cut(s)	221, 852, 858, 1011
AfaI	GTAC	4 cut(s)	102, 645, 700, 933
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	6 cut(s)	41, 305, 425, 586, 858, 887
AhlI	ACTAGT	1 cut(s)	463
AjnI	CCWGG	4 cut(s)	51, 208, 947, 1107
AjuI	GAANNNNNNNTTGG	4 cut(s)	856, 888, 1199, 1231
AluBI	AGCT	5 cut(s)	37, 49, 631, 894, 1272
AluI	AGCT	5 cut(s)	37, 49, 631, 894, 1272
Alw21I	GWGCWC	2 cut(s)	139, 896
Alw26I	GTCTC	6 cut(s)	124, 269, 456, 959, 1169, 1229
AlwI	GGATC	2 cut(s)	114, 330
AlwNI	CAGNNNCTG	1 cut(s)	851
AoxI	GGCC	1 cut(s)	684
ApeKI	GCWGC	4 cut(s)	288, 768, 845, 1255
ApoI	RAATTY	3 cut(s)	151, 347, 1198
AseI	ATTAAT	1 cut(s)	258
AspLEI	GCGC	2 cut(s)	747, 1167
AsuHPI	GGTGA	3 cut(s)	518, 702, 861
AxyI	CCTNAGG	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	896
BarI	GAAGNNNNNNTAC	2 cut(s)	691, 723
Bbv12I	GWGCWC	2 cut(s)	139, 896
BbvI	GCAGC	4 cut(s)	300, 755, 857, 1267
BceAI	ACGGC	1 cut(s)	699
BcgI	CGANNNNNNTGC	2 cut(s)	1258, 1292
BciT130I	CCWGG	4 cut(s)	53, 210, 949, 1109
BcoDI	GTCTC	6 cut(s)	124, 269, 456, 959, 1169, 1229
BcuI	ACTAGT	1 cut(s)	463
BfaI	CTAG	5 cut(s)	464, 575, 632, 942, 1116
BfmI	CTRYAG	1 cut(s)	1253
BfuAI	ACCTGC	2 cut(s)	282, 655
BglII	AGATCT	1 cut(s)	718
BisI	GCNGC	4 cut(s)	289, 769, 846, 1256
BlsI	GCNGC	4 cut(s)	290, 770, 847, 1257
Bme1390I	CCNGG	4 cut(s)	53, 210, 949, 1109
BmrFI	CCNGG	4 cut(s)	53, 210, 949, 1109
BmsI	GCATC	6 cut(s)	389, 857, 868, 1100, 1266, 1292
BpmI	CTGGAG	2 cut(s)	35, 134
BpuEI	CTTGAG	2 cut(s)	31, 159
BsaI	GGTCTC	1 cut(s)	959
BsaJI	CCNNGG	3 cut(s)	60, 209, 947
BsaWI	WCCGGW	1 cut(s)	1007
BsaXI	ACNNNNNCTCC	2 cut(s)	763, 793
Bse1I	ACTGG	2 cut(s)	117, 144
Bse21I	CCTNAGG	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	1060
BseBI	CCWGG	4 cut(s)	53, 210, 949, 1109
BseDI	CCNNGG	3 cut(s)	60, 209, 947
BseGI	GGATG	4 cut(s)	219, 404, 525, 607
BseMI	GCAATG	1 cut(s)	1060
BseMII	CTCAG	4 cut(s)	372, 419, 971, 1156
BseNI	ACTGG	2 cut(s)	117, 144
BseXI	GCAGC	4 cut(s)	300, 755, 857, 1267
BsgI	GTGCAG	1 cut(s)	754
BshFI	GGCC	1 cut(s)	686
BsiHKAI	GWGCWC	2 cut(s)	139, 896
BsiSI	CCGG	1 cut(s)	1008
BsmAI	GTCTC	6 cut(s)	124, 269, 456, 959, 1169, 1229
BsmBI	CGTCTC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	686
Bso31I	GGTCTC	1 cut(s)	959
Bsp1286I	GDGCHC	2 cut(s)	139, 896
Bsp143I	GATC	3 cut(s)	106, 322, 718
BspACI	CCGC	1 cut(s)	599
BspANI	GGCC	1 cut(s)	686
BspCNI	CTCAG	4 cut(s)	373, 418, 970, 1155
BspMAI	CTGCAG	1 cut(s)	1257
BspMI	ACCTGC	2 cut(s)	282, 655
BspPI	GGATC	2 cut(s)	114, 330
BspTNI	GGTCTC	1 cut(s)	959
BsrDI	GCAATG	1 cut(s)	1060
BsrI	ACTGG	2 cut(s)	117, 144
BssECI	CCNNGG	3 cut(s)	60, 209, 947
BssMI	GATC	3 cut(s)	106, 322, 718
Bst2UI	CCWGG	4 cut(s)	53, 210, 949, 1109
Bst4CI	ACNGT	2 cut(s)	201, 936
BstC8I	GCNNGC	5 cut(s)	483, 597, 1051, 1187, 1281
BstDEI	CTNAG	6 cut(s)	80, 317, 381, 405, 957, 1142
BstF5I	GGATG	4 cut(s)	219, 404, 525, 607
BstHHI	GCGC	2 cut(s)	747, 1167
BstKTI	GATC	3 cut(s)	109, 325, 721
BstMAI	GTCTC	6 cut(s)	124, 269, 456, 959, 1169, 1229
BstMBI	GATC	3 cut(s)	106, 322, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	1055
BstNI	CCWGG	4 cut(s)	53, 210, 949, 1109
BstNSI	RCATGY	4 cut(s)	436, 485, 599, 1189
BstSCI	CCNGG	4 cut(s)	51, 208, 947, 1107
BstSFI	CTRYAG	1 cut(s)	1253
BstV1I	GCAGC	4 cut(s)	300, 755, 857, 1267
BstX2I	RGATCY	1 cut(s)	718
BstXI	CCANNNNNNTGG	1 cut(s)	755
BstYI	RGATCY	1 cut(s)	718
Bsu36I	CCTNAGG	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	686
BtsCI	GGATG	4 cut(s)	219, 404, 525, 607
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	4 cut(s)	137, 206, 771, 972
BveI	ACCTGC	2 cut(s)	282, 655
Cac8I	GCNNGC	5 cut(s)	483, 597, 1051, 1187, 1281
CaiI	CAGNNNCTG	1 cut(s)	851
CfoI	GCGC	2 cut(s)	747, 1167
CsiI	ACCWGGT	1 cut(s)	1107
Csp6I	GTAC	4 cut(s)	101, 644, 699, 932
CviAII	CATG	6 cut(s)	433, 482, 557, 596, 736, 1186
CviQI	GTAC	4 cut(s)	101, 644, 699, 932
DdeI	CTNAG	6 cut(s)	80, 317, 381, 405, 957, 1142
DpnI	GATC	3 cut(s)	108, 324, 720
DpnII	GATC	3 cut(s)	106, 322, 718
EaeI	YGGCCR	1 cut(s)	684
Ecl136II	GAGCTC	1 cut(s)	894
Eco24I	GRGCYC	1 cut(s)	896
Eco31I	GGTCTC	1 cut(s)	959
Eco53kI	GAGCTC	1 cut(s)	894
Eco57I	CTGAAG	4 cut(s)	221, 852, 858, 1011
Eco81I	CCTNAGG	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	894
EcoRI	GAATTC	1 cut(s)	1198
EcoRII	CCWGG	4 cut(s)	51, 208, 947, 1107
EcoT22I	ATGCAT	1 cut(s)	558
EcoT38I	GRGCYC	1 cut(s)	896
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	6 cut(s)	436, 485, 560, 599, 739, 1189
FalI	AAGNNNNNCTT	2 cut(s)	1256, 1288
FatI	CATG	6 cut(s)	432, 481, 556, 595, 735, 1185
FauNDI	CATATG	1 cut(s)	280
Fnu4HI	GCNGC	4 cut(s)	289, 769, 846, 1256
FokI	GGATG	4 cut(s)	226, 411, 532, 614
FriOI	GRGCYC	1 cut(s)	896
Fsp4HI	GCNGC	4 cut(s)	289, 769, 846, 1256
FspBI	CTAG	5 cut(s)	464, 575, 632, 942, 1116
GlaI	GCGC	2 cut(s)	746, 1166
GluI	GCNGC	4 cut(s)	289, 769, 846, 1256
GsuI	CTGGAG	2 cut(s)	35, 134
HaeIII	GGCC	1 cut(s)	686
HapII	CCGG	1 cut(s)	1008
HhaI	GCGC	2 cut(s)	747, 1167
Hin1II	CATG	6 cut(s)	436, 485, 560, 599, 739, 1189
Hin6I	GCGC	2 cut(s)	745, 1165
HinP1I	GCGC	2 cut(s)	745, 1165
HincII	GTYRAC	2 cut(s)	17, 939
HindII	GTYRAC	2 cut(s)	17, 939
HinfI	GANTC	5 cut(s)	13, 305, 311, 411, 1076
HpaII	CCGG	1 cut(s)	1008
HphI	GGTGA	3 cut(s)	518, 702, 861
Hpy166II	GTNNAC	2 cut(s)	17, 939
Hpy188I	TCNGA	8 cut(s)	310, 408, 497, 832, 877, 960, 1068, 1145
Hpy188III	TCNNGA	4 cut(s)	176, 344, 459, 1290
Hpy8I	GTNNAC	2 cut(s)	17, 939
Hpy99I	CGWCG	1 cut(s)	1291
HpyAV	CCTTC	6 cut(s)	112, 503, 670, 717, 882, 955
HpyCH4III	ACNGT	2 cut(s)	201, 936
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1055
HpyF3I	CTNAG	6 cut(s)	80, 317, 381, 405, 957, 1142
Hsp92II	CATG	6 cut(s)	436, 485, 560, 599, 739, 1189
HspAI	GCGC	2 cut(s)	745, 1165
Kzo9I	GATC	3 cut(s)	106, 322, 718
LmnI	GCTCC	1 cut(s)	54
Lsp1109I	GCAGC	4 cut(s)	300, 755, 857, 1267
LweI	GCATC	6 cut(s)	389, 857, 868, 1100, 1266, 1292
MabI	ACCWGGT	1 cut(s)	1107
MaeI	CTAG	5 cut(s)	464, 575, 632, 942, 1116
MaeIII	GTNAC	5 cut(s)	74, 186, 296, 526, 867
MalI	GATC	3 cut(s)	108, 324, 720
MboI	GATC	3 cut(s)	106, 322, 718
MboII	GAAGA	7 cut(s)	227, 580, 687, 690, 713, 845, 1004
MfeI	CAATTG	1 cut(s)	882
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	2 cut(s)	139, 896
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	9 cut(s)	55, 151, 277, 364, 491, 553, 735, 1033, 1213
Mph1103I	ATGCAT	1 cut(s)	558
MseI	TTAA	3 cut(s)	231, 258, 986
MslI	CAYNNNNRTG	4 cut(s)	330, 600, 740, 1101
MspI	CCGG	1 cut(s)	1008
MspR9I	CCNGG	4 cut(s)	53, 210, 949, 1109
MunI	CAATTG	1 cut(s)	882
MvaI	CCWGG	4 cut(s)	53, 210, 949, 1109
MwoI	GCNNNNNNNGC	1 cut(s)	1055
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	3 cut(s)	106, 322, 718
NlaIII	CATG	6 cut(s)	436, 485, 560, 599, 739, 1189
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	3 cut(s)	74, 186, 867
NsiI	ATGCAT	1 cut(s)	558
NspI	RCATGY	4 cut(s)	436, 485, 599, 1189
PaeI	GCATGC	3 cut(s)	485, 599, 1189
PaqCI	CACCTGC	1 cut(s)	282
PciI	ACATGT	1 cut(s)	432
PfeI	GAWTC	4 cut(s)	305, 311, 411, 1076
PflFI	GACNNNGTC	1 cut(s)	1109
PfoI	TCCNGGA	1 cut(s)	51
PkrI	GCNGC	4 cut(s)	290, 770, 847, 1257
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PscI	ACATGT	1 cut(s)	432
PshBI	ATTAAT	1 cut(s)	258
Psp124BI	GAGCTC	1 cut(s)	896
Psp6I	CCWGG	4 cut(s)	51, 208, 947, 1107
PspGI	CCWGG	4 cut(s)	51, 208, 947, 1107
PstI	CTGCAG	1 cut(s)	1257
PstNI	CAGNNNCTG	1 cut(s)	851
PsuI	RGATCY	1 cut(s)	718
PsyI	GACNNNGTC	1 cut(s)	1109
RsaI	GTAC	4 cut(s)	102, 645, 700, 933
RsaNI	GTAC	4 cut(s)	101, 644, 699, 932
RseI	CAYNNNNRTG	4 cut(s)	330, 600, 740, 1101
SacI	GAGCTC	1 cut(s)	896
SaqAI	TTAA	3 cut(s)	231, 258, 986
SatI	GCNGC	4 cut(s)	289, 769, 846, 1256
Sau3AI	GATC	3 cut(s)	106, 322, 718
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	4 cut(s)	53, 210, 949, 1109
SduI	GDGCHC	2 cut(s)	139, 896
SexAI	ACCWGGT	1 cut(s)	1107
SfaNI	GCATC	6 cut(s)	389, 857, 868, 1100, 1266, 1292
SfcI	CTRYAG	1 cut(s)	1253
SmiMI	CAYNNNNRTG	4 cut(s)	330, 600, 740, 1101
SmlI	CTYRAG	2 cut(s)	10, 174
SmoI	CTYRAG	2 cut(s)	10, 174
SpeI	ACTAGT	1 cut(s)	463
SphI	GCATGC	3 cut(s)	485, 599, 1189
SsiI	CCGC	1 cut(s)	599
SspMI	CTAG	5 cut(s)	464, 575, 632, 942, 1116
SstI	GAGCTC	1 cut(s)	896
StyD4I	CCNGG	4 cut(s)	51, 208, 947, 1107
TaaI	ACNGT	2 cut(s)	201, 936
TaqI	TCGA	3 cut(s)	109, 356, 1268
TatI	WGTACW	3 cut(s)	100, 698, 931
TfiI	GAWTC	4 cut(s)	305, 311, 411, 1076
Tru1I	TTAA	3 cut(s)	231, 258, 986
Tru9I	TTAA	3 cut(s)	231, 258, 986
TscAI	CASTG	4 cut(s)	144, 206, 778, 979
TseFI	GTSAC	3 cut(s)	74, 186, 867
TseI	GCWGC	4 cut(s)	288, 768, 845, 1255
Tsp45I	GTSAC	3 cut(s)	74, 186, 867
TspDTI	ATGAA	7 cut(s)	17, 326, 456, 481, 489, 724, 1089
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	4 cut(s)	144, 206, 778, 979
Tth111I	GACNNNGTC	1 cut(s)	1109
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	3 cut(s)	151, 347, 1198
XceI	RCATGY	4 cut(s)	436, 485, 599, 1189
XspI	CTAG	5 cut(s)	464, 575, 632, 942, 1116
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.