Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002918

Physical Location & Seq

Genomic Coordinates Reverse (-)

28071747 .. 28074977

Gene Structure 3231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1189100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGGACGAGTCCGAGAAATTGACGGCGTTGAAGAAGGCGTACGCCGAGATAATCCTCAACACGGCGAAAGAGGCGGCGGCTCGAATTGTGGTGTCGGAGAGGAAAGCCCTGCGGTTCCAGAGGGAGCTCTTTTCGGCGAAAGACGAGGCCTTTCGGATGCTTCTTAGGCTCAAACAAATGTTGGATTCGAAGGCTGGCGAGGCAAAGATGATGTCCTTGAGTCAACAAGAAAAGATTGACGAACTCGAAGCGCAGCTGCAGGAAGCTGAGGATATAGTGAAGGAGCTTAGGGAAGAGTTGAGTGAAGTGCAAGCTCAACTGGAGAAGGCGAGAAGCAATCCAAGACAGCTGGATGGGCAAAATTTAGAGGGTGATACTGCTCCTCAAGTGTCAATAACATCGCAGTTGAATTTGCAGCTAGATGCAGTTGCGGCTCATGAAACGAATCCAATTTCAAATGGGACATATGAGAGGAAAGGGTGTTACAGTGGAAATGATTCTCTTAAGGATAATTACTATGTTCAAAATCCTGATTTCGCCTCGTTAGTAATGAGAAGTAAAGATCCTGAGTTATACAGAAATGGATGCACTCAGAGAATTCGTGCATTTGAAAGAAACCTGTTGGATGAAAAATTGTCTCTTTCTGGACTTGTTGATAATGGGAAGAATGTAACACTCATCAGAGGAGATGATGAACAACTGTGTAAAACCCCTAAAATAAACGGTGATAATACGAATGGGGTAGAGGAGAACCCGGAAGAGCTGAAAGTGATGCAGGCAGATGGTAGCCATATTCAAGCACCTGCCTTTATGTCCTTTCAGAAGAAGAGAAAGAGAGCAGCTAGATTTAGGAGAAGTGAAGCTCCCTCATGCAGGTATCTTGATCCTCATCAGTTGATGGAAATGCGCCAAGTATCTAATTTATCATGCCCTAGAACTTCTGCTTCTTCCCTCAATAACAGTGTTCTCGCAGATAATGCTTCCAAGAAGTCCGAAGATGAAAATCAAAAAGTCACATCATCCATTTCAACCTCAAAAATACTCCCGGATAAAACTGAAACGAGTACACAGTCGGAATGTGGTAATGTTACTGAAAATGATAGTGTTCAGAAGGCAACGAGTAATGACAAGACGTTTATTGAAGAATCCAGATTGACCGGACAGGAGTGTATATCTGCTGAGAGCTTGAAGGTTCTGGCATGCAAAGCAGATGTTGAAAAAGATTATCCATTAGATAAGTCAGATACGAAAGTATCCGATTTAGATGATGGCACCGCTAGTCAACCTGAAAACAATAAGTTTCTCAAATATACTTTCTGCAGAAAGCGCAAGAAGGACACGTTGAGCAACCCTGAAAGCAAGTCTCTTCTTGACAATGGCACTTTGGAAAGGAACACAGGCGAGGAACAAAATGGTTCTATAGAGCCACAGAAATCGAGCTTGTTGATTGAATCATCCCGGGAAAGTCGACGACTAGCACAGGTTGCTCGTCAGCTTATATCTTTGTCGGAGAAGAAGTGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

509

Amino Acids

57.04

Weight (kDa)

5.63

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19010 AT1G19010 AT1G74860
fragaria_vesca	FvH4_5g16190 FvH4_5g16190 FvH4_6g49700 FvH4_6g49700
malus_domestica	MD06G1183100.v1.1 MD09G1042200.v1.1 MD14G1189100.v1.1 MD17G1043600.v1.1
prunus_persica	Prupe.3G275400_v2.0.a1 Prupe.3G275500_v2.0.a1 Prupe.5G181500_v2.0.a1 Prupe.5G181800_v2.0.a1
pyrus_communis	pycom06g16210 pycom111g03310 pycom14g15680 pycom17g03890
rosa_chinensis	RchiOBHm_Chr2g0169731 RchiOBHm_Chr7g0179941
rosa_laevigata	RLG00000005308 RLG00000021897
rosa_multiflora	Rmu_ssc0000247.1_g000001 Rmu_ssc0000389.1_g000031
rosa_roxburghii	Rroxscaffold_2G00081840 Rroxscaffold_3G00273290
rosa_rugosa	Rorug02G0542500 Rorug06G0429300
rosa_samantha	Rh2BG627000 Rh2CG596500 Rh2DG637900 Rh7AG029800 Rh7BG029000 Rh7CG030600 Rh7DG030000
rosa_wichuraiana	Rw2G050970 Rw7G002380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	811
Acc36I	ACCTGC	2 cut(s)	811, 864
AccB1I	GGYRCC	1 cut(s)	1271
AccI	GTMKAC	1 cut(s)	1468
AciI	CCGC	6 cut(s)	74, 77, 112, 431, 1275, 1522
AclWI	GGATC	2 cut(s)	557, 878
AcsI	RAATTY	3 cut(s)	361, 409, 597
AfaI	GTAC	2 cut(s)	41, 1066
AfiI	CCNNNNNNNGG	2 cut(s)	61, 873
AflII	CTTAAG	1 cut(s)	503
AflIII	ACRYGT	1 cut(s)	1338
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	2 cut(s)	642, 1368
AlwI	GGATC	2 cut(s)	557, 878
Ama87I	CYCGRG	1 cut(s)	1458
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	4 cut(s)	253, 256, 415, 839
ApoI	RAATTY	3 cut(s)	361, 409, 597
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
Asp700I	GAANNNNTTC	1 cut(s)	496
AspLEI	GCGC	3 cut(s)	253, 909, 1329
AsuC2I	CCSGG	4 cut(s)	755, 1046, 1459, 1460
AsuHPI	GGTGA	2 cut(s)	383, 737
AsuII	TTCGAA	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	1458
BaeI	ACNNNNGTAYC	4 cut(s)	1236, 1236, 1269, 1269
BanI	GGYRCC	1 cut(s)	1271
BanII	GRGCYC	1 cut(s)	129
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
Bbv12I	GWGCWC	1 cut(s)	129
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	4 cut(s)	243, 265, 427, 851
BccI	CCATC	4 cut(s)	347, 776, 892, 1262
BceAI	ACGGC	2 cut(s)	39, 78
BciVI	GTATCC	1 cut(s)	1264
BcnI	CCSGG	4 cut(s)	755, 1046, 1459, 1460
BcoDI	GTCTC	2 cut(s)	642, 1368
BfaI	CTAG	5 cut(s)	419, 843, 933, 1278, 1475
BfmI	CTRYAG	3 cut(s)	257, 1318, 1419
BfrI	CTTAAG	1 cut(s)	503
BfuAI	ACCTGC	2 cut(s)	811, 864
BfuI	GTATCC	1 cut(s)	1264
BisI	GCNGC	7 cut(s)	75, 78, 254, 257, 416, 432, 840
BlsI	GCNGC	7 cut(s)	76, 79, 255, 258, 417, 433, 841
Bme1390I	CCNGG	4 cut(s)	755, 1046, 1459, 1460
BmeT110I	CYCGRG	1 cut(s)	1458
BmiI	GGNNCC	2 cut(s)	116, 1273
BmrFI	CCNGG	4 cut(s)	755, 1046, 1459, 1460
BmsI	GCATC	4 cut(s)	147, 412, 575, 762
BpmI	CTGGAG	1 cut(s)	341
Bpu10I	CCTNAGC	2 cut(s)	267, 287
Bpu14I	TTCGAA	1 cut(s)	188
BpuEI	CTTGAG	2 cut(s)	238, 369
BpuMI	CCSGG	4 cut(s)	755, 1046, 1459, 1460
BsaBI	GATNNNNATC	2 cut(s)	888, 1002
BsaJI	CCNNGG	1 cut(s)	1458
BsaWI	WCCGGW	1 cut(s)	1157
BsaXI	ACNNNNNCTCC	1 cut(s)	1502
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 873
Bse1I	ACTGG	1 cut(s)	324
Bse8I	GATNNNNATC	2 cut(s)	888, 1002
BseDI	CCNNGG	1 cut(s)	1458
BseGI	GGATG	6 cut(s)	162, 358, 590, 631, 1019, 1454
BseJI	GATNNNNATC	2 cut(s)	888, 1002
BseLI	CCNNNNNNNGG	2 cut(s)	61, 873
BseMII	CTCAG	4 cut(s)	258, 558, 605, 1170
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	3 cut(s)	372, 699, 761
BseXI	GCAGC	4 cut(s)	243, 265, 427, 851
BshFI	GGCC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	1271
BsiHKAI	GWGCWC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	1458
BsiSI	CCGG	4 cut(s)	755, 1046, 1158, 1459
BsiWI	CGTACG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	2 cut(s)	61, 873
BsmAI	GTCTC	2 cut(s)	642, 1368
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	1458
Bsp119I	TTCGAA	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	2 cut(s)	562, 883
BspACI	CCGC	6 cut(s)	74, 77, 112, 431, 1275, 1522
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	4 cut(s)	259, 559, 604, 1171
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	116, 1273
BspMAI	CTGCAG	2 cut(s)	261, 1322
BspMI	ACCTGC	2 cut(s)	811, 864
BspPI	GGATC	2 cut(s)	557, 878
BspQI	GCTCTTC	1 cut(s)	753
BspT104I	TTCGAA	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	1271
BspTI	CTTAAG	1 cut(s)	503
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	1458
BssMI	GATC	2 cut(s)	562, 883
Bst4CI	ACNGT	5 cut(s)	488, 702, 725, 962, 1071
Bst6I	CTCTTC	4 cut(s)	288, 753, 821, 1371
BstAFI	CTTAAG	1 cut(s)	503
BstAPI	GCANNNNNTGC	2 cut(s)	977, 1484
BstBI	TTCGAA	1 cut(s)	188
BstC8I	GCNNGC	4 cut(s)	196, 312, 777, 1201
BstDEI	CTNAG	6 cut(s)	164, 267, 287, 567, 591, 1179
BstENI	CCTNNNNNAGG	1 cut(s)	871
BstF5I	GGATG	6 cut(s)	162, 358, 590, 631, 1019, 1454
BstHHI	GCGC	3 cut(s)	253, 909, 1329
BstKTI	GATC	2 cut(s)	565, 886
BstMAI	GTCTC	2 cut(s)	642, 1368
BstMBI	GATC	2 cut(s)	562, 883
BstMWI	GCNNNNNNNGC	9 cut(s)	71, 166, 200, 355, 431, 977, 1205, 1326, 1484
BstNSI	RCATGY	1 cut(s)	1203
BstSCI	CCNGG	4 cut(s)	753, 1044, 1457, 1458
BstSFI	CTRYAG	3 cut(s)	257, 1318, 1419
BstV1I	GCAGC	4 cut(s)	243, 265, 427, 851
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BsuI	GTATCC	1 cut(s)	1264
BsuRI	GGCC	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	384
BtsCI	GGATG	6 cut(s)	162, 358, 590, 631, 1019, 1454
BtsIMutI	CAGTG	2 cut(s)	493, 967
BveI	ACCTGC	2 cut(s)	811, 864
Cac8I	GCNNGC	4 cut(s)	196, 312, 777, 1201
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	3 cut(s)	253, 909, 1329
Cfr9I	CCCGGG	1 cut(s)	1458
Csp6I	GTAC	2 cut(s)	40, 1065
CviAII	CATG	4 cut(s)	437, 870, 927, 1200
CviQI	GTAC	2 cut(s)	40, 1065
DdeI	CTNAG	6 cut(s)	164, 267, 287, 567, 591, 1179
DpnI	GATC	2 cut(s)	564, 885
DpnII	GATC	2 cut(s)	562, 883
Eam1104I	CTCTTC	4 cut(s)	288, 753, 821, 1371
EarI	CTCTTC	4 cut(s)	288, 753, 821, 1371
Ecl136II	GAGCTC	1 cut(s)	127
Eco147I	AGGCCT	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	1458
EcoICRI	GAGCTC	1 cut(s)	127
EcoNI	CCTNNNNNAGG	1 cut(s)	871
EcoRI	GAATTC	1 cut(s)	597
EcoT38I	GRGCYC	1 cut(s)	129
FaeI	CATG	4 cut(s)	440, 873, 930, 1203
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	4 cut(s)	436, 869, 926, 1199
FauNDI	CATATG	1 cut(s)	466
FblI	GTMKAC	1 cut(s)	1468
Fnu4HI	GCNGC	7 cut(s)	75, 78, 254, 257, 416, 432, 840
FokI	GGATG	6 cut(s)	169, 365, 597, 638, 1006, 1441
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	7 cut(s)	75, 78, 254, 257, 416, 432, 840
FspBI	CTAG	5 cut(s)	419, 843, 933, 1278, 1475
GlaI	GCGC	3 cut(s)	252, 908, 1328
GluI	GCNGC	7 cut(s)	75, 78, 254, 257, 416, 432, 840
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	4 cut(s)	755, 1046, 1158, 1459
HhaI	GCGC	3 cut(s)	253, 909, 1329
Hin1II	CATG	4 cut(s)	440, 873, 930, 1203
Hin6I	GCGC	3 cut(s)	251, 907, 1327
HinP1I	GCGC	3 cut(s)	251, 907, 1327
HincII	GTYRAC	3 cut(s)	224, 1283, 1469
HindII	GTYRAC	3 cut(s)	224, 1283, 1469
HinfI	GANTC	7 cut(s)	8, 185, 220, 445, 497, 1145, 1451
HpaII	CCGG	4 cut(s)	755, 1046, 1158, 1459
HphI	GGTGA	2 cut(s)	383, 737
Hpy166II	GTNNAC	4 cut(s)	224, 1067, 1283, 1469
Hpy188III	TCNNGA	8 cut(s)	118, 437, 530, 566, 645, 881, 1149, 1370
Hpy8I	GTNNAC	4 cut(s)	224, 1067, 1283, 1469
Hpy99I	CGWCG	1 cut(s)	1473
HpyAV	CCTTC	7 cut(s)	28, 184, 274, 319, 1105, 1183, 1327
HpyCH4III	ACNGT	5 cut(s)	488, 702, 725, 962, 1071
HpyCH4IV	ACGT	2 cut(s)	1133, 1340
HpyF10VI	GCNNNNNNNGC	9 cut(s)	71, 166, 200, 355, 431, 977, 1205, 1326, 1484
HpyF3I	CTNAG	6 cut(s)	164, 267, 287, 567, 591, 1179
HpySE526I	ACGT	2 cut(s)	1133, 1340
Hsp92II	CATG	4 cut(s)	440, 873, 930, 1203
HspAI	GCGC	3 cut(s)	251, 907, 1327
Kzo9I	GATC	2 cut(s)	562, 883
LguI	GCTCTTC	1 cut(s)	753
LmnI	GCTCC	4 cut(s)	124, 283, 385, 868
Lsp1109I	GCAGC	4 cut(s)	243, 265, 427, 851
LweI	GCATC	4 cut(s)	147, 412, 575, 762
MaeI	CTAG	5 cut(s)	419, 843, 933, 1278, 1475
MaeII	ACGT	2 cut(s)	1133, 1340
MaeIII	GTNAC	4 cut(s)	482, 670, 1012, 1087
MalI	GATC	2 cut(s)	564, 885
MboI	GATC	2 cut(s)	562, 883
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	9 cut(s)	17, 84, 361, 409, 450, 511, 597, 632, 919
MlyI	GAGTC	2 cut(s)	17, 229
MmeI	TCCRAC	5 cut(s)	75, 162, 603, 1053, 1488
MroXI	GAANNNNTTC	1 cut(s)	496
MseI	TTAA	1 cut(s)	504
MspA1I	CMGCKG	2 cut(s)	256, 349
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	4 cut(s)	755, 1046, 1158, 1459
MspR9I	CCNGG	4 cut(s)	755, 1046, 1459, 1460
MwoI	GCNNNNNNNGC	9 cut(s)	71, 166, 200, 355, 431, 977, 1205, 1326, 1484
NciI	CCSGG	4 cut(s)	755, 1046, 1459, 1460
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	2 cut(s)	562, 883
NlaIII	CATG	4 cut(s)	440, 873, 930, 1203
NlaIV	GGNNCC	2 cut(s)	116, 1273
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	1012
NspI	RCATGY	1 cut(s)	1203
NspV	TTCGAA	1 cut(s)	188
PaeI	GCATGC	1 cut(s)	1203
PagI	TCATGA	1 cut(s)	436
PaqCI	CACCTGC	1 cut(s)	811
PceI	AGGCCT	1 cut(s)	149
PciSI	GCTCTTC	1 cut(s)	753
PdmI	GAANNNNTTC	1 cut(s)	496
PfeI	GAWTC	5 cut(s)	185, 445, 497, 1145, 1451
Pfl23II	CGTACG	1 cut(s)	39
PfoI	TCCNGGA	1 cut(s)	1044
PkrI	GCNGC	7 cut(s)	76, 79, 255, 258, 417, 433, 841
PleI	GAGTC	2 cut(s)	16, 228
PpsI	GAGTC	2 cut(s)	16, 228
Psp124BI	GAGCTC	1 cut(s)	129
PspLI	CGTACG	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	116, 1273
PstI	CTGCAG	2 cut(s)	261, 1322
PsuI	RGATCY	1 cut(s)	562
PvuII	CAGCTG	2 cut(s)	256, 349
RsaI	GTAC	2 cut(s)	41, 1066
RsaNI	GTAC	2 cut(s)	40, 1065
SacI	GAGCTC	1 cut(s)	129
SalI	GTCGAC	1 cut(s)	1467
SapI	GCTCTTC	1 cut(s)	753
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	7 cut(s)	75, 78, 254, 257, 416, 432, 840
Sau3AI	GATC	2 cut(s)	562, 883
SchI	GAGTC	2 cut(s)	17, 229
ScrFI	CCNGG	4 cut(s)	755, 1046, 1459, 1460
SduI	GDGCHC	1 cut(s)	129
SfaNI	GCATC	4 cut(s)	147, 412, 575, 762
SfcI	CTRYAG	3 cut(s)	257, 1318, 1419
SfuI	TTCGAA	1 cut(s)	188
SmaI	CCCGGG	1 cut(s)	1460
SmlI	CTYRAG	3 cut(s)	217, 384, 503
SmoI	CTYRAG	3 cut(s)	217, 384, 503
SphI	GCATGC	1 cut(s)	1203
Sse9I	AATT	9 cut(s)	17, 84, 361, 409, 450, 511, 597, 632, 919
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	6 cut(s)	74, 77, 112, 431, 1275, 1522
SspMI	CTAG	5 cut(s)	419, 843, 933, 1278, 1475
SstI	GAGCTC	1 cut(s)	129
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	4 cut(s)	753, 1044, 1457, 1458
TaaI	ACNGT	5 cut(s)	488, 702, 725, 962, 1071
TaiI	ACGT	2 cut(s)	1136, 1343
TaqI	TCGA	5 cut(s)	82, 188, 246, 1436, 1468
TasI	AATT	9 cut(s)	17, 84, 361, 409, 450, 511, 597, 632, 919
TatI	WGTACW	1 cut(s)	1064
TauI	GCSGC	3 cut(s)	77, 80, 434
TfiI	GAWTC	5 cut(s)	185, 445, 497, 1145, 1451
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	2 cut(s)	493, 967
TseFI	GTSAC	1 cut(s)	1012
TseI	GCWGC	4 cut(s)	253, 256, 415, 839
Tsp45I	GTSAC	1 cut(s)	1012
TspDTI	ATGAA	4 cut(s)	453, 642, 708, 1014
TspMI	CCCGGG	1 cut(s)	1458
TspRI	CASTG	2 cut(s)	493, 967
Vha464I	CTTAAG	1 cut(s)	503
XagI	CCTNNNNNAGG	1 cut(s)	871
XapI	RAATTY	3 cut(s)	361, 409, 597
XceI	RCATGY	1 cut(s)	1203
XmaI	CCCGGG	1 cut(s)	1458
XmiI	GTMKAC	1 cut(s)	1468
XmnI	GAANNNNTTC	1 cut(s)	496
XspI	CTAG	5 cut(s)	419, 843, 933, 1278, 1475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.