Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002388

Physical Location & Seq

Genomic Coordinates Reverse (-)

8028158 .. 8030136

Gene Structure 1979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTTCGAATCGAACATGGTTCTTCAAACACTATCTTCTTCTTCTCCTCCAATTCACCGTCTCTATCTTCACCATTCTCAGATTCTCCCTTCTTCTGGGTCACCCAGCAAGATTTCTCTTCAGATACATGGAAGGACTTTGGCCATTCGATCTTTTCATGATTATGTCTTTGCAGAAATTTCTGCTAGAGGTTTACCGGCTTTGAACAAAGCTTCCTTGAAGAAGCTACCAATCAAAGGATCTACCTTTCTGCTGGGGCAGAGCTTGTTGATGGTTTCTGCTCACCCACAGTTGGCAGCAGCAGCAGAAATCATAAAGCCTGAACCGATTTACGAAGTTGGAGAGTTATTTGAACTTAGTATTCAGCTTTCTTACTTGCTGTTACTACTGGGGTTGCTTGGAGTTGGTACTTTCTATGTGATCCGTCAAGTACTTGTACGCAGAGAACTAGACCTCTCCGCTAAAGAATTGCAGGAGCAAGTAAGGAGCGGAGATGCAAGTGCAACAGAGCTCTTTGAGCTTGGTGCAGTGATGTTGAGAAGGAAGTTTTATCCTGCAGCCAACAAGTTTTTGCAACAAGCTATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAGGTCTATAACGCTCTTGGAGTGAGTTATGTACGAGAGGATAAACTTGACAAAGGAATTGCTCAGTTTGAAATGGCGGTGAAGCTGCAACCCGGTTATGTAACAGCTTGGAACAACCTTGGGGATGCTTATGAGAAGAAGAAGGAGTTGCCTTTGGCATTGAATGCGTTTGAAGAAGTTTTGTTGTTTGATCCAAACAATAAGGTGGCTCGGCCTCGGCGAGATGCGTTGAAGGATCGCGTGAAGCTTTATAAAGGTGTTGTGGCTGTTAAGTCTAAGAAACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_2 TPR_8

Protein Analysis

301

Amino Acids

33.66

Weight (kDa)

9.41

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_16	PF13432	206 - 262	9.8e-07	Tetratricopeptide repeat
TPR_2	PF07719	236 - 268	4.8e-06	Tetratricopeptide repeat
TPR_1	PF00515	237 - 268	4.2e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22700 AT1G22700 AT1G22700
fragaria_vesca	FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740
malus_domestica	MD12G1013600.v1.1 MD14G1011000.v1.1
prunus_persica	Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1
pyrus_communis	pycom12g01090 pycom14g00950 pycom14g00980
rosa_chinensis	RchiOBHm_Chr2g0092511 RchiOBHm_Chr3g0495761 RchiOBHm_Chr7g0199541 RchiOBHm_Chr7g0219671
rosa_laevigata	RLG00000022588
rosa_multiflora	Rmu_sc0025082.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308790 Rroxscaffold_6G00390030 Rroxscaffold_6G00405380
rosa_rugosa	Rorug03G0276400
rosa_samantha	Rh3AG323600 Rh3BG359400 Rh3CG355800 Rh3DG359000 Rh7AG179900 Rh7AG300200 Rh7CG188900 Rh7CG348000 Rh7DG182600 Rh7DG326100
rosa_wichuraiana	Rw3G028290 Rw7G015800 Rw7G027840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	870
AccBSI	CCGCTC	1 cut(s)	489
AccII	CGCG	1 cut(s)	858
AciI	CCGC	3 cut(s)	459, 489, 695
AclWI	GGATC	4 cut(s)	247, 415, 803, 861
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	4 cut(s)	409, 432, 438, 651
AfiI	CCNNNNNNNGG	4 cut(s)	95, 236, 292, 592
AgsI	TTSAA	8 cut(s)	26, 205, 220, 353, 689, 781, 791, 850
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	4 cut(s)	247, 415, 803, 861
AoxI	GGCC	2 cut(s)	141, 830
ApeKI	GCWGC	5 cut(s)	296, 299, 302, 557, 703
ApoI	RAATTY	1 cut(s)	177
AsuC2I	CCSGG	1 cut(s)	711
AsuHPI	GGTGA	6 cut(s)	47, 62, 93, 275, 611, 709
AsuII	TTCGAA	1 cut(s)	6
BalI	TGGCCA	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	5 cut(s)	308, 311, 314, 569, 690
BccI	CCATC	1 cut(s)	265
BclI	TGATCA	1 cut(s)	604
BcnI	CCSGG	1 cut(s)	711
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	2 cut(s)	186, 449
BfmI	CTRYAG	1 cut(s)	555
BglII	AGATCT	1 cut(s)	610
BisI	GCNGC	5 cut(s)	297, 300, 303, 558, 704
BlsI	GCNGC	5 cut(s)	298, 301, 304, 559, 705
BmcAI	AGTACT	1 cut(s)	432
Bme1390I	CCNGG	1 cut(s)	711
BmrFI	CCNGG	1 cut(s)	711
BmrI	ACTGGG	1 cut(s)	398
BmsI	GCATC	3 cut(s)	484, 733, 832
BmuI	ACTGGG	1 cut(s)	398
Bpu10I	CCTNAGC	1 cut(s)	618
Bpu14I	TTCGAA	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	711
BsaBI	GATNNNNATC	1 cut(s)	609
BsaJI	CCNNGG	2 cut(s)	736, 833
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 236, 292, 592
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	393
Bse8I	GATNNNNATC	1 cut(s)	609
BseDI	CCNNGG	2 cut(s)	736, 833
BseGI	GGATG	1 cut(s)	748
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	4 cut(s)	95, 236, 292, 592
BseMII	CTCAG	3 cut(s)	92, 632, 695
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	5 cut(s)	308, 311, 314, 569, 690
BseYI	CCCAGC	2 cut(s)	104, 253
BsgI	GTGCAG	1 cut(s)	546
Bsh1236I	CGCG	1 cut(s)	858
BshFI	GGCC	2 cut(s)	143, 832
BsiHKAI	GWGCWC	1 cut(s)	513
BsiSI	CCGG	2 cut(s)	197, 711
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	4 cut(s)	95, 236, 292, 592
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	608
BsmI	GAATGC	1 cut(s)	787
BsnI	GGCC	2 cut(s)	143, 832
Bsp119I	TTCGAA	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	7 cut(s)	149, 239, 420, 604, 610, 808, 853
BspACI	CCGC	3 cut(s)	459, 489, 695
BspANI	GGCC	2 cut(s)	143, 832
BspCNI	CTCAG	3 cut(s)	91, 631, 694
BspFNI	CGCG	1 cut(s)	858
BspHI	TCATGA	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	559
BspPI	GGATC	4 cut(s)	247, 415, 803, 861
BspT104I	TTCGAA	1 cut(s)	6
BsrBI	CCGCTC	1 cut(s)	489
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	393
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	736, 833
BssMI	GATC	7 cut(s)	149, 239, 420, 604, 610, 808, 853
BssT1I	CCWWGG	1 cut(s)	736
Bst4CI	ACNGT	4 cut(s)	59, 291, 599, 903
Bst6I	CTCTTC	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstBI	TTCGAA	1 cut(s)	6
BstDEI	CTNAG	5 cut(s)	78, 356, 618, 681, 894
BstEII	GGTNACC	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	748
BstFNI	CGCG	1 cut(s)	858
BstKTI	GATC	7 cut(s)	152, 242, 423, 607, 613, 811, 856
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	7 cut(s)	149, 239, 420, 604, 610, 808, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	302, 517, 782
BstPI	GGTNACC	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	709
BstSFI	CTRYAG	1 cut(s)	555
BstUI	CGCG	1 cut(s)	858
BstV1I	GCAGC	5 cut(s)	308, 311, 314, 569, 690
BstX2I	RGATCY	2 cut(s)	239, 610
BstYI	RGATCY	2 cut(s)	239, 610
BsuRI	GGCC	2 cut(s)	143, 832
BtsCI	GGATG	1 cut(s)	748
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	534
CciI	TCATGA	1 cut(s)	157
Cfr10I	RCCGGY	1 cut(s)	196
Csp6I	GTAC	4 cut(s)	408, 431, 437, 650
CviAII	CATG	3 cut(s)	16, 128, 158
CviQI	GTAC	4 cut(s)	408, 431, 437, 650
DdeI	CTNAG	5 cut(s)	78, 356, 618, 681, 894
DpnI	GATC	7 cut(s)	151, 241, 422, 606, 612, 810, 855
DpnII	GATC	7 cut(s)	149, 239, 420, 604, 610, 808, 853
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	736
Eco24I	GRGCYC	1 cut(s)	513
Eco53kI	GAGCTC	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	104
Eco91I	GGTNACC	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	511
EcoO65I	GGTNACC	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	736
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	736
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	3 cut(s)	19, 131, 161
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	3 cut(s)	15, 127, 157
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	5 cut(s)	297, 300, 303, 558, 704
FokI	GGATG	1 cut(s)	755
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	5 cut(s)	297, 300, 303, 558, 704
FspBI	CTAG	2 cut(s)	186, 449
GluI	GCNGC	5 cut(s)	297, 300, 303, 558, 704
GsaI	CCCAGC	2 cut(s)	108, 257
HaeIII	GGCC	2 cut(s)	143, 832
HapII	CCGG	2 cut(s)	197, 711
Hin1II	CATG	3 cut(s)	19, 131, 161
HindIII	AAGCTT	2 cut(s)	210, 863
HinfI	GANTC	2 cut(s)	8, 82
HpaII	CCGG	2 cut(s)	197, 711
HphI	GGTGA	6 cut(s)	47, 62, 93, 275, 611, 709
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	2 cut(s)	81, 123
Hpy188III	TCNNGA	3 cut(s)	158, 586, 608
Hpy8I	GTNNAC	1 cut(s)	194
HpyAV	CCTTC	5 cut(s)	99, 126, 534, 754, 844
HpyCH4III	ACNGT	4 cut(s)	59, 291, 599, 903
HpyCH4V	TGCA	8 cut(s)	173, 472, 497, 503, 527, 557, 574, 706
HpyF10VI	GCNNNNNNNGC	3 cut(s)	302, 517, 782
HpyF3I	CTNAG	5 cut(s)	78, 356, 618, 681, 894
Hsp92II	CATG	3 cut(s)	19, 131, 161
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	7 cut(s)	149, 239, 420, 604, 610, 808, 853
LmnI	GCTCC	2 cut(s)	475, 486
Lsp1109I	GCAGC	5 cut(s)	308, 311, 314, 569, 690
LweI	GCATC	3 cut(s)	484, 733, 832
MaeI	CTAG	2 cut(s)	186, 449
MaeIII	GTNAC	3 cut(s)	99, 381, 718
MalI	GATC	7 cut(s)	151, 241, 422, 606, 612, 810, 855
MbiI	CCGCTC	1 cut(s)	489
MboI	GATC	7 cut(s)	149, 239, 420, 604, 610, 808, 853
MflI	RGATCY	2 cut(s)	239, 610
MhlI	GDGCHC	1 cut(s)	513
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	4 cut(s)	51, 177, 467, 675
MluNI	TGGCCA	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	5 cut(s)	57, 182, 464, 649, 843
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	1 cut(s)	888
MslI	CAYNNNNRTG	1 cut(s)	162
Msp20I	TGGCCA	1 cut(s)	143
MspI	CCGG	2 cut(s)	197, 711
MspR9I	CCNGG	1 cut(s)	711
Mva1269I	GAATGC	1 cut(s)	787
MvnI	CGCG	1 cut(s)	858
MwoI	GCNNNNNNNGC	3 cut(s)	302, 517, 782
NciI	CCSGG	1 cut(s)	711
NdeII	GATC	7 cut(s)	149, 239, 420, 604, 610, 808, 853
NlaIII	CATG	3 cut(s)	19, 131, 161
NmeAIII	GCCGAG	2 cut(s)	808, 814
NmuCI	GTSAC	1 cut(s)	99
NspV	TTCGAA	1 cut(s)	6
PagI	TCATGA	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	835
PctI	GAATGC	1 cut(s)	787
PfeI	GAWTC	2 cut(s)	8, 82
PkrI	GCNGC	5 cut(s)	298, 301, 304, 559, 705
PsiI	TTATAA	1 cut(s)	870
Psp124BI	GAGCTC	1 cut(s)	513
PspEI	GGTNACC	1 cut(s)	99
PspFI	CCCAGC	2 cut(s)	104, 253
PstI	CTGCAG	1 cut(s)	559
PsuI	RGATCY	2 cut(s)	239, 610
RsaI	GTAC	4 cut(s)	409, 432, 438, 651
RsaNI	GTAC	4 cut(s)	408, 431, 437, 650
RseI	CAYNNNNRTG	1 cut(s)	162
SacI	GAGCTC	1 cut(s)	513
SaqAI	TTAA	1 cut(s)	888
SatI	GCNGC	5 cut(s)	297, 300, 303, 558, 704
Sau3AI	GATC	7 cut(s)	149, 239, 420, 604, 610, 808, 853
ScaI	AGTACT	1 cut(s)	432
ScrFI	CCNGG	1 cut(s)	711
SduI	GDGCHC	1 cut(s)	513
SfaNI	GCATC	3 cut(s)	484, 733, 832
SfcI	CTRYAG	1 cut(s)	555
SfuI	TTCGAA	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse9I	AATT	4 cut(s)	51, 177, 467, 675
SsiI	CCGC	3 cut(s)	459, 489, 695
SspMI	CTAG	2 cut(s)	186, 449
SstI	GAGCTC	1 cut(s)	513
StyD4I	CCNGG	1 cut(s)	709
StyI	CCWWGG	1 cut(s)	736
TaaI	ACNGT	4 cut(s)	59, 291, 599, 903
TaqI	TCGA	3 cut(s)	6, 11, 148
TasI	AATT	4 cut(s)	51, 177, 467, 675
TatI	WGTACW	1 cut(s)	430
TfiI	GAWTC	2 cut(s)	8, 82
Tru1I	TTAA	1 cut(s)	888
Tru9I	TTAA	1 cut(s)	888
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	5 cut(s)	296, 299, 302, 557, 703
Tsp45I	GTSAC	1 cut(s)	99
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	1 cut(s)	534
XapI	RAATTY	1 cut(s)	177
XspI	CTAG	2 cut(s)	186, 449
ZrmI	AGTACT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.