Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G22700 AT1G22700 AT1G22700 |
| fragaria_vesca | FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 |
| malus_domestica | MD12G1013600.v1.1 MD14G1011000.v1.1 |
| prunus_persica | Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 |
| pyrus_communis | pycom12g01090 pycom14g00950 pycom14g00980 |
| rosa_chinensis | RchiOBHm_Chr2g0092511 RchiOBHm_Chr3g0495761 RchiOBHm_Chr7g0199541 RchiOBHm_Chr7g0219671 |
| rosa_laevigata | RLG00000022588 |
| rosa_multiflora | Rmu_sc0025082.1_g000004 |
| rosa_roxburghii | Rroxscaffold_4G00308790 Rroxscaffold_6G00390030 Rroxscaffold_6G00405380 |
| rosa_rugosa | Rorug03G0276400 |
| rosa_samantha | Rh3AG323600 Rh3BG359400 Rh3CG355800 Rh3DG359000 Rh7AG179900 Rh7AG300200 Rh7CG188900 Rh7CG348000 Rh7DG182600 Rh7DG326100 |
| rosa_wichuraiana | Rw3G028290 Rw7G015800 Rw7G027840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 31 |
| AcsI | RAATTY | 1 cut(s) | 108 |
| AfaI | GTAC | 2 cut(s) | 131, 296 |
| AgsI | TTSAA | 3 cut(s) | 80, 218, 277 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 196 |
| AluBI | AGCT | 3 cut(s) | 14, 73, 119 |
| AluI | AGCT | 3 cut(s) | 14, 73, 119 |
| ApeKI | GCWGC | 1 cut(s) | 119 |
| ApoI | RAATTY | 1 cut(s) | 108 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 225 |
| AsuHPI | GGTGA | 1 cut(s) | 65 |
| BbvCI | CCTCAGC | 1 cut(s) | 98 |
| BbvI | GCAGC | 1 cut(s) | 106 |
| BccI | CCATC | 1 cut(s) | 152 |
| BceAI | ACGGC | 1 cut(s) | 278 |
| BfaI | CTAG | 2 cut(s) | 60, 116 |
| BfuAI | ACCTGC | 1 cut(s) | 31 |
| BglII | AGATCT | 1 cut(s) | 172 |
| BisI | GCNGC | 1 cut(s) | 120 |
| BlsI | GCNGC | 1 cut(s) | 121 |
| BmcAI | AGTACT | 1 cut(s) | 131 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 196 |
| BmsI | GCATC | 3 cut(s) | 46, 84, 259 |
| Bpu10I | CCTNAGC | 1 cut(s) | 98 |
| BpuEI | CTTGAG | 1 cut(s) | 56 |
| BsaJI | CCNNGG | 1 cut(s) | 260 |
| BseDI | CCNNGG | 1 cut(s) | 260 |
| BseGI | GGATG | 2 cut(s) | 163, 169 |
| BseMII | CTCAG | 2 cut(s) | 89, 194 |
| BseRI | GAGGAG | 1 cut(s) | 115 |
| BseXI | GCAGC | 1 cut(s) | 106 |
| BsmI | GAATGC | 1 cut(s) | 214 |
| Bsp1407I | TGTACA | 1 cut(s) | 294 |
| Bsp143I | GATC | 1 cut(s) | 172 |
| BspCNI | CTCAG | 2 cut(s) | 90, 193 |
| BspMI | ACCTGC | 1 cut(s) | 31 |
| BsrGI | TGTACA | 1 cut(s) | 294 |
| BssECI | CCNNGG | 1 cut(s) | 260 |
| BssMI | GATC | 1 cut(s) | 172 |
| BstAUI | TGTACA | 1 cut(s) | 294 |
| BstDEI | CTNAG | 3 cut(s) | 98, 126, 180 |
| BstDSI | CCRYGG | 1 cut(s) | 260 |
| BstF5I | GGATG | 2 cut(s) | 163, 169 |
| BstKTI | GATC | 1 cut(s) | 175 |
| BstMBI | GATC | 1 cut(s) | 172 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 11, 262 |
| BstV1I | GCAGC | 1 cut(s) | 106 |
| BstX2I | RGATCY | 1 cut(s) | 172 |
| BstYI | RGATCY | 1 cut(s) | 172 |
| BtgI | CCRYGG | 1 cut(s) | 260 |
| BtsCI | GGATG | 2 cut(s) | 163, 169 |
| BveI | ACCTGC | 1 cut(s) | 31 |
| Csp6I | GTAC | 2 cut(s) | 130, 295 |
| CviJI | RGCY | 4 cut(s) | 5, 14, 73, 119 |
| CviKI_1 | RGCY | 4 cut(s) | 5, 14, 73, 119 |
| CviQI | GTAC | 2 cut(s) | 130, 295 |
| DdeI | CTNAG | 3 cut(s) | 98, 126, 180 |
| DpnI | GATC | 1 cut(s) | 174 |
| DpnII | GATC | 1 cut(s) | 172 |
| DriI | GACNNNNNGTC | 1 cut(s) | 196 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 196 |
| EcoT22I | ATGCAT | 1 cut(s) | 214 |
| FaiI | YATR | 1 cut(s) | 299 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 176, 208, 210, 242, 213, 245 |
| Fnu4HI | GCNGC | 1 cut(s) | 120 |
| FokI | GGATG | 2 cut(s) | 170, 176 |
| Fsp4HI | GCNGC | 1 cut(s) | 120 |
| FspBI | CTAG | 2 cut(s) | 60, 116 |
| GluI | GCNGC | 1 cut(s) | 120 |
| HphI | GGTGA | 1 cut(s) | 65 |
| Hpy166II | GTNNAC | 1 cut(s) | 201 |
| Hpy188I | TCNGA | 1 cut(s) | 183 |
| Hpy8I | GTNNAC | 1 cut(s) | 201 |
| HpyAV | CCTTC | 1 cut(s) | 271 |
| HpyCH4V | TGCA | 2 cut(s) | 65, 212 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 11, 262 |
| HpyF3I | CTNAG | 3 cut(s) | 98, 126, 180 |
| Kzo9I | GATC | 1 cut(s) | 172 |
| LmnI | GCTCC | 2 cut(s) | 11, 70 |
| LpnPI | CCDG | 3 cut(s) | 26, 125, 218 |
| Lsp1109I | GCAGC | 1 cut(s) | 106 |
| LweI | GCATC | 3 cut(s) | 46, 84, 259 |
| MaeI | CTAG | 2 cut(s) | 60, 116 |
| MalI | GATC | 1 cut(s) | 174 |
| MboI | GATC | 1 cut(s) | 172 |
| MboII | GAAGA | 2 cut(s) | 196, 230 |
| MfeI | CAATTG | 2 cut(s) | 29, 144 |
| MflI | RGATCY | 1 cut(s) | 172 |
| MluCI | AATT | 4 cut(s) | 29, 108, 144, 290 |
| MnlI | CCTC | 2 cut(s) | 93, 317 |
| Mph1103I | ATGCAT | 1 cut(s) | 214 |
| MroXI | GAANNNNTTC | 1 cut(s) | 225 |
| MseI | TTAA | 2 cut(s) | 195, 312 |
| MunI | CAATTG | 2 cut(s) | 29, 144 |
| Mva1269I | GAATGC | 1 cut(s) | 214 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 11, 262 |
| NdeII | GATC | 1 cut(s) | 172 |
| NsiI | ATGCAT | 1 cut(s) | 214 |
| PctI | GAATGC | 1 cut(s) | 214 |
| PdmI | GAANNNNTTC | 1 cut(s) | 225 |
| PkrI | GCNGC | 1 cut(s) | 121 |
| PsuI | RGATCY | 1 cut(s) | 172 |
| RsaI | GTAC | 2 cut(s) | 131, 296 |
| RsaNI | GTAC | 2 cut(s) | 130, 295 |
| SaqAI | TTAA | 2 cut(s) | 195, 312 |
| SatI | GCNGC | 1 cut(s) | 120 |
| Sau3AI | GATC | 1 cut(s) | 172 |
| ScaI | AGTACT | 1 cut(s) | 131 |
| SetI | ASST | 4 cut(s) | 16, 45, 75, 121 |
| SfaNI | GCATC | 3 cut(s) | 46, 84, 259 |
| SmlI | CTYRAG | 1 cut(s) | 35 |
| SmoI | CTYRAG | 1 cut(s) | 35 |
| Sse9I | AATT | 4 cut(s) | 29, 108, 144, 290 |
| SspMI | CTAG | 2 cut(s) | 60, 116 |
| TasI | AATT | 4 cut(s) | 29, 108, 144, 290 |
| TatI | WGTACW | 2 cut(s) | 129, 294 |
| Tru1I | TTAA | 2 cut(s) | 195, 312 |
| Tru9I | TTAA | 2 cut(s) | 195, 312 |
| TseI | GCWGC | 1 cut(s) | 119 |
| TspGWI | ACGGA | 1 cut(s) | 83 |
| XapI | RAATTY | 1 cut(s) | 108 |
| XmnI | GAANNNNTTC | 1 cut(s) | 225 |
| XspI | CTAG | 2 cut(s) | 60, 116 |
| ZrmI | AGTACT | 1 cut(s) | 131 |
| Zsp2I | ATGCAT | 1 cut(s) | 214 |