Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025082.1

Orthogroup ID

OG0002388

Physical Location & Seq

Genomic Coordinates Reverse (-)

14823 .. 15932

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025082.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgctgaggagaaaactttatccagctgctactaagtacttagttcaggcaattaagaaatgggatggggatgaccaagatcttgctcaagtgaagcttggtgatgcctatgaacagaagaaagtctttaagtccgccctgaatgcatttgaagaagtgcttcttttttatcctaacaacaaagtggcgcaaccacggcgagatgctttgaaggatcttggtgatgcctatgaacagaagaaagtctttaagtccgccctgaatgcatttgaagaagtgcttcttttttatcctaacagcaaagtggtgcaaccacggcgagatgctttgaaggaacaagtgaaattgtacatagatgtcctcgttaaaacaaaggagagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_2 TPR_8

Protein Analysis

127

Amino Acids

14.81

Weight (kDa)

9.5

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22700 AT1G22700 AT1G22700
fragaria_vesca	FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740
malus_domestica	MD12G1013600.v1.1 MD14G1011000.v1.1
prunus_persica	Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1
pyrus_communis	pycom12g01090 pycom14g00950 pycom14g00980
rosa_chinensis	RchiOBHm_Chr2g0092511 RchiOBHm_Chr3g0495761 RchiOBHm_Chr7g0199541 RchiOBHm_Chr7g0219671
rosa_laevigata	RLG00000022588
rosa_multiflora	Rmu_sc0025082.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308790 Rroxscaffold_6G00390030 Rroxscaffold_6G00405380
rosa_rugosa	Rorug03G0276400
rosa_samantha	Rh3AG323600 Rh3BG359400 Rh3CG355800 Rh3DG359000 Rh7AG179900 Rh7AG300200 Rh7CG188900 Rh7CG348000 Rh7DG182600 Rh7DG326100
rosa_wichuraiana	Rw3G028290 Rw7G015800 Rw7G027840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	135, 255
AclWI	GGATC	1 cut(s)	222
AfaI	GTAC	2 cut(s)	38, 350
AgsI	TTSAA	4 cut(s)	152, 211, 272, 331
AluBI	AGCT	2 cut(s)	26, 97
AluI	AGCT	2 cut(s)	26, 97
AlwI	GGATC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	26
Asp700I	GAANNNNTTC	2 cut(s)	159, 279
AspLEI	GCGC	1 cut(s)	190
AsuHPI	GGTGA	2 cut(s)	113, 233
BbvCI	CCTCAGC	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	1 cut(s)	59
BceAI	ACGGC	2 cut(s)	212, 332
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
BmcAI	AGTACT	1 cut(s)	38
BmsI	GCATC	4 cut(s)	94, 193, 214, 313
Bpu10I	CCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	194, 314
BseDI	CCNNGG	2 cut(s)	194, 314
BseGI	GGATG	2 cut(s)	70, 76
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	13
BsmI	GAATGC	2 cut(s)	148, 268
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	79, 214
BspACI	CCGC	2 cut(s)	135, 255
BspPI	GGATC	1 cut(s)	222
BsrGI	TGTACA	1 cut(s)	348
BssECI	CCNNGG	2 cut(s)	194, 314
BssMI	GATC	2 cut(s)	79, 214
BstAUI	TGTACA	1 cut(s)	348
BstDEI	CTNAG	3 cut(s)	5, 33, 40
BstDSI	CCRYGG	2 cut(s)	194, 314
BstF5I	GGATG	2 cut(s)	70, 76
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	2 cut(s)	82, 217
BstMBI	GATC	2 cut(s)	79, 214
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 196, 263, 316
BstV1I	GCAGC	1 cut(s)	13
BstX2I	RGATCY	2 cut(s)	79, 214
BstYI	RGATCY	2 cut(s)	79, 214
BtgI	CCRYGG	2 cut(s)	194, 314
BtsCI	GGATG	2 cut(s)	70, 76
CfoI	GCGC	1 cut(s)	190
Csp6I	GTAC	2 cut(s)	37, 349
CviJI	RGCY	2 cut(s)	26, 97
CviKI_1	RGCY	2 cut(s)	26, 97
CviQI	GTAC	2 cut(s)	37, 349
DdeI	CTNAG	3 cut(s)	5, 33, 40
DpnI	GATC	2 cut(s)	81, 216
DpnII	GATC	2 cut(s)	79, 214
EciI	GGCGGA	2 cut(s)	124, 244
EcoT22I	ATGCAT	2 cut(s)	148, 268
FaiI	YATR	3 cut(s)	111, 231, 353
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	2 cut(s)	77, 83
Fsp4HI	GCNGC	1 cut(s)	27
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	27
HhaI	GCGC	1 cut(s)	190
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HindIII	AAGCTT	1 cut(s)	95
HphI	GGTGA	2 cut(s)	113, 233
HpyAV	CCTTC	2 cut(s)	205, 325
HpyCH4V	TGCA	3 cut(s)	146, 266, 310
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 196, 263, 316
HpyF3I	CTNAG	3 cut(s)	5, 33, 40
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	2 cut(s)	79, 214
LpnPI	CCDG	4 cut(s)	32, 36, 152, 272
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	4 cut(s)	94, 193, 214, 313
MalI	GATC	2 cut(s)	81, 216
MboI	GATC	2 cut(s)	79, 214
MboII	GAAGA	4 cut(s)	130, 164, 250, 284
MflI	RGATCY	2 cut(s)	79, 214
MluCI	AATT	2 cut(s)	51, 344
MnlI	CCTC	1 cut(s)	371
Mph1103I	ATGCAT	2 cut(s)	148, 268
MroXI	GAANNNNTTC	2 cut(s)	159, 279
MseI	TTAA	4 cut(s)	54, 129, 249, 366
MspA1I	CMGCKG	1 cut(s)	26
Mva1269I	GAATGC	2 cut(s)	148, 268
MwoI	GCNNNNNNNGC	4 cut(s)	143, 196, 263, 316
NdeII	GATC	2 cut(s)	79, 214
NsiI	ATGCAT	2 cut(s)	148, 268
PctI	GAATGC	2 cut(s)	148, 268
PdmI	GAANNNNTTC	2 cut(s)	159, 279
PkrI	GCNGC	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	79, 214
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	2 cut(s)	38, 350
RsaNI	GTAC	2 cut(s)	37, 349
SaqAI	TTAA	4 cut(s)	54, 129, 249, 366
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	2 cut(s)	79, 214
ScaI	AGTACT	1 cut(s)	38
SetI	ASST	2 cut(s)	28, 99
SfaNI	GCATC	4 cut(s)	94, 193, 214, 313
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	2 cut(s)	51, 344
SsiI	CCGC	2 cut(s)	135, 255
TasI	AATT	2 cut(s)	51, 344
TatI	WGTACW	2 cut(s)	36, 348
Tru1I	TTAA	4 cut(s)	54, 129, 249, 366
Tru9I	TTAA	4 cut(s)	54, 129, 249, 366
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	2 cut(s)	126, 246
XmnI	GAANNNNTTC	2 cut(s)	159, 279
ZrmI	AGTACT	1 cut(s)	38
Zsp2I	ATGCAT	2 cut(s)	148, 268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.