Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002388

Physical Location & Seq

Genomic Coordinates Reverse (-)

32906809 .. 32946125

Gene Structure 39317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG300200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAGATTCATATCTGTATAAGGTATGCTTGCAAGGAAAGACAAGATAGAAGGAAACTGTGTGGCCTTGCATCTCTGCGGCCCAATTTGCCTCCACCACTTAAGACGTTGGCCACATGGGCTAATGATAACTTGAAGGATGGGATCACCATCCACACAACCTTAGGCGAGGAATTATTTGGATATCCAAAAAAGGTTTACAATGCCCTTGGGGTCAGTTATGTCCGTGATGGGAAGCTTGCTAAGGGAATTACCATTTTTAAAACTACGGTGAAGCTTCATCCAGGCTATGTTACTGCTTGGAACAACCTTGGTGATGCCTATGAACATAAGAAAGACTTTAAGTCTGCTCTGAATGCATTTGAAGAAGTGCTTCTTTTTTATCCTAACAACAAAGTGACGCAACCACGGCGAGATGCTTTGAAGGAACAAGTTTACAATGCCCTTGGGGTCAGTTATGTCCGTGATGGGAAGCTTGCTAAGGGAATTACCATTTTTAAAACTACGGTGAAGCTTCATCCAGGCTATGTTACTGCTTGGAACAACCTTGGTGATGCCTATGAACATAAGAAAGACTTTAAGTCTGCTCTGAATGCATTTGAAGAAGTGCTTCTTTTTTATCCTAACAACAAAGTGACGCAACCACGGCGAGATGCTTTGAAGGAACAAGTGAAATTGTACAGAGATGTCCCCGTTAAAACAATGAGAGATAATTTGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_2 TPR_8

Protein Analysis

240

Amino Acids

27.45

Weight (kDa)

9.66

Isoelectric Point (pI)

25.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_16	PF13432	69 - 125	1.2e-07	Tetratricopeptide repeat
TPR_2	PF07719	99 - 131	3.4e-07	Tetratricopeptide repeat
TPR_1	PF00515	100 - 131	5e-07	Tetratricopeptide repeat
TPR_12	PF13424	144 - 204	6.3e-06	Tetratricopeptide repeat
TPR_16	PF13432	148 - 204	1.2e-07	Tetratricopeptide repeat
TPR_2	PF07719	178 - 210	3.4e-07	Tetratricopeptide repeat
TPR_1	PF00515	179 - 210	5e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22700 AT1G22700 AT1G22700
fragaria_vesca	FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740
malus_domestica	MD12G1013600.v1.1 MD14G1011000.v1.1
prunus_persica	Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1
pyrus_communis	pycom12g01090 pycom14g00950 pycom14g00980
rosa_chinensis	RchiOBHm_Chr2g0092511 RchiOBHm_Chr3g0495761 RchiOBHm_Chr7g0199541 RchiOBHm_Chr7g0219671
rosa_laevigata	RLG00000022588
rosa_multiflora	Rmu_sc0025082.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308790 Rroxscaffold_6G00390030 Rroxscaffold_6G00405380
rosa_rugosa	Rorug03G0276400
rosa_samantha	Rh3AG323600 Rh3BG359400 Rh3CG355800 Rh3DG359000 Rh7AG179900 Rh7AG300200 Rh7CG188900 Rh7CG348000 Rh7DG182600 Rh7DG326100
rosa_wichuraiana	Rw3G028290 Rw7G015800 Rw7G027840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	1 cut(s)	111
AfaI	GTAC	1 cut(s)	680
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	5 cut(s)	136, 365, 424, 602, 661
AhdI	GACNNNNNGTC	2 cut(s)	343, 580
AjnI	CCWGG	2 cut(s)	283, 520
AluBI	AGCT	4 cut(s)	238, 277, 475, 514
AluI	AGCT	4 cut(s)	238, 277, 475, 514
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	3 cut(s)	64, 80, 111
Asp700I	GAANNNNTTC	2 cut(s)	372, 609
AspS9I	GGNCC	1 cut(s)	81
AsuHPI	GGTGA	5 cut(s)	139, 283, 326, 520, 563
AxyI	CCTNAGG	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	113
BccI	CCATC	4 cut(s)	134, 158, 224, 461
BceAI	ACGGC	2 cut(s)	425, 662
BciT130I	CCWGG	2 cut(s)	285, 522
BfaI	CTAG	1 cut(s)	721
BfrI	CTTAAG	1 cut(s)	101
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
Bme1390I	CCNGG	2 cut(s)	285, 522
BmeRI	GACNNNNNGTC	2 cut(s)	343, 580
BmgT120I	GGNCC	1 cut(s)	81
BmrFI	CCNGG	2 cut(s)	285, 522
BmsI	GCATC	5 cut(s)	80, 307, 406, 544, 643
Bpu10I	CCTNAGC	2 cut(s)	243, 480
BsaBI	GATNNNNATC	2 cut(s)	11, 149
BsaJI	CCNNGG	6 cut(s)	208, 310, 407, 445, 547, 644
Bse21I	CCTNAGG	1 cut(s)	163
Bse8I	GATNNNNATC	2 cut(s)	11, 149
BseBI	CCWGG	2 cut(s)	285, 522
BseDI	CCNNGG	6 cut(s)	208, 310, 407, 445, 547, 644
BseGI	GGATG	4 cut(s)	145, 150, 280, 517
BseJI	GATNNNNATC	2 cut(s)	11, 149
BshFI	GGCC	3 cut(s)	66, 82, 113
BslFI	GGGAC	1 cut(s)	674
BsmFI	GGGAC	1 cut(s)	674
BsmI	GAATGC	2 cut(s)	361, 598
BsnI	GGCC	3 cut(s)	66, 82, 113
Bsp1407I	TGTACA	1 cut(s)	678
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	3 cut(s)	66, 82, 113
BspPI	GGATC	1 cut(s)	152
BspTI	CTTAAG	1 cut(s)	101
BsrGI	TGTACA	1 cut(s)	678
BssECI	CCNNGG	6 cut(s)	208, 310, 407, 445, 547, 644
BssMI	GATC	1 cut(s)	144
BssT1I	CCWWGG	4 cut(s)	208, 310, 445, 547
Bst2UI	CCWGG	2 cut(s)	285, 522
Bst4CI	ACNGT	3 cut(s)	60, 271, 508
BstAFI	CTTAAG	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	678
BstC8I	GCNNGC	3 cut(s)	31, 240, 477
BstDEI	CTNAG	3 cut(s)	163, 243, 480
BstDSI	CCRYGG	2 cut(s)	407, 644
BstF5I	GGATG	4 cut(s)	145, 150, 280, 517
BstKTI	GATC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	6 cut(s)	88, 119, 356, 409, 593, 646
BstNI	CCWGG	2 cut(s)	285, 522
BstSCI	CCNGG	2 cut(s)	283, 520
Bsu36I	CCTNAGG	1 cut(s)	163
BsuRI	GGCC	3 cut(s)	66, 82, 113
BtgI	CCRYGG	2 cut(s)	407, 644
BtsCI	GGATG	4 cut(s)	145, 150, 280, 517
Cac8I	GCNNGC	3 cut(s)	31, 240, 477
Cfr13I	GGNCC	1 cut(s)	81
CseI	GACGC	2 cut(s)	409, 646
Csp6I	GTAC	1 cut(s)	679
CviAII	CATG	1 cut(s)	117
CviQI	GTAC	1 cut(s)	679
DdeI	CTNAG	3 cut(s)	163, 243, 480
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
DraI	TTTAAA	2 cut(s)	262, 499
DriI	GACNNNNNGTC	2 cut(s)	343, 580
EaeI	YGGCCR	1 cut(s)	111
Eam1105I	GACNNNNNGTC	2 cut(s)	343, 580
Eco130I	CCWWGG	4 cut(s)	208, 310, 445, 547
Eco32I	GATATC	1 cut(s)	185
Eco81I	CCTNAGG	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	283, 520
EcoRV	GATATC	1 cut(s)	185
EcoT14I	CCWWGG	4 cut(s)	208, 310, 445, 547
EcoT22I	ATGCAT	2 cut(s)	361, 598
ErhI	CCWWGG	4 cut(s)	208, 310, 445, 547
FaeI	CATG	1 cut(s)	120
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	1 cut(s)	116
Fnu4HI	GCNGC	1 cut(s)	80
FokI	GGATG	4 cut(s)	137, 152, 267, 504
Fsp4HI	GCNGC	1 cut(s)	80
FspBI	CTAG	1 cut(s)	721
GluI	GCNGC	1 cut(s)	80
HaeIII	GGCC	3 cut(s)	66, 82, 113
HgaI	GACGC	2 cut(s)	409, 646
Hin1II	CATG	1 cut(s)	120
HindIII	AAGCTT	4 cut(s)	236, 275, 473, 512
HinfI	GANTC	1 cut(s)	7
HphI	GGTGA	5 cut(s)	139, 283, 326, 520, 563
Hpy166II	GTNNAC	2 cut(s)	199, 436
Hpy188I	TCNGA	2 cut(s)	354, 591
Hpy8I	GTNNAC	2 cut(s)	199, 436
HpyAV	CCTTC	4 cut(s)	45, 130, 418, 655
HpyCH4III	ACNGT	3 cut(s)	60, 271, 508
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	4 cut(s)	33, 71, 359, 596
HpyF10VI	GCNNNNNNNGC	6 cut(s)	88, 119, 356, 409, 593, 646
HpyF3I	CTNAG	3 cut(s)	163, 243, 480
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	120
Kzo9I	GATC	1 cut(s)	144
LpnPI	CCDG	4 cut(s)	270, 297, 507, 534
LweI	GCATC	5 cut(s)	80, 307, 406, 544, 643
MaeI	CTAG	1 cut(s)	721
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	4 cut(s)	292, 397, 529, 634
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	3 cut(s)	16, 377, 614
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	6 cut(s)	85, 173, 249, 486, 674, 712
MluNI	TGGCCA	1 cut(s)	113
MnlI	CCTC	2 cut(s)	102, 163
Mox20I	TGGCCA	1 cut(s)	113
Mph1103I	ATGCAT	2 cut(s)	361, 598
MroXI	GAANNNNTTC	2 cut(s)	372, 609
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	6 cut(s)	102, 261, 342, 498, 579, 696
Msp20I	TGGCCA	1 cut(s)	113
MspCI	CTTAAG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	285, 522
Mva1269I	GAATGC	2 cut(s)	361, 598
MvaI	CCWGG	2 cut(s)	285, 522
MwoI	GCNNNNNNNGC	6 cut(s)	88, 119, 356, 409, 593, 646
NdeII	GATC	1 cut(s)	144
NlaIII	CATG	1 cut(s)	120
NmuCI	GTSAC	2 cut(s)	397, 634
NsiI	ATGCAT	2 cut(s)	361, 598
PctI	GAATGC	2 cut(s)	361, 598
PdmI	GAANNNNTTC	2 cut(s)	372, 609
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	81
Psp6I	CCWGG	2 cut(s)	283, 520
PspGI	CCWGG	2 cut(s)	283, 520
PspPI	GGNCC	1 cut(s)	81
RsaI	GTAC	1 cut(s)	680
RsaNI	GTAC	1 cut(s)	679
SaqAI	TTAA	6 cut(s)	102, 261, 342, 498, 579, 696
SatI	GCNGC	1 cut(s)	80
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	1 cut(s)	81
ScrFI	CCNGG	2 cut(s)	285, 522
SfaNI	GCATC	5 cut(s)	80, 307, 406, 544, 643
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	6 cut(s)	85, 173, 249, 486, 674, 712
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	1 cut(s)	721
StyD4I	CCNGG	2 cut(s)	283, 520
StyI	CCWWGG	4 cut(s)	208, 310, 445, 547
TaaI	ACNGT	3 cut(s)	60, 271, 508
TaiI	ACGT	1 cut(s)	110
TasI	AATT	6 cut(s)	85, 173, 249, 486, 674, 712
TatI	WGTACW	1 cut(s)	678
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	6 cut(s)	102, 261, 342, 498, 579, 696
Tru9I	TTAA	6 cut(s)	102, 261, 342, 498, 579, 696
TseFI	GTSAC	2 cut(s)	397, 634
Tsp45I	GTSAC	2 cut(s)	397, 634
TspDTI	ATGAA	5 cut(s)	17, 269, 339, 506, 576
TspGWI	ACGGA	2 cut(s)	215, 452
Vha464I	CTTAAG	1 cut(s)	101
XmnI	GAANNNNTTC	2 cut(s)	372, 609
XspI	CTAG	1 cut(s)	721
Zsp2I	ATGCAT	2 cut(s)	361, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.