Rh3BG359400

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002388
Physical Location & Seq
Reverse (-)
43135159 .. 43138258
3100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG359400.1

Sequence Viewer

Length: 936 bp
ATGGCCACTGTCCTCAGAAGTCCACCTTTGCGAGCACCAACACCAAAACCTTCGTACGTTTGGTCTCGACACTTGACCCCTCAAACCTCTCTGCCGTCTCTCCGCTCCCTCAAGCTTTTGCCGTTGGCTTCCCACCGTCAAATTGAAACCACCAAACACGTCCAGGCAGATATCCCAAGGAGAAGGACGAGCATTGGAAATCCATACCTCAACAGATTTGCACAGAAAACTTTGGTTACCAGAGGTATTCAAGATGTGAAGAAGCCTTATACATGGATATCTACATTCTTAATTGGACAGAGCTTATGGCTGATCTCTACACCAATGGCACAATCACGTGAAATTATAAAAACAAATGTGGTTTATGAGACTGGAGAGTTATTTGAATTGGGAATTCAGCTTTCATACTTGCTACTATTGTTGGGTTTTCTTGGGATTGGAACCTTCTTTGTGATTCGTCAAGTACTTGTACGTAGAGAACTCGATCTTTCTGCCAAAGAATTGCAAGAGCAGGTACGAAGTGGCGATGCTAGTGCAACGGAGCTTTTTGAACTTGGAGCAGTGATGCTGAGGAGAAAAATTTATCCAGCTGCTACAAAGTACTTGGTTCAGGCAATTGAGAAATGGGATGGGGATGACCAAGATCTTGCTCAGGTTTACAATGCCCTTGGGGTCAGTTATGTCCGTGATGGGAAGCTTGCTAAGGGAATTACCATGTTTGAAACTGCGGTGAAGCTTCAGCCAGGCTATGTTACTGCTTGGAACAACCTTGGTGATGCCTATGAACAGAAGAAAGACTTTAAGTCTGCCCTGAATGCATTTGAAGAAGTGCTTCTTTTTGATCCTAACAACAAAGTGGCGCAACCACGGCGAGATGCTTTGAAGGAACAAGTGAAATTGTACAGAGATGTCCCCGTTAAAACAAAGGAGAGATAA

Protein Analysis

311

Amino Acids

35.36

Weight (kDa)

9.73

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 215 - 278 4e-08 Tetratricopeptide repeat
TPR_16 PF13432 222 - 278 1.1e-08 Tetratricopeptide repeat
TPR_19 PF14559 229 - 285 7.4e-06 Tetratricopeptide repeat
TPR_2 PF07719 252 - 284 1.6e-07 Tetratricopeptide repeat
TPR_8 PF13181 252 - 284 5e-06 Tetratricopeptide repeat
TPR_1 PF00515 253 - 284 7e-08 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 347
Acc36I ACCTGC 1 cut(s) 502
AccBSI CCGCTC 1 cut(s) 105
AciI CCGC 2 cut(s) 103, 728
AclWI GGATC 1 cut(s) 836
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 393, 579
AcuI CTGAAG 1 cut(s) 722
AcvI CACGTG 1 cut(s) 338
AfaI GTAC 6 cut(s) 56, 465, 471, 516, 602, 902
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 7 cut(s) 146, 251, 386, 551, 722, 824, 883
AhdI GACNNNNNGTC 1 cut(s) 802
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 2 cut(s) 162, 742
AluBI AGCT 7 cut(s) 115, 303, 400, 544, 590, 697, 736
AluI AGCT 7 cut(s) 115, 303, 400, 544, 590, 697, 736
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 3 cut(s) 69, 102, 362
AlwI GGATC 1 cut(s) 836
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 590
ApoI RAATTY 2 cut(s) 393, 579
Asp700I GAANNNNTTC 1 cut(s) 831
AspLEI GCGC 1 cut(s) 862
AsuHPI GGTGA 2 cut(s) 742, 785
BalI TGGCCA 1 cut(s) 5
BbrPI CACGTG 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 37
BbvCI CCTCAGC 1 cut(s) 569
BbvI GCAGC 1 cut(s) 577
BccI CCATC 2 cut(s) 623, 683
BceAI ACGGC 3 cut(s) 79, 106, 884
BcgI CGANNNNNNTGC 4 cut(s) 473, 507, 515, 549
BciT130I CCWGG 2 cut(s) 164, 744
BcoDI GTCTC 3 cut(s) 69, 102, 362
BfaI CTAG 1 cut(s) 531
BfuAI ACCTGC 1 cut(s) 502
BglII AGATCT 1 cut(s) 643
BisI GCNGC 1 cut(s) 591
BlsI GCNGC 1 cut(s) 592
BmcAI AGTACT 2 cut(s) 465, 602
Bme1390I CCNGG 2 cut(s) 164, 744
BmeRI GACNNNNNGTC 1 cut(s) 802
BmgBI CACGTC 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 2 cut(s) 164, 744
BmsI GCATC 4 cut(s) 517, 555, 766, 865
BpmI CTGGAG 1 cut(s) 393
Bpu10I CCTNAGC 3 cut(s) 569, 651, 702
BpuEI CTTGAG 1 cut(s) 95
BsaAI YACGTR 2 cut(s) 338, 473
BsaI GGTCTC 1 cut(s) 69
BsaJI CCNNGG 4 cut(s) 176, 667, 769, 866
Bse1I ACTGG 1 cut(s) 376
BseBI CCWGG 2 cut(s) 164, 744
BseDI CCNNGG 4 cut(s) 176, 667, 769, 866
BseGI GGATG 2 cut(s) 634, 640
BseMII CTCAG 3 cut(s) 28, 560, 665
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 1 cut(s) 586
BseXI GCAGC 1 cut(s) 577
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 37
BsiWI CGTACG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 896
BsmAI GTCTC 3 cut(s) 69, 102, 362
BsmBI CGTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 896
BsmI GAATGC 1 cut(s) 820
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 37
Bsp1407I TGTACA 1 cut(s) 900
Bsp143I GATC 4 cut(s) 312, 484, 643, 841
BspACI CCGC 2 cut(s) 103, 728
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 27, 561, 664
BspLI GGNNCC 1 cut(s) 442
BspMI ACCTGC 1 cut(s) 502
BspPI GGATC 1 cut(s) 836
BspTNI GGTCTC 1 cut(s) 69
BsrBI CCGCTC 1 cut(s) 105
BsrGI TGTACA 1 cut(s) 900
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 4 cut(s) 176, 667, 769, 866
BssMI GATC 4 cut(s) 312, 484, 643, 841
BssT1I CCWWGG 3 cut(s) 176, 667, 769
Bst2UI CCWGG 2 cut(s) 164, 744
Bst4CI ACNGT 2 cut(s) 10, 137
BstAUI TGTACA 1 cut(s) 900
BstBAI YACGTR 2 cut(s) 338, 473
BstC8I GCNNGC 2 cut(s) 33, 699
BstDEI CTNAG 4 cut(s) 14, 569, 651, 702
BstDSI CCRYGG 1 cut(s) 866
BstEII GGTNACC 1 cut(s) 235
BstF5I GGATG 2 cut(s) 634, 640
BstHHI GCGC 1 cut(s) 862
BstKTI GATC 4 cut(s) 315, 487, 646, 844
BstMAI GTCTC 3 cut(s) 69, 102, 362
BstMBI GATC 4 cut(s) 312, 484, 643, 841
BstMWI GCNNNNNNNGC 2 cut(s) 815, 868
BstNI CCWGG 2 cut(s) 164, 744
BstPI GGTNACC 1 cut(s) 235
BstSCI CCNGG 2 cut(s) 162, 742
BstSNI TACGTA 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 577
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 866
BtgZI GCGATG 1 cut(s) 540
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 2 cut(s) 634, 640
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 2 cut(s) 6, 567
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 2 cut(s) 33, 699
CfoI GCGC 1 cut(s) 862
Csp6I GTAC 6 cut(s) 55, 464, 470, 515, 601, 901
CviAII CATG 2 cut(s) 273, 715
CviQI GTAC 6 cut(s) 55, 464, 470, 515, 601, 901
DdeI CTNAG 4 cut(s) 14, 569, 651, 702
DpnI GATC 4 cut(s) 314, 486, 645, 843
DpnII GATC 4 cut(s) 312, 484, 643, 841
DriI GACNNNNNGTC 1 cut(s) 802
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 802
Eco105I TACGTA 1 cut(s) 473
Eco130I CCWWGG 3 cut(s) 176, 667, 769
Eco31I GGTCTC 1 cut(s) 69
Eco32I GATATC 2 cut(s) 172, 279
Eco57I CTGAAG 1 cut(s) 722
Eco72I CACGTG 1 cut(s) 338
Eco91I GGTNACC 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 393
EcoRII CCWGG 2 cut(s) 162, 742
EcoRV GATATC 2 cut(s) 172, 279
EcoT14I CCWWGG 3 cut(s) 176, 667, 769
EcoT22I ATGCAT 1 cut(s) 820
ErhI CCWWGG 3 cut(s) 176, 667, 769
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 2 cut(s) 276, 718
FalI AAGNNNNNCTT 8 cut(s) 10, 42, 782, 814, 816, 848, 819, 851
FaqI GGGAC 1 cut(s) 896
FatI CATG 2 cut(s) 272, 714
Fnu4HI GCNGC 1 cut(s) 591
FokI GGATG 2 cut(s) 641, 647
Fsp4HI GCNGC 1 cut(s) 591
FspBI CTAG 1 cut(s) 531
GlaI GCGC 1 cut(s) 861
GluI GCNGC 1 cut(s) 591
GsuI CTGGAG 1 cut(s) 393
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 862
Hin1II CATG 2 cut(s) 276, 718
Hin6I GCGC 1 cut(s) 860
HinP1I GCGC 1 cut(s) 860
HindIII AAGCTT 3 cut(s) 113, 695, 734
HinfI GANTC 1 cut(s) 454
HphI GGTGA 2 cut(s) 742, 785
Hpy166II GTNNAC 2 cut(s) 23, 658
Hpy188I TCNGA 1 cut(s) 17
Hpy188III TCNNGA 2 cut(s) 66, 251
Hpy8I GTNNAC 2 cut(s) 23, 658
HpyAV CCTTC 4 cut(s) 60, 177, 454, 877
HpyCH4III ACNGT 2 cut(s) 10, 137
HpyCH4IV ACGT 4 cut(s) 57, 159, 337, 472
HpyCH4V TGCA 4 cut(s) 221, 505, 536, 818
HpyF10VI GCNNNNNNNGC 2 cut(s) 815, 868
HpyF3I CTNAG 4 cut(s) 14, 569, 651, 702
HpySE526I ACGT 4 cut(s) 57, 159, 337, 472
Hsp92II CATG 2 cut(s) 276, 718
HspAI GCGC 1 cut(s) 860
Kzo9I GATC 4 cut(s) 312, 484, 643, 841
LmnI GCTCC 3 cut(s) 110, 541, 557
Lsp1109I GCAGC 1 cut(s) 577
LweI GCATC 4 cut(s) 517, 555, 766, 865
MaeI CTAG 1 cut(s) 531
MaeII ACGT 4 cut(s) 57, 159, 337, 472
MaeIII GTNAC 2 cut(s) 235, 751
MalI GATC 4 cut(s) 314, 486, 645, 843
MbiI CCGCTC 1 cut(s) 105
MboI GATC 4 cut(s) 312, 484, 643, 841
MboII GAAGA 3 cut(s) 271, 802, 836
MfeI CAATTG 1 cut(s) 615
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 1 cut(s) 37
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 7 cut(s) 23, 90, 97, 119, 218, 236, 564
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 820
MroXI GAANNNNTTC 1 cut(s) 831
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 290, 801, 918
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 590
MspR9I CCNGG 2 cut(s) 164, 744
MunI CAATTG 1 cut(s) 615
Mva1269I GAATGC 1 cut(s) 820
MvaI CCWGG 2 cut(s) 164, 744
MwoI GCNNNNNNNGC 2 cut(s) 815, 868
NdeII GATC 4 cut(s) 312, 484, 643, 841
NlaIII CATG 2 cut(s) 276, 718
NlaIV GGNNCC 1 cut(s) 442
NsiI ATGCAT 1 cut(s) 820
PctI GAATGC 1 cut(s) 820
PdmI GAANNNNTTC 1 cut(s) 831
PfeI GAWTC 1 cut(s) 454
Pfl23II CGTACG 1 cut(s) 54
PkrI GCNGC 1 cut(s) 592
PmaCI CACGTG 1 cut(s) 338
PmlI CACGTG 1 cut(s) 338
Ppu21I YACGTR 2 cut(s) 338, 473
PsiI TTATAA 1 cut(s) 347
Psp6I CCWGG 2 cut(s) 162, 742
PspCI CACGTG 1 cut(s) 338
PspEI GGTNACC 1 cut(s) 235
PspGI CCWGG 2 cut(s) 162, 742
PspLI CGTACG 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 442
PsuI RGATCY 1 cut(s) 643
PvuII CAGCTG 1 cut(s) 590
RsaI GTAC 6 cut(s) 56, 465, 471, 516, 602, 902
RsaNI GTAC 6 cut(s) 55, 464, 470, 515, 601, 901
SaqAI TTAA 3 cut(s) 290, 801, 918
SatI GCNGC 1 cut(s) 591
Sau3AI GATC 4 cut(s) 312, 484, 643, 841
ScaI AGTACT 2 cut(s) 465, 602
ScrFI CCNGG 2 cut(s) 164, 744
SduI GDGCHC 1 cut(s) 37
SfaNI GCATC 4 cut(s) 517, 555, 766, 865
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SnaBI TACGTA 1 cut(s) 473
SsiI CCGC 2 cut(s) 103, 728
SspMI CTAG 1 cut(s) 531
StyD4I CCNGG 2 cut(s) 162, 742
StyI CCWWGG 3 cut(s) 176, 667, 769
TaaI ACNGT 2 cut(s) 10, 137
TaiI ACGT 4 cut(s) 60, 162, 340, 475
TaqI TCGA 2 cut(s) 67, 483
TatI WGTACW 3 cut(s) 463, 600, 900
TfiI GAWTC 1 cut(s) 454
Tru1I TTAA 3 cut(s) 290, 801, 918
Tru9I TTAA 3 cut(s) 290, 801, 918
TscAI CASTG 2 cut(s) 13, 567
TseI GCWGC 1 cut(s) 590
TspDTI ATGAA 2 cut(s) 393, 798
TspGWI ACGGA 2 cut(s) 554, 674
TspRI CASTG 2 cut(s) 13, 567
XapI RAATTY 2 cut(s) 393, 579
XmnI GAANNNNTTC 1 cut(s) 831
XspI CTAG 1 cut(s) 531
ZrmI AGTACT 2 cut(s) 465, 602
Zsp2I ATGCAT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.