Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002388

Physical Location & Seq

Genomic Coordinates Reverse (-)

948041 .. 951434

Gene Structure 3394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g01090.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCCACCGTCCTCCGAAATCCACCTTTACGAGCACCGTTAGCACCGCTTCCCGCCACCGTTTCGCCGAACCCTCCGAAAACTTCATACGTTTCGTGCAGACAAGGCTCGATCAGCACGCCGCCGTTTCTCACTCTCAGCTCTCTACGGTCATCTCACTCGCCGTCCGTACGGTTCCTCAAGTTCGCGCCTTTAGCTTCCCTACATGAGACCCTAAGTGCCGAGATGGCGGAGGAGCTTCGAGAGCTCAACGAGGTCGAGATACTCGGTGGAGAACTAGCAGTGGAAACTCCTGCCTCAACAGTTTTGGAGAAAATTTGTGGGATCCTTTTGGTTACCAAGGATATTAAATTCATGAAGAGGCCATTTGCATGGGTATCTGCATTCTTAGTTGGCCAAAGCTTATGGCTGATTTCTACTCCAATGGCACAATCACGTGATATTATCAAACCAAACGCGATTTATGAGACAGCGGAGTTATTTGAATTAGGAATCCAGCTATCATACTTGCTACTATTGCTAGGTTTTCTTGGGGTTGGAACTTTCTTTGTGATTCGTCAAGTGCTTGTACGTAGAGAACTTGATCTTTCTGCCAAAGAATTGCAGGAGCAAGTAAGAAGCGGCGATGCTGATGCGACTGAGCTTTTTGAACTTGGAGCAGTAATGCTGAGGAGGAAAATTTATCCAGCTGCTATTAAGTACTTGGTTCAGGCAATTGAGAAATGGGATGGGGACGACCAAGATGGATCGATCTTGCTCAGGTATGATGAATTCTCAGATATATTTACATTTCTCAGATATATTGTTTACAATGCCCTTGGTGTCAGTTACGTCCGTGAGGGTAAACTTGCTAAGGGAATTACGCAGTTTGAAACTGCCGTGAAGCTTCAGCCAGGCTACGTCACAGCTTGGAACAACCTAGGTGATGCCTATGAAAAGAGGAAAGACTTTAAGGCTGCACTGAAGGCATTTGAAGAAGTACTTCTGTTTGATCCAAATAACAAGGTAGCAATACCACGGCGGGAGACTTTGATGGAACAAGTGAAAATGTACAGAGATGTTCCGGTAAAAACAAAGGAGAAGTCATCTGACAGTATGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_2 TPR_8

Protein Analysis

368

Amino Acids

41.22

Weight (kDa)

7.65

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22700 AT1G22700 AT1G22700
fragaria_vesca	FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740
malus_domestica	MD12G1013600.v1.1 MD14G1011000.v1.1
prunus_persica	Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1
pyrus_communis	pycom12g01090 pycom14g00950 pycom14g00980
rosa_chinensis	RchiOBHm_Chr2g0092511 RchiOBHm_Chr3g0495761 RchiOBHm_Chr7g0199541 RchiOBHm_Chr7g0219671
rosa_laevigata	RLG00000022588
rosa_multiflora	Rmu_sc0025082.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308790 Rroxscaffold_6G00390030 Rroxscaffold_6G00405380
rosa_rugosa	Rorug03G0276400
rosa_samantha	Rh3AG323600 Rh3BG359400 Rh3CG355800 Rh3DG359000 Rh7AG179900 Rh7AG300200 Rh7CG188900 Rh7CG348000 Rh7DG182600 Rh7DG326100
rosa_wichuraiana	Rw3G028290 Rw7G015800 Rw7G027840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	188, 458
AciI	CCGC	7 cut(s)	47, 54, 122, 230, 473, 621, 1021
AclWI	GGATC	4 cut(s)	319, 332, 754, 986
AcoI	YGGCCR	2 cut(s)	3, 394
AcsI	RAATTY	4 cut(s)	315, 350, 678, 770
AcuI	CTGAAG	2 cut(s)	872, 983
AcvI	CACGTG	1 cut(s)	437
AfaI	GTAC	5 cut(s)	171, 570, 701, 981, 1052
AgsI	TTSAA	4 cut(s)	485, 650, 872, 974
AjnI	CCWGG	1 cut(s)	892
Alw21I	GWGCWC	2 cut(s)	37, 249
Alw26I	GTCTC	3 cut(s)	203, 461, 1019
AlwI	GGATC	4 cut(s)	319, 332, 754, 986
AoxI	GGCC	3 cut(s)	3, 362, 394
ApeKI	GCWGC	2 cut(s)	689, 956
ApoI	RAATTY	4 cut(s)	315, 350, 678, 770
ArsI	GACNNNNNNTTYG	2 cut(s)	1067, 1099
Asp700I	GAANNNNTTC	1 cut(s)	981
AspA2I	CCTAGG	1 cut(s)	919
AspLEI	GCGC	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	935
AvrII	CCTAGG	1 cut(s)	919
BalI	TGGCCA	2 cut(s)	5, 396
BamHI	GGATCC	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	249
BbrPI	CACGTG	1 cut(s)	437
Bbv12I	GWGCWC	2 cut(s)	37, 249
BbvCI	CCTCAGC	1 cut(s)	668
BbvI	GCAGC	2 cut(s)	676, 943
BccI	CCATC	4 cut(s)	220, 722, 737, 1027
BceAI	ACGGC	4 cut(s)	109, 148, 863, 1034
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciT130I	CCWGG	1 cut(s)	894
BcoDI	GTCTC	3 cut(s)	203, 461, 1019
BfaI	CTAG	3 cut(s)	278, 521, 920
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	4 cut(s)	122, 622, 690, 957
BlnI	CCTAGG	1 cut(s)	919
BlsI	GCNGC	4 cut(s)	123, 623, 691, 958
BmcAI	AGTACT	2 cut(s)	701, 981
Bme1390I	CCNGG	1 cut(s)	894
BmiI	GGNNCC	2 cut(s)	176, 326
BmrFI	CCNGG	1 cut(s)	894
BmsI	GCATC	3 cut(s)	616, 622, 916
Bpu10I	CCTNAGC	3 cut(s)	668, 758, 852
BpuEI	CTTGAG	1 cut(s)	164
Bsa29I	ATCGAT	1 cut(s)	749
BsaAI	YACGTR	2 cut(s)	437, 572
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	4 cut(s)	339, 817, 919, 1016
BsaWI	WCCGGW	1 cut(s)	1063
BseBI	CCWGG	1 cut(s)	894
BseCI	ATCGAT	1 cut(s)	749
BseDI	CCNNGG	4 cut(s)	339, 817, 919, 1016
BseGI	GGATG	1 cut(s)	733
BseMII	CTCAG	6 cut(s)	151, 630, 659, 772, 789, 808
BseRI	GAGGAG	2 cut(s)	248, 685
BseXI	GCAGC	2 cut(s)	676, 943
BsgI	GTGCAG	2 cut(s)	118, 942
Bsh1236I	CGCG	2 cut(s)	188, 458
BshFI	GGCC	3 cut(s)	5, 364, 396
BshVI	ATCGAT	1 cut(s)	749
BsiHKAI	GWGCWC	2 cut(s)	37, 249
BsiSI	CCGG	1 cut(s)	1064
BsiWI	CGTACG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	746
BsmAI	GTCTC	3 cut(s)	203, 461, 1019
BsmFI	GGGAC	1 cut(s)	746
BsmI	GAATGC	1 cut(s)	383
BsnI	GGCC	3 cut(s)	5, 364, 396
Bso31I	GGTCTC	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	37, 249
Bsp1407I	TGTACA	1 cut(s)	1050
Bsp143I	GATC	6 cut(s)	111, 324, 583, 746, 750, 991
BspACI	CCGC	7 cut(s)	47, 54, 122, 230, 473, 621, 1021
BspANI	GGCC	3 cut(s)	5, 364, 396
BspCNI	CTCAG	6 cut(s)	150, 631, 660, 771, 788, 807
BspDI	ATCGAT	1 cut(s)	749
BspFNI	CGCG	2 cut(s)	188, 458
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	2 cut(s)	176, 326
BspPI	GGATC	4 cut(s)	319, 332, 754, 986
BspTNI	GGTCTC	1 cut(s)	203
BsrGI	TGTACA	1 cut(s)	1050
BssECI	CCNNGG	4 cut(s)	339, 817, 919, 1016
BssMI	GATC	6 cut(s)	111, 324, 583, 746, 750, 991
BssT1I	CCWWGG	3 cut(s)	339, 817, 919
Bst2UI	CCWGG	1 cut(s)	894
Bst4CI	ACNGT	7 cut(s)	10, 39, 61, 150, 174, 304, 1094
Bst6I	CTCTTC	1 cut(s)	353
BstAUI	TGTACA	1 cut(s)	1050
BstBAI	YACGTR	2 cut(s)	437, 572
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	9 cut(s)	137, 215, 388, 639, 668, 758, 775, 794, 852
BstDSI	CCRYGG	1 cut(s)	1016
BstEII	GGTNACC	1 cut(s)	334
BstF5I	GGATG	1 cut(s)	733
BstFNI	CGCG	2 cut(s)	188, 458
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	6 cut(s)	114, 327, 586, 749, 753, 994
BstMAI	GTCTC	3 cut(s)	203, 461, 1019
BstMBI	GATC	6 cut(s)	111, 324, 583, 746, 750, 991
BstMWI	GCNNNNNNNGC	8 cut(s)	41, 105, 114, 194, 227, 244, 517, 965
BstNI	CCWGG	1 cut(s)	894
BstPI	GGTNACC	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	892
BstSNI	TACGTA	1 cut(s)	572
BstUI	CGCG	2 cut(s)	188, 458
BstV1I	GCAGC	2 cut(s)	676, 943
BstX2I	RGATCY	1 cut(s)	324
BstXI	CCANNNNNNTGG	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	324
Bsu15I	ATCGAT	1 cut(s)	749
BsuRI	GGCC	3 cut(s)	5, 364, 396
BsuTUI	ATCGAT	1 cut(s)	749
BtgI	CCRYGG	1 cut(s)	1016
BtgZI	GCGATG	1 cut(s)	639
BtsCI	GGATG	1 cut(s)	733
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	288, 959
Cac8I	GCNNGC	1 cut(s)	119
CciI	TCATGA	1 cut(s)	354
CfoI	GCGC	1 cut(s)	190
ClaI	ATCGAT	1 cut(s)	749
Csp6I	GTAC	5 cut(s)	170, 569, 700, 980, 1051
CviAII	CATG	3 cut(s)	206, 355, 372
CviQI	GTAC	5 cut(s)	170, 569, 700, 980, 1051
DdeI	CTNAG	9 cut(s)	137, 215, 388, 639, 668, 758, 775, 794, 852
DpnI	GATC	6 cut(s)	113, 326, 585, 748, 752, 993
DpnII	GATC	6 cut(s)	111, 324, 583, 746, 750, 991
EaeI	YGGCCR	2 cut(s)	3, 394
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
EciI	GGCGGA	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	247
Eco105I	TACGTA	1 cut(s)	572
Eco130I	CCWWGG	3 cut(s)	339, 817, 919
Eco24I	GRGCYC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	2 cut(s)	872, 983
Eco72I	CACGTG	1 cut(s)	437
Eco91I	GGTNACC	1 cut(s)	334
EcoICRI	GAGCTC	1 cut(s)	247
EcoO65I	GGTNACC	1 cut(s)	334
EcoRI	GAATTC	1 cut(s)	770
EcoRII	CCWGG	1 cut(s)	892
EcoT14I	CCWWGG	3 cut(s)	339, 817, 919
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	3 cut(s)	339, 817, 919
FaeI	CATG	3 cut(s)	209, 358, 375
FalI	AAGNNNNNCTT	2 cut(s)	966, 998
FaqI	GGGAC	1 cut(s)	746
FatI	CATG	3 cut(s)	205, 354, 371
FauI	CCCGC	2 cut(s)	61, 1014
Fnu4HI	GCNGC	4 cut(s)	122, 622, 690, 957
FokI	GGATG	1 cut(s)	740
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	4 cut(s)	122, 622, 690, 957
FspBI	CTAG	3 cut(s)	278, 521, 920
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	4 cut(s)	122, 622, 690, 957
HaeIII	GGCC	3 cut(s)	5, 364, 396
HapII	CCGG	1 cut(s)	1064
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	3 cut(s)	209, 358, 375
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HindIII	AAGCTT	2 cut(s)	400, 884
HinfI	GANTC	2 cut(s)	492, 553
HpaII	CCGG	1 cut(s)	1064
HphI	GGTGA	1 cut(s)	935
Hpy166II	GTNNAC	2 cut(s)	808, 845
Hpy188I	TCNGA	5 cut(s)	17, 78, 778, 797, 1090
Hpy188III	TCNNGA	3 cut(s)	242, 259, 355
Hpy8I	GTNNAC	2 cut(s)	808, 845
HpyAV	CCTTC	1 cut(s)	958
HpyCH4III	ACNGT	7 cut(s)	10, 39, 61, 150, 174, 304, 1094
HpyCH4IV	ACGT	5 cut(s)	90, 436, 571, 831, 900
HpyCH4V	TGCA	5 cut(s)	99, 371, 383, 604, 959
HpyF10VI	GCNNNNNNNGC	8 cut(s)	41, 105, 114, 194, 227, 244, 517, 965
HpyF3I	CTNAG	9 cut(s)	137, 215, 388, 639, 668, 758, 775, 794, 852
HpySE526I	ACGT	5 cut(s)	90, 436, 571, 831, 900
Hsp92II	CATG	3 cut(s)	209, 358, 375
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	6 cut(s)	111, 324, 583, 746, 750, 991
LmnI	GCTCC	3 cut(s)	235, 607, 656
LpnPI	CCDG	9 cut(s)	306, 509, 590, 695, 699, 745, 879, 906, 1077
Lsp1109I	GCAGC	2 cut(s)	676, 943
LweI	GCATC	3 cut(s)	616, 622, 916
MaeI	CTAG	3 cut(s)	278, 521, 920
MaeII	ACGT	5 cut(s)	90, 436, 571, 831, 900
MaeIII	GTNAC	3 cut(s)	334, 827, 901
MalI	GATC	6 cut(s)	113, 326, 585, 748, 752, 993
MboI	GATC	6 cut(s)	111, 324, 583, 746, 750, 991
MboII	GAAGA	2 cut(s)	370, 986
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	2 cut(s)	37, 249
MlsI	TGGCCA	2 cut(s)	5, 396
MluCI	AATT	8 cut(s)	315, 350, 485, 599, 678, 714, 770, 858
MluNI	TGGCCA	2 cut(s)	5, 396
MmeI	TCCRAC	1 cut(s)	517
Mox20I	TGGCCA	2 cut(s)	5, 396
MroXI	GAANNNNTTC	1 cut(s)	981
MscI	TGGCCA	2 cut(s)	5, 396
MseI	TTAA	3 cut(s)	348, 696, 951
MslI	CAYNNNNRTG	1 cut(s)	370
Msp20I	TGGCCA	2 cut(s)	5, 396
MspA1I	CMGCKG	2 cut(s)	473, 689
MspI	CCGG	1 cut(s)	1064
MspR9I	CCNGG	1 cut(s)	894
MunI	CAATTG	1 cut(s)	714
Mva1269I	GAATGC	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	894
MvnI	CGCG	2 cut(s)	188, 458
MwoI	GCNNNNNNNGC	8 cut(s)	41, 105, 114, 194, 227, 244, 517, 965
NdeII	GATC	6 cut(s)	111, 324, 583, 746, 750, 991
NlaIII	CATG	3 cut(s)	209, 358, 375
NlaIV	GGNNCC	2 cut(s)	176, 326
NmeAIII	GCCGAG	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	901
PagI	TCATGA	1 cut(s)	354
PctI	GAATGC	1 cut(s)	383
PdmI	GAANNNNTTC	1 cut(s)	981
PfeI	GAWTC	2 cut(s)	492, 553
Pfl23II	CGTACG	1 cut(s)	169
PkrI	GCNGC	4 cut(s)	123, 623, 691, 958
PmaCI	CACGTG	1 cut(s)	437
PmlI	CACGTG	1 cut(s)	437
Ppu21I	YACGTR	2 cut(s)	437, 572
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	892
PspCI	CACGTG	1 cut(s)	437
PspEI	GGTNACC	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	892
PspLI	CGTACG	1 cut(s)	169
PspN4I	GGNNCC	2 cut(s)	176, 326
PsuI	RGATCY	1 cut(s)	324
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	5 cut(s)	171, 570, 701, 981, 1052
RsaNI	GTAC	5 cut(s)	170, 569, 700, 980, 1051
RseI	CAYNNNNRTG	1 cut(s)	370
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	3 cut(s)	348, 696, 951
SatI	GCNGC	4 cut(s)	122, 622, 690, 957
Sau3AI	GATC	6 cut(s)	111, 324, 583, 746, 750, 991
ScaI	AGTACT	2 cut(s)	701, 981
ScrFI	CCNGG	1 cut(s)	894
SduI	GDGCHC	2 cut(s)	37, 249
SfaNI	GCATC	3 cut(s)	616, 622, 916
SmiMI	CAYNNNNRTG	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SnaBI	TACGTA	1 cut(s)	572
Sse9I	AATT	8 cut(s)	315, 350, 485, 599, 678, 714, 770, 858
SsiI	CCGC	7 cut(s)	47, 54, 122, 230, 473, 621, 1021
SspMI	CTAG	3 cut(s)	278, 521, 920
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	892
StyI	CCWWGG	3 cut(s)	339, 817, 919
TaaI	ACNGT	7 cut(s)	10, 39, 61, 150, 174, 304, 1094
TaiI	ACGT	5 cut(s)	93, 439, 574, 834, 903
TaqI	TCGA	4 cut(s)	110, 241, 258, 749
TasI	AATT	8 cut(s)	315, 350, 485, 599, 678, 714, 770, 858
TatI	WGTACW	3 cut(s)	699, 979, 1050
TauI	GCSGC	2 cut(s)	124, 624
TfiI	GAWTC	2 cut(s)	492, 553
Tru1I	TTAA	3 cut(s)	348, 696, 951
Tru9I	TTAA	3 cut(s)	348, 696, 951
TscAI	CASTG	2 cut(s)	288, 966
TseFI	GTSAC	1 cut(s)	901
TseI	GCWGC	2 cut(s)	689, 956
Tsp45I	GTSAC	1 cut(s)	901
TspDTI	ATGAA	5 cut(s)	75, 343, 371, 783, 948
TspGWI	ACGGA	2 cut(s)	157, 824
TspRI	CASTG	2 cut(s)	288, 966
XapI	RAATTY	4 cut(s)	315, 350, 678, 770
XmaJI	CCTAGG	1 cut(s)	919
XmnI	GAANNNNTTC	1 cut(s)	981
XspI	CTAG	3 cut(s)	278, 521, 920
ZrmI	AGTACT	2 cut(s)	701, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.