FvH4_1g29740

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002388
Physical Location & Seq
Forward (+)
23170710 .. 23173775
3066 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29740.t1

Sequence Viewer

Length: 837 bp
ATGCCTCAGCTCCCTCAATATGTTGCCGTTGGCTTCCCACCGTCATATTCCAACCACCAAACATGTCGAGATATCCCAAGGAGAAGGACTAGCAGTGGAAATCCATACCTCAACAAATTTGCAGAGAAAACCTTGGTTACCGGAGGTACTCAAGATGTTAAGAAGCCTTACACATGGATACCTACATTTTTAACTGGACAGAGCTTTTGGCTGATCTCTACACCAATGGCACAATCACTTGAAATTATCAAAACAAATGTGGTTTATGAGACTGGAGAGTTATTTGAATTGGGAATTCAGCTTTCGTACTTGCTACTATTGTTGGGTTTTCTGGGGATTGGAACCTTCTTTGTGATTCGTCAAGTACTTGTACGTAGAGAACTTGATCTTTCTGCCAAAGAATTGCAGGAGCAGGTAAGAAGTGGCGATGCTAGTGCAACTGAGCTTTTTGAACTTGGAGCAGTAATGCTGAGGAGAAAAATTTATCCAGCTGCTACAAAGTACTTGGTTCAGGCAATTGAGAAATGGGATGGGGATGATCAGGATCTTGCTCAGGTTTACAATGCCCTTGGGGTCAGTTATGTCCGTGATGGGAAGCTTGCTAAGGGAATTACCATGTTTGAAACTGCGGTGAAGCTCCAGCCTGGCTATGTCACTGCTTGGAATAACCTTGGTGATGCCTATGAACAGAAGAAAGATTTTAAGTCTGCCCTGAATGCATTTGAAGAAGTCCTTCTGTTTGATCCTAACAACAAAGTGGCCCAACCACGGCGAGATACTTTGAAAGAACAAGTGAAATTGTACAGAGATGTCCCTGTTAAAACAAAGGAGAGATAA

Protein Analysis

279

Amino Acids

31.54

Weight (kDa)

8.92

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 182 - 245 3.3e-08 Tetratricopeptide repeat
TPR_16 PF13432 189 - 245 9.3e-09 Tetratricopeptide repeat
TPR_19 PF14559 196 - 251 7e-06 Tetratricopeptide repeat
TPR_2 PF07719 219 - 251 1.4e-07 Tetratricopeptide repeat
TPR_8 PF13181 219 - 251 4.2e-06 Tetratricopeptide repeat
TPR_1 PF00515 220 - 251 6e-08 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 403
AciI CCGC 1 cut(s) 629
AclWI GGATC 2 cut(s) 552, 737
AcsI RAATTY 3 cut(s) 116, 294, 480
AfaI GTAC 6 cut(s) 148, 308, 366, 372, 503, 803
AfiI CCNNNNNNNGG 1 cut(s) 768
AflIII ACRYGT 1 cut(s) 62
AgsI TTSAA 6 cut(s) 242, 287, 452, 623, 725, 784
AjnI CCWGG 1 cut(s) 643
AluBI AGCT 7 cut(s) 10, 204, 301, 445, 491, 598, 637
AluI AGCT 7 cut(s) 10, 204, 301, 445, 491, 598, 637
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 2 cut(s) 552, 737
AoxI GGCC 1 cut(s) 759
ApeKI GCWGC 1 cut(s) 491
ApoI RAATTY 3 cut(s) 116, 294, 480
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
Asp700I GAANNNNTTC 1 cut(s) 732
AspS9I GGNCC 1 cut(s) 760
AsuHPI GGTGA 2 cut(s) 643, 686
BbvCI CCTCAGC 2 cut(s) 6, 470
BbvI GCAGC 1 cut(s) 478
BccI CCATC 2 cut(s) 524, 584
BceAI ACGGC 2 cut(s) 11, 785
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BciT130I CCWGG 1 cut(s) 645
BciVI GTATCC 1 cut(s) 171
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 2 cut(s) 90, 432
BfuAI ACCTGC 1 cut(s) 403
BfuI GTATCC 1 cut(s) 171
BisI GCNGC 1 cut(s) 492
BlsI GCNGC 1 cut(s) 493
BmcAI AGTACT 2 cut(s) 366, 503
Bme1390I CCNGG 1 cut(s) 645
BmgT120I GGNCC 1 cut(s) 760
BmiI GGNNCC 1 cut(s) 343
BmrFI CCNGG 1 cut(s) 645
BmsI GCATC 2 cut(s) 418, 667
BpmI CTGGAG 2 cut(s) 294, 623
Bpu10I CCTNAGC 4 cut(s) 6, 470, 552, 603
BpuEI CTTGAG 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 374
BsaBI GATNNNNATC 1 cut(s) 543
BsaJI CCNNGG 5 cut(s) 77, 132, 568, 670, 767
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 768
Bse1I ACTGG 2 cut(s) 199, 277
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 1 cut(s) 645
BseDI CCNNGG 5 cut(s) 77, 132, 568, 670, 767
BseGI GGATG 2 cut(s) 535, 541
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 1 cut(s) 768
BseMII CTCAG 4 cut(s) 20, 432, 461, 566
BseNI ACTGG 2 cut(s) 199, 277
BseRI GAGGAG 1 cut(s) 487
BseXI GCAGC 1 cut(s) 478
BshFI GGCC 1 cut(s) 761
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 797
BslI CCNNNNNNNGG 1 cut(s) 768
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 797
BsmI GAATGC 1 cut(s) 721
BsnI GGCC 1 cut(s) 761
Bsp1407I TGTACA 1 cut(s) 801
Bsp143I GATC 5 cut(s) 213, 385, 538, 544, 742
BspACI CCGC 1 cut(s) 629
BspANI GGCC 1 cut(s) 761
BspCNI CTCAG 4 cut(s) 19, 433, 462, 565
BspLI GGNNCC 1 cut(s) 343
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 2 cut(s) 552, 737
BsrGI TGTACA 1 cut(s) 801
BsrI ACTGG 2 cut(s) 199, 277
BssECI CCNNGG 5 cut(s) 77, 132, 568, 670, 767
BssMI GATC 5 cut(s) 213, 385, 538, 544, 742
BssT1I CCWWGG 4 cut(s) 77, 132, 568, 670
Bst2UI CCWGG 1 cut(s) 645
Bst4CI ACNGT 1 cut(s) 42
BstAUI TGTACA 1 cut(s) 801
BstBAI YACGTR 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 600
BstDEI CTNAG 5 cut(s) 6, 441, 470, 552, 603
BstDSI CCRYGG 1 cut(s) 767
BstEII GGTNACC 1 cut(s) 136
BstF5I GGATG 2 cut(s) 535, 541
BstKTI GATC 5 cut(s) 216, 388, 541, 547, 745
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 5 cut(s) 213, 385, 538, 544, 742
BstMWI GCNNNNNNNGC 1 cut(s) 716
BstNI CCWGG 1 cut(s) 645
BstNSI RCATGY 1 cut(s) 66
BstPI GGTNACC 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 643
BstSNI TACGTA 1 cut(s) 374
BstV1I GCAGC 1 cut(s) 478
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BsuI GTATCC 1 cut(s) 171
BsuRI GGCC 1 cut(s) 761
BtgI CCRYGG 1 cut(s) 767
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 2 cut(s) 535, 541
BtsI GCAGTG 2 cut(s) 100, 654
BtsIMutI CAGTG 2 cut(s) 100, 654
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 600
Cfr13I GGNCC 1 cut(s) 760
Csp6I GTAC 6 cut(s) 147, 307, 365, 371, 502, 802
CviAII CATG 3 cut(s) 63, 174, 616
CviQI GTAC 6 cut(s) 147, 307, 365, 371, 502, 802
DdeI CTNAG 5 cut(s) 6, 441, 470, 552, 603
DpnI GATC 5 cut(s) 215, 387, 540, 546, 744
DpnII GATC 5 cut(s) 213, 385, 538, 544, 742
Eco105I TACGTA 1 cut(s) 374
Eco130I CCWWGG 4 cut(s) 77, 132, 568, 670
Eco32I GATATC 1 cut(s) 73
Eco91I GGTNACC 1 cut(s) 136
EcoO65I GGTNACC 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 643
EcoRV GATATC 1 cut(s) 73
EcoT14I CCWWGG 4 cut(s) 77, 132, 568, 670
EcoT22I ATGCAT 1 cut(s) 721
ErhI CCWWGG 4 cut(s) 77, 132, 568, 670
FaeI CATG 3 cut(s) 66, 177, 619
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FaqI GGGAC 1 cut(s) 797
FatI CATG 3 cut(s) 62, 173, 615
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 1 cut(s) 492
FokI GGATG 2 cut(s) 542, 548
Fsp4HI GCNGC 1 cut(s) 492
FspBI CTAG 2 cut(s) 90, 432
GluI GCNGC 1 cut(s) 492
GsuI CTGGAG 2 cut(s) 294, 623
HaeIII GGCC 1 cut(s) 761
HapII CCGG 1 cut(s) 141
Hin1II CATG 3 cut(s) 66, 177, 619
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 1 cut(s) 355
HpaII CCGG 1 cut(s) 141
HphI GGTGA 2 cut(s) 643, 686
Hpy166II GTNNAC 1 cut(s) 559
Hpy188III TCNNGA 3 cut(s) 68, 152, 542
Hpy8I GTNNAC 1 cut(s) 559
HpyAV CCTTC 3 cut(s) 78, 355, 743
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 4 cut(s) 122, 406, 437, 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 716
HpyF3I CTNAG 5 cut(s) 6, 441, 470, 552, 603
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 3 cut(s) 66, 177, 619
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 5 cut(s) 213, 385, 538, 544, 742
LmnI GCTCC 4 cut(s) 15, 409, 458, 642
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 2 cut(s) 418, 667
MaeI CTAG 2 cut(s) 90, 432
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 2 cut(s) 136, 652
MalI GATC 5 cut(s) 215, 387, 540, 546, 744
MboI GATC 5 cut(s) 213, 385, 538, 544, 742
MboII GAAGA 2 cut(s) 703, 737
MfeI CAATTG 1 cut(s) 516
MflI RGATCY 1 cut(s) 544
MluCI AATT 9 cut(s) 116, 243, 287, 294, 401, 480, 516, 609, 797
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 5 cut(s) 15, 24, 119, 137, 465
Mph1103I ATGCAT 1 cut(s) 721
MroXI GAANNNNTTC 1 cut(s) 732
MseI TTAA 4 cut(s) 159, 191, 702, 819
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 645
MunI CAATTG 1 cut(s) 516
Mva1269I GAATGC 1 cut(s) 721
MvaI CCWGG 1 cut(s) 645
MwoI GCNNNNNNNGC 1 cut(s) 716
NdeII GATC 5 cut(s) 213, 385, 538, 544, 742
NlaIII CATG 3 cut(s) 66, 177, 619
NlaIV GGNNCC 1 cut(s) 343
NmuCI GTSAC 1 cut(s) 652
NsiI ATGCAT 1 cut(s) 721
NspI RCATGY 1 cut(s) 66
PciI ACATGT 1 cut(s) 62
PctI GAATGC 1 cut(s) 721
PdmI GAANNNNTTC 1 cut(s) 732
PfeI GAWTC 1 cut(s) 355
PkrI GCNGC 1 cut(s) 493
Ppu21I YACGTR 1 cut(s) 374
PscI ACATGT 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 643
PspEI GGTNACC 1 cut(s) 136
PspGI CCWGG 1 cut(s) 643
PspN4I GGNNCC 1 cut(s) 343
PspPI GGNCC 1 cut(s) 760
PsuI RGATCY 1 cut(s) 544
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 6 cut(s) 148, 308, 366, 372, 503, 803
RsaNI GTAC 6 cut(s) 147, 307, 365, 371, 502, 802
SaqAI TTAA 4 cut(s) 159, 191, 702, 819
SatI GCNGC 1 cut(s) 492
Sau3AI GATC 5 cut(s) 213, 385, 538, 544, 742
Sau96I GGNCC 1 cut(s) 760
ScaI AGTACT 2 cut(s) 366, 503
ScrFI CCNGG 1 cut(s) 645
SfaNI GCATC 2 cut(s) 418, 667
SmlI CTYRAG 1 cut(s) 150
SmoI CTYRAG 1 cut(s) 150
SnaBI TACGTA 1 cut(s) 374
Sse9I AATT 9 cut(s) 116, 243, 287, 294, 401, 480, 516, 609, 797
SsiI CCGC 1 cut(s) 629
SspMI CTAG 2 cut(s) 90, 432
StyD4I CCNGG 1 cut(s) 643
StyI CCWWGG 4 cut(s) 77, 132, 568, 670
TaaI ACNGT 1 cut(s) 42
TaiI ACGT 1 cut(s) 376
TaqI TCGA 1 cut(s) 67
TasI AATT 9 cut(s) 116, 243, 287, 294, 401, 480, 516, 609, 797
TatI WGTACW 3 cut(s) 364, 501, 801
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 4 cut(s) 159, 191, 702, 819
Tru9I TTAA 4 cut(s) 159, 191, 702, 819
TscAI CASTG 2 cut(s) 100, 661
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 1 cut(s) 491
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 1 cut(s) 699
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 2 cut(s) 100, 661
XapI RAATTY 3 cut(s) 116, 294, 480
XceI RCATGY 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 732
XspI CTAG 2 cut(s) 90, 432
ZrmI AGTACT 2 cut(s) 366, 503
Zsp2I ATGCAT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.