Tetratricopeptide repeat
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G22700 AT1G22700 AT1G22700 |
| fragaria_vesca | FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 |
| malus_domestica | MD12G1013600.v1.1 MD14G1011000.v1.1 |
| prunus_persica | Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 |
| pyrus_communis | pycom12g01090 pycom14g00950 pycom14g00980 |
| rosa_chinensis | RchiOBHm_Chr2g0092511 RchiOBHm_Chr3g0495761 RchiOBHm_Chr7g0199541 RchiOBHm_Chr7g0219671 |
| rosa_laevigata | RLG00000022588 |
| rosa_multiflora | Rmu_sc0025082.1_g000004 |
| rosa_roxburghii | Rroxscaffold_4G00308790 Rroxscaffold_6G00390030 Rroxscaffold_6G00405380 |
| rosa_rugosa | Rorug03G0276400 |
| rosa_samantha | Rh3AG323600 Rh3BG359400 Rh3CG355800 Rh3DG359000 Rh7AG179900 Rh7AG300200 Rh7CG188900 Rh7CG348000 Rh7DG182600 Rh7DG326100 |
| rosa_wichuraiana | Rw3G028290 Rw7G015800 Rw7G027840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 171 |
| AfaI | GTAC | 2 cut(s) | 38, 266 |
| AgsI | TTSAA | 2 cut(s) | 188, 247 |
| AluBI | AGCT | 1 cut(s) | 133 |
| AluI | AGCT | 1 cut(s) | 133 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 195 |
| AspLEI | GCGC | 1 cut(s) | 226 |
| AsuHPI | GGTGA | 1 cut(s) | 149 |
| BbvCI | CCTCAGC | 1 cut(s) | 5 |
| BccI | CCATC | 1 cut(s) | 59 |
| BceAI | ACGGC | 1 cut(s) | 248 |
| BglII | AGATCT | 1 cut(s) | 79 |
| BmcAI | AGTACT | 1 cut(s) | 38 |
| BmsI | GCATC | 2 cut(s) | 130, 229 |
| Bpu10I | CCTNAGC | 2 cut(s) | 5, 87 |
| BsaJI | CCNNGG | 2 cut(s) | 103, 230 |
| Bse1I | ACTGG | 1 cut(s) | 23 |
| BseDI | CCNNGG | 2 cut(s) | 103, 230 |
| BseGI | GGATG | 2 cut(s) | 70, 76 |
| BseMII | CTCAG | 1 cut(s) | 101 |
| BseNI | ACTGG | 1 cut(s) | 23 |
| BseRI | GAGGAG | 1 cut(s) | 22 |
| BsmI | GAATGC | 1 cut(s) | 184 |
| Bsp1407I | TGTACA | 1 cut(s) | 264 |
| Bsp143I | GATC | 1 cut(s) | 79 |
| BspACI | CCGC | 1 cut(s) | 171 |
| BspCNI | CTCAG | 1 cut(s) | 100 |
| BsrGI | TGTACA | 1 cut(s) | 264 |
| BsrI | ACTGG | 1 cut(s) | 23 |
| BssECI | CCNNGG | 2 cut(s) | 103, 230 |
| BssMI | GATC | 1 cut(s) | 79 |
| BssT1I | CCWWGG | 1 cut(s) | 103 |
| BstAUI | TGTACA | 1 cut(s) | 264 |
| BstDEI | CTNAG | 4 cut(s) | 5, 33, 40, 87 |
| BstDSI | CCRYGG | 1 cut(s) | 230 |
| BstF5I | GGATG | 2 cut(s) | 70, 76 |
| BstHHI | GCGC | 1 cut(s) | 226 |
| BstKTI | GATC | 1 cut(s) | 82 |
| BstMBI | GATC | 1 cut(s) | 79 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 179, 232 |
| BstX2I | RGATCY | 1 cut(s) | 79 |
| BstYI | RGATCY | 1 cut(s) | 79 |
| BtgI | CCRYGG | 1 cut(s) | 230 |
| BtsCI | GGATG | 2 cut(s) | 70, 76 |
| CfoI | GCGC | 1 cut(s) | 226 |
| Csp6I | GTAC | 2 cut(s) | 37, 265 |
| CviJI | RGCY | 1 cut(s) | 133 |
| CviKI_1 | RGCY | 1 cut(s) | 133 |
| CviQI | GTAC | 2 cut(s) | 37, 265 |
| DdeI | CTNAG | 4 cut(s) | 5, 33, 40, 87 |
| DpnI | GATC | 1 cut(s) | 81 |
| DpnII | GATC | 1 cut(s) | 79 |
| EciI | GGCGGA | 1 cut(s) | 160 |
| Eco130I | CCWWGG | 1 cut(s) | 103 |
| EcoT14I | CCWWGG | 1 cut(s) | 103 |
| EcoT22I | ATGCAT | 1 cut(s) | 184 |
| ErhI | CCWWGG | 1 cut(s) | 103 |
| FaiI | YATR | 3 cut(s) | 117, 147, 269 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 146, 178, 180, 212, 183, 215 |
| FokI | GGATG | 2 cut(s) | 77, 83 |
| GlaI | GCGC | 1 cut(s) | 225 |
| HhaI | GCGC | 1 cut(s) | 226 |
| Hin6I | GCGC | 1 cut(s) | 224 |
| HinP1I | GCGC | 1 cut(s) | 224 |
| HindIII | AAGCTT | 1 cut(s) | 131 |
| HphI | GGTGA | 1 cut(s) | 149 |
| Hpy166II | GTNNAC | 1 cut(s) | 94 |
| Hpy8I | GTNNAC | 1 cut(s) | 94 |
| HpyAV | CCTTC | 1 cut(s) | 241 |
| HpyCH4V | TGCA | 1 cut(s) | 182 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 179, 232 |
| HpyF3I | CTNAG | 4 cut(s) | 5, 33, 40, 87 |
| HspAI | GCGC | 1 cut(s) | 224 |
| Kzo9I | GATC | 1 cut(s) | 79 |
| LpnPI | CCDG | 4 cut(s) | 32, 36, 74, 188 |
| LweI | GCATC | 2 cut(s) | 130, 229 |
| MalI | GATC | 1 cut(s) | 81 |
| MboI | GATC | 1 cut(s) | 79 |
| MboII | GAAGA | 2 cut(s) | 166, 200 |
| MflI | RGATCY | 1 cut(s) | 79 |
| MluCI | AATT | 2 cut(s) | 51, 260 |
| MnlI | CCTC | 1 cut(s) | 287 |
| Mph1103I | ATGCAT | 1 cut(s) | 184 |
| MroXI | GAANNNNTTC | 1 cut(s) | 195 |
| MseI | TTAA | 3 cut(s) | 54, 165, 282 |
| Mva1269I | GAATGC | 1 cut(s) | 184 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 179, 232 |
| NdeII | GATC | 1 cut(s) | 79 |
| NsiI | ATGCAT | 1 cut(s) | 184 |
| PctI | GAATGC | 1 cut(s) | 184 |
| PdmI | GAANNNNTTC | 1 cut(s) | 195 |
| PsuI | RGATCY | 1 cut(s) | 79 |
| RsaI | GTAC | 2 cut(s) | 38, 266 |
| RsaNI | GTAC | 2 cut(s) | 37, 265 |
| SaqAI | TTAA | 3 cut(s) | 54, 165, 282 |
| Sau3AI | GATC | 1 cut(s) | 79 |
| ScaI | AGTACT | 1 cut(s) | 38 |
| SetI | ASST | 2 cut(s) | 93, 135 |
| SfaNI | GCATC | 2 cut(s) | 130, 229 |
| Sse9I | AATT | 2 cut(s) | 51, 260 |
| SsiI | CCGC | 1 cut(s) | 171 |
| StyI | CCWWGG | 1 cut(s) | 103 |
| TasI | AATT | 2 cut(s) | 51, 260 |
| TatI | WGTACW | 2 cut(s) | 36, 264 |
| Tru1I | TTAA | 3 cut(s) | 54, 165, 282 |
| Tru9I | TTAA | 3 cut(s) | 54, 165, 282 |
| TspDTI | ATGAA | 1 cut(s) | 162 |
| XmnI | GAANNNNTTC | 1 cut(s) | 195 |
| ZrmI | AGTACT | 1 cut(s) | 38 |
| Zsp2I | ATGCAT | 1 cut(s) | 184 |