Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002388

Physical Location & Seq

Genomic Coordinates Reverse (-)

2598694 .. 2602823

Gene Structure 4130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G018000.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCCACTGTCCTCAGAACTCCACCTCTGCGAGCACCATTTGTACCGCTTCCCACCACTGTTTCGCCAAACCTTCCAAAACCTTCATACGTTTCGTGTAGACAAGGCCAGAGCAGCACGGCACCGTATCTCACTCTCAGCTCTCTACGGTTCTATCACCTGCCGTCCCTCCGGTCCGTCAAGTTCGTGCCTATGGCTTCCCACAGTCAAACCCAAACTAGCGAGATCGAGGAGGGGGTTCGAGAGCTCAAGGAGGTCGAGATACTCCGAGAAGAACTATCAATGGAAGGTCTTACCTCAAAAAATTTGCAGAAGTTTTTTGAGAACCTTTTGGTTACTGGGCTTATTAAAGTCATGAAGAGGCCATATGTACCAGTATCTGCATTCTTAGTTGGACAAAGCTTATGGCTTATCTCTACTCCAATGGCACAATCACGTGATATTATCAAAACAAATGTCGTTTATGAGACGGGGGAGTTATTTGAATTAGGAATCCAGCTATCATACTTGCTACTATTGTTGGCATTTCTTGGGATTGGAACCTTCTTTGTGATTCGTCAAGTGCTTGTACGTAGAGAACTTGATCTTTCTGCCAAAGAATTGCAGGAGCAGGTAAGAAGCGGTGATGCTGATGCAACTGAGCTTTTTGAACTTGGAGCAGTAATGCTGAGAAGGAAAATTTATCCAGCTGCTATTAAGTACTTGGTTCAGGCAATTGAAAAATGGGATGGGGATGACCAAGATCTTGCTCAGGTTTACAATGCCCTTGGTGTCAGTTATATCCGTGAAGGTAAGCTTGCTAAGGGAATTACGCAGTTTGAAACTGCTGTCAAGCTTCAGCCGGGCTATGTCACAGCTTGGAACAACCTTGGTGATGCCTATGAAAAGAGGAAGGACTTTAAGGCTGCTCTGAATGCATTTGAAGAAGTACTTCTCTTTGATCCTAACAACAAGGTAGCAATACCACGGCGGGATACTTTGAAGGAACAAGTGAAAATGTACAGAGATGTTCCTGTGAAAACAAAGGAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_2 TPR_8

Protein Analysis

345

Amino Acids

38.94

Weight (kDa)

9.03

Isoelectric Point (pI)

50.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22700 AT1G22700 AT1G22700
fragaria_vesca	FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740
malus_domestica	MD12G1013600.v1.1 MD14G1011000.v1.1
prunus_persica	Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1
pyrus_communis	pycom12g01090 pycom14g00950 pycom14g00980
rosa_chinensis	RchiOBHm_Chr2g0092511 RchiOBHm_Chr3g0495761 RchiOBHm_Chr7g0199541 RchiOBHm_Chr7g0219671
rosa_laevigata	RLG00000022588
rosa_multiflora	Rmu_sc0025082.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308790 Rroxscaffold_6G00390030 Rroxscaffold_6G00405380
rosa_rugosa	Rorug03G0276400
rosa_samantha	Rh3AG323600 Rh3BG359400 Rh3CG355800 Rh3DG359000 Rh7AG179900 Rh7AG300200 Rh7CG188900 Rh7CG348000 Rh7DG182600 Rh7DG326100
rosa_wichuraiana	Rw3G028290 Rw7G015800 Rw7G027840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	168
Acc36I	ACCTGC	2 cut(s)	168, 601
AccB1I	GGYRCC	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	100
AciI	CCGC	3 cut(s)	47, 621, 970
AclWI	GGATC	1 cut(s)	935
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	304, 678
AcuI	CTGAAG	1 cut(s)	821
AcvI	CACGTG	1 cut(s)	437
AfaI	GTAC	6 cut(s)	45, 372, 570, 701, 930, 1001
AgsI	TTSAA	6 cut(s)	485, 650, 719, 821, 923, 982
AluBI	AGCT	9 cut(s)	141, 247, 402, 499, 643, 689, 796, 835, 857
AluI	AGCT	9 cut(s)	141, 247, 402, 499, 643, 689, 796, 835, 857
Alw21I	GWGCWC	2 cut(s)	37, 249
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	1 cut(s)	935
AlwNI	CAGNNNCTG	1 cut(s)	380
AoxI	GGCC	3 cut(s)	3, 106, 362
ApeKI	GCWGC	3 cut(s)	114, 689, 905
ApoI	RAATTY	2 cut(s)	304, 678
ArsI	GACNNNNNNTTYG	2 cut(s)	441, 473
Asp700I	GAANNNNTTC	1 cut(s)	930
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	843
AsuHPI	GGTGA	3 cut(s)	149, 635, 884
AvaII	GGWCC	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	249
BbrPI	CACGTG	1 cut(s)	437
Bbv12I	GWGCWC	2 cut(s)	37, 249
BbvI	GCAGC	3 cut(s)	126, 676, 892
BccI	CCATC	1 cut(s)	722
BceAI	ACGGC	3 cut(s)	135, 148, 983
BciVI	GTATCC	1 cut(s)	967
BcnI	CCSGG	1 cut(s)	843
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	1 cut(s)	219
BfuAI	ACCTGC	2 cut(s)	168, 601
BfuI	GTATCC	1 cut(s)	967
BglII	AGATCT	1 cut(s)	742
BisI	GCNGC	3 cut(s)	115, 690, 906
BlsI	GCNGC	3 cut(s)	116, 691, 907
BmcAI	AGTACT	2 cut(s)	701, 930
Bme1390I	CCNGG	1 cut(s)	843
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	2 cut(s)	123, 541
BmrFI	CCNGG	1 cut(s)	843
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	3 cut(s)	616, 622, 865
BmuI	ACTGGG	1 cut(s)	348
Bpu10I	CCTNAGC	2 cut(s)	750, 801
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	843
BsaAI	YACGTR	2 cut(s)	437, 572
BsaJI	CCNNGG	3 cut(s)	766, 868, 965
BsaWI	WCCGGW	1 cut(s)	171
Bse1I	ACTGG	2 cut(s)	343, 374
BseDI	CCNNGG	3 cut(s)	766, 868, 965
BseGI	GGATG	2 cut(s)	733, 739
BseMII	CTCAG	5 cut(s)	28, 151, 630, 659, 764
BseNI	ACTGG	2 cut(s)	343, 374
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	3 cut(s)	126, 676, 892
BshFI	GGCC	3 cut(s)	5, 108, 364
BshNI	GGYRCC	1 cut(s)	121
BsiHKAI	GWGCWC	2 cut(s)	37, 249
BsiSI	CCGG	2 cut(s)	172, 842
BslFI	GGGAC	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	461
BsmBI	CGTCTC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	151
BsmI	GAATGC	2 cut(s)	383, 919
BsnI	GGCC	3 cut(s)	5, 108, 364
Bsp1286I	GDGCHC	2 cut(s)	37, 249
Bsp1407I	TGTACA	1 cut(s)	999
Bsp143I	GATC	4 cut(s)	225, 583, 742, 940
BspACI	CCGC	3 cut(s)	47, 621, 970
BspANI	GGCC	3 cut(s)	5, 108, 364
BspCNI	CTCAG	5 cut(s)	27, 150, 631, 660, 763
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	2 cut(s)	123, 541
BspMI	ACCTGC	2 cut(s)	168, 601
BspPI	GGATC	1 cut(s)	935
BspT107I	GGYRCC	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	999
BsrI	ACTGG	2 cut(s)	343, 374
BssECI	CCNNGG	3 cut(s)	766, 868, 965
BssMI	GATC	4 cut(s)	225, 583, 742, 940
BssT1I	CCWWGG	2 cut(s)	766, 868
Bst4CI	ACNGT	5 cut(s)	10, 61, 126, 150, 206
Bst6I	CTCTTC	1 cut(s)	353
BstAUI	TGTACA	1 cut(s)	999
BstBAI	YACGTR	2 cut(s)	437, 572
BstC8I	GCNNGC	2 cut(s)	33, 798
BstDEI	CTNAG	7 cut(s)	14, 137, 388, 639, 668, 750, 801
BstDSI	CCRYGG	1 cut(s)	965
BstF5I	GGATG	2 cut(s)	733, 739
BstKTI	GATC	4 cut(s)	228, 586, 745, 943
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	4 cut(s)	225, 583, 742, 940
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 914
BstSCI	CCNGG	1 cut(s)	841
BstSNI	TACGTA	1 cut(s)	572
BstV1I	GCAGC	3 cut(s)	126, 676, 892
BstX2I	RGATCY	1 cut(s)	742
BstYI	RGATCY	1 cut(s)	742
BsuI	GTATCC	1 cut(s)	967
BsuRI	GGCC	3 cut(s)	5, 108, 364
BtgI	CCRYGG	1 cut(s)	965
BtsCI	GGATG	2 cut(s)	733, 739
BtsIMutI	CAGTG	2 cut(s)	6, 57
BveI	ACCTGC	2 cut(s)	168, 601
Cac8I	GCNNGC	2 cut(s)	33, 798
CaiI	CAGNNNCTG	1 cut(s)	380
CciI	TCATGA	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	174
CpoI	CGGWCCG	1 cut(s)	174
Csp6I	GTAC	6 cut(s)	44, 371, 569, 700, 929, 1000
CspI	CGGWCCG	1 cut(s)	174
CviAII	CATG	1 cut(s)	355
CviQI	GTAC	6 cut(s)	44, 371, 569, 700, 929, 1000
DdeI	CTNAG	7 cut(s)	14, 137, 388, 639, 668, 750, 801
DpnI	GATC	4 cut(s)	227, 585, 744, 942
DpnII	GATC	4 cut(s)	225, 583, 742, 940
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
Ecl136II	GAGCTC	1 cut(s)	247
Eco105I	TACGTA	1 cut(s)	572
Eco130I	CCWWGG	2 cut(s)	766, 868
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	821
Eco72I	CACGTG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	247
EcoT14I	CCWWGG	2 cut(s)	766, 868
EcoT22I	ATGCAT	1 cut(s)	919
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	2 cut(s)	766, 868
Esp3I	CGTCTC	1 cut(s)	461
FaeI	CATG	1 cut(s)	358
FalI	AAGNNNNNCTT	4 cut(s)	780, 812, 915, 947
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	354
FauI	CCCGC	1 cut(s)	963
FauNDI	CATATG	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	100
Fnu4HI	GCNGC	3 cut(s)	115, 690, 906
FokI	GGATG	2 cut(s)	740, 746
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	3 cut(s)	115, 690, 906
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	3 cut(s)	115, 690, 906
HaeIII	GGCC	3 cut(s)	5, 108, 364
HapII	CCGG	2 cut(s)	172, 842
Hin1II	CATG	1 cut(s)	358
HindIII	AAGCTT	3 cut(s)	400, 794, 833
HinfI	GANTC	2 cut(s)	492, 553
HpaII	CCGG	2 cut(s)	172, 842
HphI	GGTGA	3 cut(s)	149, 635, 884
Hpy166II	GTNNAC	2 cut(s)	101, 757
Hpy188I	TCNGA	3 cut(s)	17, 269, 912
Hpy188III	TCNNGA	3 cut(s)	242, 259, 355
Hpy8I	GTNNAC	2 cut(s)	101, 757
HpyAV	CCTTC	8 cut(s)	83, 93, 281, 553, 666, 782, 886, 976
HpyCH4III	ACNGT	5 cut(s)	10, 61, 126, 150, 206
HpyCH4IV	ACGT	3 cut(s)	90, 436, 571
HpyCH4V	TGCA	5 cut(s)	310, 383, 604, 635, 917
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 914
HpyF3I	CTNAG	7 cut(s)	14, 137, 388, 639, 668, 750, 801
HpySE526I	ACGT	3 cut(s)	90, 436, 571
Hsp92II	CATG	1 cut(s)	358
Kzo9I	GATC	4 cut(s)	225, 583, 742, 940
LmnI	GCTCC	2 cut(s)	607, 656
Lsp1109I	GCAGC	3 cut(s)	126, 676, 892
LweI	GCATC	3 cut(s)	616, 622, 865
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	3 cut(s)	90, 436, 571
MaeIII	GTNAC	2 cut(s)	334, 850
MalI	GATC	4 cut(s)	227, 585, 744, 942
MboI	GATC	4 cut(s)	225, 583, 742, 940
MboII	GAAGA	3 cut(s)	284, 370, 935
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	1 cut(s)	742
MhlI	GDGCHC	2 cut(s)	37, 249
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	304, 485, 599, 678, 714, 807
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	373
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	919
MroXI	GAANNNNTTC	1 cut(s)	930
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	348, 696, 900
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	2 cut(s)	172, 842
MspR9I	CCNGG	1 cut(s)	843
MunI	CAATTG	1 cut(s)	714
Mva1269I	GAATGC	2 cut(s)	383, 919
MwoI	GCNNNNNNNGC	2 cut(s)	114, 914
NciI	CCSGG	1 cut(s)	843
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	4 cut(s)	225, 583, 742, 940
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	2 cut(s)	123, 541
NmuCI	GTSAC	1 cut(s)	850
NsiI	ATGCAT	1 cut(s)	919
PagI	TCATGA	1 cut(s)	354
PaqCI	CACCTGC	1 cut(s)	168
PctI	GAATGC	2 cut(s)	383, 919
PdmI	GAANNNNTTC	1 cut(s)	930
PfeI	GAWTC	2 cut(s)	492, 553
PkrI	GCNGC	3 cut(s)	116, 691, 907
PmaCI	CACGTG	1 cut(s)	437
PmlI	CACGTG	1 cut(s)	437
Ppu21I	YACGTR	2 cut(s)	437, 572
Psp124BI	GAGCTC	1 cut(s)	249
PspCI	CACGTG	1 cut(s)	437
PspN4I	GGNNCC	2 cut(s)	123, 541
PspPI	GGNCC	1 cut(s)	174
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	742
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	6 cut(s)	45, 372, 570, 701, 930, 1001
RsaNI	GTAC	6 cut(s)	44, 371, 569, 700, 929, 1000
Rsr2I	CGGWCCG	1 cut(s)	174
RsrII	CGGWCCG	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	3 cut(s)	348, 696, 900
SatI	GCNGC	3 cut(s)	115, 690, 906
Sau3AI	GATC	4 cut(s)	225, 583, 742, 940
Sau96I	GGNCC	1 cut(s)	174
ScaI	AGTACT	2 cut(s)	701, 930
ScrFI	CCNGG	1 cut(s)	843
SduI	GDGCHC	2 cut(s)	37, 249
SfaNI	GCATC	3 cut(s)	616, 622, 865
SinI	GGWCC	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SnaBI	TACGTA	1 cut(s)	572
Sse9I	AATT	6 cut(s)	304, 485, 599, 678, 714, 807
SsiI	CCGC	3 cut(s)	47, 621, 970
SspMI	CTAG	1 cut(s)	219
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	841
StyI	CCWWGG	2 cut(s)	766, 868
TaaI	ACNGT	5 cut(s)	10, 61, 126, 150, 206
TaiI	ACGT	3 cut(s)	93, 439, 574
TaqI	TCGA	3 cut(s)	228, 241, 258
TasI	AATT	6 cut(s)	304, 485, 599, 678, 714, 807
TatI	WGTACW	3 cut(s)	699, 928, 999
TfiI	GAWTC	2 cut(s)	492, 553
Tru1I	TTAA	3 cut(s)	348, 696, 900
Tru9I	TTAA	3 cut(s)	348, 696, 900
TscAI	CASTG	2 cut(s)	13, 64
TseFI	GTSAC	1 cut(s)	850
TseI	GCWGC	3 cut(s)	114, 689, 905
Tsp45I	GTSAC	1 cut(s)	850
TspDTI	ATGAA	3 cut(s)	75, 371, 897
TspGWI	ACGGA	2 cut(s)	166, 773
TspRI	CASTG	2 cut(s)	13, 64
VpaK11BI	GGWCC	1 cut(s)	174
XapI	RAATTY	2 cut(s)	304, 678
XmiI	GTMKAC	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	930
XspI	CTAG	1 cut(s)	219
ZrmI	AGTACT	2 cut(s)	701, 930
Zsp2I	ATGCAT	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.