Rh7CG188900

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002388
Physical Location & Seq
Forward (+)
16673192 .. 16678264
5073 bp
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UTR
Exon/CDS
Intron
Rh7CG188900.1

Sequence Viewer

Length: 474 bp
ATGCAGATCCAAAGGTGCACTGGTGCTGTGGTGATAACAAGGGGCAAGTATCATCCACCAAATGCGTCAACTGATGGTGAAAAGCCATTATATCTTCATATTTCTGCAGGGGCTAATGAACAGGTACGAAGTGGTGATGCTAGTGCAACGGAGCTTTTTGAACTTGGAGTAGTGATGCTGAGGAGAAAAATTTATCCAGTTGCTACTAAGTACTTGGTTCAGGCAATTGAGAAATGGGATGGGGATGACCAAGATCTTGCTCAGGTTTACAATGCCCTTGGGGTCAGTTATGTCTGTGATAGGAAGCTTGGTGATGCCTACGAACAAAAGAAAGACTTTAAGTCCGCCCTGAATGCATTTGAAGAAGTGCTTCTTTTTTATCCTAACAACAAAGTGGGGCAACCACGGCGAGATGCTTTGAAGGAACAAGTGAAATTGTACATAGATGTCCTCGTTAAAATAAAGGAGAGATAA

Protein Analysis

157

Amino Acids

17.75

Weight (kDa)

8.44

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_12 PF23469 2 - 40 1.4e-12 KH-domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 345
AcsI RAATTY 1 cut(s) 189
AfaI GTAC 3 cut(s) 126, 212, 440
AgsI TTSAA 3 cut(s) 161, 362, 421
AhdI GACNNNNNGTC 1 cut(s) 340
AluBI AGCT 2 cut(s) 154, 307
AluI AGCT 2 cut(s) 154, 307
Alw21I GWGCWC 1 cut(s) 20
Alw44I GTGCAC 1 cut(s) 16
ApaLI GTGCAC 1 cut(s) 16
ApoI RAATTY 1 cut(s) 189
Asp700I GAANNNNTTC 1 cut(s) 369
AsuHPI GGTGA 4 cut(s) 43, 89, 146, 323
BaeGI GKGCMC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 20
BbvCI CCTCAGC 1 cut(s) 179
BccI CCATC 2 cut(s) 68, 233
BceAI ACGGC 1 cut(s) 422
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 105
BglII AGATCT 1 cut(s) 253
BmcAI AGTACT 1 cut(s) 212
BmeRI GACNNNNNGTC 1 cut(s) 340
BmsI GCATC 4 cut(s) 127, 165, 304, 403
Bpu10I CCTNAGC 2 cut(s) 179, 261
BsaJI CCNNGG 2 cut(s) 277, 404
Bse1I ACTGG 2 cut(s) 25, 197
BseDI CCNNGG 2 cut(s) 277, 404
BseGI GGATG 3 cut(s) 52, 244, 250
BseMII CTCAG 2 cut(s) 170, 275
BseNI ACTGG 2 cut(s) 25, 197
BseRI GAGGAG 1 cut(s) 196
BseSI GKGCMC 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 20
BsmI GAATGC 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 20
Bsp1407I TGTACA 1 cut(s) 438
Bsp143I GATC 2 cut(s) 6, 253
BspACI CCGC 1 cut(s) 345
BspCNI CTCAG 2 cut(s) 171, 274
BspMAI CTGCAG 1 cut(s) 109
BsrGI TGTACA 1 cut(s) 438
BsrI ACTGG 2 cut(s) 25, 197
BssECI CCNNGG 2 cut(s) 277, 404
BssMI GATC 2 cut(s) 6, 253
BssT1I CCWWGG 1 cut(s) 277
BstAUI TGTACA 1 cut(s) 438
BstDEI CTNAG 3 cut(s) 179, 207, 261
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 3 cut(s) 52, 244, 250
BstKTI GATC 2 cut(s) 9, 256
BstMBI GATC 2 cut(s) 6, 253
BstMWI GCNNNNNNNGC 2 cut(s) 353, 406
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 1 cut(s) 20
BstX2I RGATCY 2 cut(s) 6, 253
BstYI RGATCY 2 cut(s) 6, 253
BtgI CCRYGG 1 cut(s) 404
BtsCI GGATG 3 cut(s) 52, 244, 250
BtsIMutI CAGTG 1 cut(s) 18
CseI GACGC 1 cut(s) 54
Csp6I GTAC 3 cut(s) 125, 211, 439
CviJI RGCY 4 cut(s) 85, 113, 154, 307
CviKI_1 RGCY 4 cut(s) 85, 113, 154, 307
CviQI GTAC 3 cut(s) 125, 211, 439
DdeI CTNAG 3 cut(s) 179, 207, 261
DpnI GATC 2 cut(s) 8, 255
DpnII GATC 2 cut(s) 6, 253
DriI GACNNNNNGTC 1 cut(s) 340
Eam1105I GACNNNNNGTC 1 cut(s) 340
EciI GGCGGA 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 277
EcoT22I ATGCAT 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 277
FaiI YATR 4 cut(s) 91, 99, 291, 443
FalI AAGNNNNNCTT 6 cut(s) 320, 352, 354, 386, 357, 389
FokI GGATG 3 cut(s) 39, 251, 257
FspBI CTAG 1 cut(s) 141
HgaI GACGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HindIII AAGCTT 1 cut(s) 305
HphI GGTGA 4 cut(s) 43, 89, 146, 323
Hpy166II GTNNAC 3 cut(s) 18, 69, 268
Hpy8I GTNNAC 3 cut(s) 18, 69, 268
HpyAV CCTTC 1 cut(s) 415
HpyCH4V TGCA 5 cut(s) 4, 18, 107, 146, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 406
HpyF3I CTNAG 3 cut(s) 179, 207, 261
Kzo9I GATC 2 cut(s) 6, 253
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 7 cut(s) 6, 93, 107, 206, 210, 248, 362
LweI GCATC 4 cut(s) 127, 165, 304, 403
MaeI CTAG 1 cut(s) 141
MalI GATC 2 cut(s) 8, 255
MboI GATC 2 cut(s) 6, 253
MboII GAAGA 2 cut(s) 86, 374
MfeI CAATTG 1 cut(s) 225
MflI RGATCY 2 cut(s) 6, 253
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 3 cut(s) 189, 225, 434
MnlI CCTC 2 cut(s) 174, 461
Mph1103I ATGCAT 1 cut(s) 358
MroXI GAANNNNTTC 1 cut(s) 369
MseI TTAA 2 cut(s) 339, 456
MunI CAATTG 1 cut(s) 225
Mva1269I GAATGC 1 cut(s) 358
MwoI GCNNNNNNNGC 2 cut(s) 353, 406
NdeII GATC 2 cut(s) 6, 253
NsiI ATGCAT 1 cut(s) 358
PctI GAATGC 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 369
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 2 cut(s) 6, 253
RsaI GTAC 3 cut(s) 126, 212, 440
RsaNI GTAC 3 cut(s) 125, 211, 439
SaqAI TTAA 2 cut(s) 339, 456
Sau3AI GATC 2 cut(s) 6, 253
ScaI AGTACT 1 cut(s) 212
SduI GDGCHC 1 cut(s) 20
SetI ASST 5 cut(s) 17, 126, 156, 267, 309
SfaNI GCATC 4 cut(s) 127, 165, 304, 403
SfcI CTRYAG 1 cut(s) 105
Sse9I AATT 3 cut(s) 189, 225, 434
SsiI CCGC 1 cut(s) 345
SspMI CTAG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 277
TasI AATT 3 cut(s) 189, 225, 434
TatI WGTACW 2 cut(s) 210, 438
Tru1I TTAA 2 cut(s) 339, 456
Tru9I TTAA 2 cut(s) 339, 456
TscAI CASTG 1 cut(s) 25
TspDTI ATGAA 2 cut(s) 86, 132
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 1 cut(s) 25
VneI GTGCAC 1 cut(s) 16
XapI RAATTY 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 1 cut(s) 141
ZrmI AGTACT 1 cut(s) 212
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.