Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G22700 AT1G22700 AT1G22700 |
| fragaria_vesca | FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 |
| malus_domestica | MD12G1013600.v1.1 MD14G1011000.v1.1 |
| prunus_persica | Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 |
| pyrus_communis | pycom12g01090 pycom14g00950 pycom14g00980 |
| rosa_chinensis | RchiOBHm_Chr2g0092511 RchiOBHm_Chr3g0495761 RchiOBHm_Chr7g0199541 RchiOBHm_Chr7g0219671 |
| rosa_laevigata | RLG00000022588 |
| rosa_multiflora | Rmu_sc0025082.1_g000004 |
| rosa_roxburghii | Rroxscaffold_4G00308790 Rroxscaffold_6G00390030 Rroxscaffold_6G00405380 |
| rosa_rugosa | Rorug03G0276400 |
| rosa_samantha | Rh3AG323600 Rh3BG359400 Rh3CG355800 Rh3DG359000 Rh7AG179900 Rh7AG300200 Rh7CG188900 Rh7CG348000 Rh7DG182600 Rh7DG326100 |
| rosa_wichuraiana | Rw3G028290 Rw7G015800 Rw7G027840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 141 |
| AfaI | GTAC | 1 cut(s) | 164 |
| AgsI | TTSAA | 1 cut(s) | 113 |
| AluBI | AGCT | 3 cut(s) | 12, 106, 152 |
| AluI | AGCT | 3 cut(s) | 12, 106, 152 |
| Alw26I | GTCTC | 1 cut(s) | 9 |
| ApeKI | GCWGC | 2 cut(s) | 52, 152 |
| ApoI | RAATTY | 1 cut(s) | 141 |
| BbvI | GCAGC | 2 cut(s) | 39, 139 |
| BccI | CCATC | 1 cut(s) | 185 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 77, 111 |
| BcoDI | GTCTC | 1 cut(s) | 9 |
| BfaI | CTAG | 1 cut(s) | 93 |
| BglII | AGATCT | 1 cut(s) | 205 |
| BisI | GCNGC | 2 cut(s) | 53, 153 |
| BlsI | GCNGC | 2 cut(s) | 54, 154 |
| BmcAI | AGTACT | 1 cut(s) | 164 |
| BmsI | GCATC | 2 cut(s) | 79, 117 |
| Bpu10I | CCTNAGC | 1 cut(s) | 213 |
| BsaJI | CCNNGG | 1 cut(s) | 131 |
| Bse3DI | GCAATG | 1 cut(s) | 105 |
| BseDI | CCNNGG | 1 cut(s) | 131 |
| BseGI | GGATG | 2 cut(s) | 196, 202 |
| BseMI | GCAATG | 1 cut(s) | 105 |
| BseRI | GAGGAG | 1 cut(s) | 148 |
| BseXI | GCAGC | 2 cut(s) | 39, 139 |
| BsmAI | GTCTC | 1 cut(s) | 9 |
| Bsp143I | GATC | 1 cut(s) | 205 |
| BsrDI | GCAATG | 1 cut(s) | 105 |
| BssECI | CCNNGG | 1 cut(s) | 131 |
| BssMI | GATC | 1 cut(s) | 205 |
| Bst4CI | ACNGT | 1 cut(s) | 49 |
| BstC8I | GCNNGC | 2 cut(s) | 57, 61 |
| BstDEI | CTNAG | 2 cut(s) | 159, 213 |
| BstF5I | GGATG | 2 cut(s) | 196, 202 |
| BstKTI | GATC | 1 cut(s) | 208 |
| BstMAI | GTCTC | 1 cut(s) | 9 |
| BstMBI | GATC | 1 cut(s) | 205 |
| BstV1I | GCAGC | 2 cut(s) | 39, 139 |
| BstX2I | RGATCY | 1 cut(s) | 205 |
| BstYI | RGATCY | 1 cut(s) | 205 |
| BtgZI | GCGATG | 1 cut(s) | 102 |
| BtsCI | GGATG | 2 cut(s) | 196, 202 |
| Cac8I | GCNNGC | 2 cut(s) | 57, 61 |
| Csp6I | GTAC | 1 cut(s) | 163 |
| CviJI | RGCY | 5 cut(s) | 12, 44, 59, 106, 152 |
| CviKI_1 | RGCY | 5 cut(s) | 12, 44, 59, 106, 152 |
| CviQI | GTAC | 1 cut(s) | 163 |
| DdeI | CTNAG | 2 cut(s) | 159, 213 |
| DpnI | GATC | 1 cut(s) | 207 |
| DpnII | GATC | 1 cut(s) | 205 |
| Fnu4HI | GCNGC | 2 cut(s) | 53, 153 |
| FokI | GGATG | 2 cut(s) | 203, 209 |
| Fsp4HI | GCNGC | 2 cut(s) | 53, 153 |
| FspBI | CTAG | 1 cut(s) | 93 |
| GluI | GCNGC | 2 cut(s) | 53, 153 |
| HindIII | AAGCTT | 1 cut(s) | 10 |
| HpyCH4III | ACNGT | 1 cut(s) | 49 |
| HpyCH4V | TGCA | 3 cut(s) | 55, 63, 98 |
| HpyF3I | CTNAG | 2 cut(s) | 159, 213 |
| Kzo9I | GATC | 1 cut(s) | 205 |
| LmnI | GCTCC | 1 cut(s) | 103 |
| LpnPI | CCDG | 3 cut(s) | 73, 162, 200 |
| Lsp1109I | GCAGC | 2 cut(s) | 39, 139 |
| LweI | GCATC | 2 cut(s) | 79, 117 |
| MaeI | CTAG | 1 cut(s) | 93 |
| MalI | GATC | 1 cut(s) | 207 |
| MboI | GATC | 1 cut(s) | 205 |
| MfeI | CAATTG | 2 cut(s) | 64, 177 |
| MflI | RGATCY | 1 cut(s) | 205 |
| MluCI | AATT | 3 cut(s) | 64, 141, 177 |
| MnlI | CCTC | 1 cut(s) | 126 |
| MspA1I | CMGCKG | 1 cut(s) | 152 |
| MunI | CAATTG | 2 cut(s) | 64, 177 |
| NdeII | GATC | 1 cut(s) | 205 |
| NmeAIII | GCCGAG | 1 cut(s) | 156 |
| PkrI | GCNGC | 2 cut(s) | 54, 154 |
| PsuI | RGATCY | 1 cut(s) | 205 |
| PvuII | CAGCTG | 1 cut(s) | 152 |
| RsaI | GTAC | 1 cut(s) | 164 |
| RsaNI | GTAC | 1 cut(s) | 163 |
| SatI | GCNGC | 2 cut(s) | 53, 153 |
| Sau3AI | GATC | 1 cut(s) | 205 |
| ScaI | AGTACT | 1 cut(s) | 164 |
| SetI | ASST | 4 cut(s) | 14, 108, 154, 219 |
| SfaNI | GCATC | 2 cut(s) | 79, 117 |
| Sse9I | AATT | 3 cut(s) | 64, 141, 177 |
| SspMI | CTAG | 1 cut(s) | 93 |
| TaaI | ACNGT | 1 cut(s) | 49 |
| TaqI | TCGA | 1 cut(s) | 172 |
| TasI | AATT | 3 cut(s) | 64, 141, 177 |
| TatI | WGTACW | 1 cut(s) | 162 |
| TseI | GCWGC | 2 cut(s) | 52, 152 |
| XapI | RAATTY | 1 cut(s) | 141 |
| XspI | CTAG | 1 cut(s) | 93 |
| ZrmI | AGTACT | 1 cut(s) | 164 |