Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002388

Physical Location & Seq

Genomic Coordinates Forward (+)

39388814 .. 39392778

Gene Structure 3965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG348000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGATTCTAATGACTCCATATCTCAATCTGATCCCAAAGTTTCAGTCTTTTCTTTAATCACCATGTCATCACGGACACAGCCCCCATCCCCCAAATCCAAGTTTCAAGTAACGATAAACAAGATGAGCCAGATGGTGATTATTCTAGTTCAGGGGGCGGATTTAGATAGAAAGGAGCAGGTACGAAGTGGCGATGCTAGTGCAACGGAGCTTTTTGAACTTGGAGTAGTGATGCTGAGGAGAAAAATTTATCCAGCTGCTACTAAGTACTTGGTTCAGGCAATTGAGAAATGGGATGGGGATGACCAAGATCTTGCTCATGTTTACAATGCCCTTGGGGTTAGTTATGTCTGTGATAGGAAGCTTGGTGATGCCTATGAACAGAAGAAAGACTTTAAGTCCGCCCTGAATGCATTTGAAGAAGTGCTTCTTTTTTATCCTAACAACAAAGTGGCGCAACCACGGCGAGATGCTTTGCAGGAACAATTGAACTCAAACCCGGTAGTCGGAGTCGAACTCGGACCAGCAAGGCTTAGAAGACCTGGATTTCTTCGAGGCCGTGGAGCATGGATCAGCGACGACTGGGATTGGACGGCGGAGAGTAGAGCCCATGACTTCCAGCCTTGCATCGAGATCCGAGTTCTCCACCTGAGAGGTAGCTCCAACAGGAGCTTCTTAATCATCTTTAGGCAAGCCCGCAGAGAGAGGGAGGAGAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_2 TPR_8

Protein Analysis

240

Amino Acids

27.4

Weight (kDa)

8.49

Isoelectric Point (pI)

59.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22700 AT1G22700 AT1G22700
fragaria_vesca	FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740
malus_domestica	MD12G1013600.v1.1 MD14G1011000.v1.1
prunus_persica	Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1
pyrus_communis	pycom12g01090 pycom14g00950 pycom14g00980
rosa_chinensis	RchiOBHm_Chr2g0092511 RchiOBHm_Chr3g0495761 RchiOBHm_Chr7g0199541 RchiOBHm_Chr7g0219671
rosa_laevigata	RLG00000022588
rosa_multiflora	Rmu_sc0025082.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308790 Rroxscaffold_6G00390030 Rroxscaffold_6G00405380
rosa_rugosa	Rorug03G0276400
rosa_samantha	Rh3AG323600 Rh3BG359400 Rh3CG355800 Rh3DG359000 Rh7AG179900 Rh7AG300200 Rh7CG188900 Rh7CG348000 Rh7DG182600 Rh7DG326100
rosa_wichuraiana	Rw3G028290 Rw7G015800 Rw7G027840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	169
AciI	CCGC	4 cut(s)	158, 402, 596, 697
AclWI	GGATC	3 cut(s)	26, 578, 628
AcsI	RAATTY	1 cut(s)	246
AfaI	GTAC	2 cut(s)	183, 269
AfiI	CCNNNNNNNGG	1 cut(s)	506
AgsI	TTSAA	4 cut(s)	107, 218, 419, 490
AhdI	GACNNNNNGTC	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	541
AjuI	GAANNNNNNNTTGG	2 cut(s)	656, 688
AluBI	AGCT	5 cut(s)	211, 257, 364, 660, 672
AluI	AGCT	5 cut(s)	211, 257, 364, 660, 672
AlwI	GGATC	3 cut(s)	26, 578, 628
AoxI	GGCC	1 cut(s)	556
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	246
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	1 cut(s)	521
AsuC2I	CCSGG	1 cut(s)	500
AsuHPI	GGTGA	3 cut(s)	52, 148, 380
AvaII	GGWCC	1 cut(s)	521
BanII	GRGCYC	1 cut(s)	610
BbsI	GAAGAC	1 cut(s)	544
BbvCI	CCTCAGC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	3 cut(s)	94, 127, 290
BceAI	ACGGC	3 cut(s)	479, 543, 609
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	1 cut(s)	543
BcnI	CCSGG	1 cut(s)	500
BfaI	CTAG	2 cut(s)	146, 198
BfuAI	ACCTGC	1 cut(s)	169
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
BmcAI	AGTACT	1 cut(s)	269
Bme1390I	CCNGG	2 cut(s)	500, 543
Bme18I	GGWCC	1 cut(s)	521
BmeRI	GACNNNNNGTC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	521
BmrFI	CCNGG	2 cut(s)	500, 543
BmrI	ACTGGG	1 cut(s)	592
BmsI	GCATC	5 cut(s)	184, 222, 361, 460, 636
BmuI	ACTGGG	1 cut(s)	592
BpiI	GAAGAC	1 cut(s)	544
BplI	GAGNNNNNCTC	2 cut(s)	501, 533
Bpu10I	CCTNAGC	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	500
BsaJI	CCNNGG	3 cut(s)	334, 461, 559
BsaXI	ACNNNNNCTCC	1 cut(s)	704
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	3 cut(s)	334, 461, 559
BseGI	GGATG	3 cut(s)	86, 301, 307
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMII	CTCAG	2 cut(s)	227, 641
BseNI	ACTGG	1 cut(s)	587
BseRI	GAGGAG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	244
BshFI	GGCC	1 cut(s)	558
BsiSI	CCGG	1 cut(s)	500
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	1 cut(s)	558
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp143I	GATC	4 cut(s)	31, 310, 570, 633
BspACI	CCGC	4 cut(s)	158, 402, 596, 697
BspANI	GGCC	1 cut(s)	558
BspCNI	CTCAG	2 cut(s)	228, 642
BspMI	ACCTGC	1 cut(s)	169
BspPI	GGATC	3 cut(s)	26, 578, 628
BsrI	ACTGG	1 cut(s)	587
BssECI	CCNNGG	3 cut(s)	334, 461, 559
BssMI	GATC	4 cut(s)	31, 310, 570, 633
BssT1I	CCWWGG	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	543
BstC8I	GCNNGC	2 cut(s)	693, 697
BstDEI	CTNAG	4 cut(s)	236, 264, 533, 650
BstDSI	CCRYGG	2 cut(s)	461, 559
BstF5I	GGATG	3 cut(s)	86, 301, 307
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	4 cut(s)	34, 313, 573, 636
BstMBI	GATC	4 cut(s)	31, 310, 570, 633
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 463
BstNI	CCWGG	1 cut(s)	543
BstSCI	CCNGG	2 cut(s)	498, 541
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	544
BstX2I	RGATCY	2 cut(s)	310, 633
BstYI	RGATCY	2 cut(s)	310, 633
BsuRI	GGCC	1 cut(s)	558
BtgI	CCRYGG	2 cut(s)	461, 559
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	3 cut(s)	86, 301, 307
BveI	ACCTGC	1 cut(s)	169
Cac8I	GCNNGC	2 cut(s)	693, 697
CfoI	GCGC	1 cut(s)	457
Cfr13I	GGNCC	1 cut(s)	521
Csp6I	GTAC	2 cut(s)	182, 268
CviAII	CATG	4 cut(s)	64, 320, 567, 611
CviQI	GTAC	2 cut(s)	182, 268
DdeI	CTNAG	4 cut(s)	236, 264, 533, 650
DpnI	GATC	4 cut(s)	33, 312, 572, 635
DpnII	GATC	4 cut(s)	31, 310, 570, 633
DriI	GACNNNNNGTC	1 cut(s)	397
Eam1105I	GACNNNNNGTC	1 cut(s)	397
EciI	GGCGGA	3 cut(s)	173, 391, 611
Eco130I	CCWWGG	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	4 cut(s)	67, 323, 570, 614
FaiI	YATR	7 cut(s)	20, 65, 321, 348, 378, 568, 612
FalI	AAGNNNNNCTT	6 cut(s)	377, 409, 411, 443, 414, 446
FatI	CATG	4 cut(s)	63, 319, 566, 610
FauI	CCCGC	1 cut(s)	704
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	3 cut(s)	73, 308, 314
FriOI	GRGCYC	1 cut(s)	610
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	2 cut(s)	146, 198
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	558
HapII	CCGG	1 cut(s)	500
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	4 cut(s)	67, 323, 570, 614
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	3 cut(s)	5, 14, 510
HpaII	CCGG	1 cut(s)	500
HphI	GGTGA	3 cut(s)	52, 148, 380
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	4 cut(s)	31, 509, 521, 638
Hpy188III	TCNNGA	1 cut(s)	631
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	1 cut(s)	581
HpyCH4V	TGCA	4 cut(s)	203, 413, 478, 627
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 463
HpyF3I	CTNAG	4 cut(s)	236, 264, 533, 650
Hsp92II	CATG	4 cut(s)	67, 323, 570, 614
HspAI	GCGC	1 cut(s)	455
Kzo9I	GATC	4 cut(s)	31, 310, 570, 633
LmnI	GCTCC	5 cut(s)	175, 208, 563, 665, 669
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	5 cut(s)	184, 222, 361, 460, 636
MaeI	CTAG	2 cut(s)	146, 198
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	4 cut(s)	33, 312, 572, 635
MboI	GATC	4 cut(s)	31, 310, 570, 633
MboII	GAAGA	4 cut(s)	397, 431, 542, 549
MfeI	CAATTG	2 cut(s)	282, 485
MflI	RGATCY	2 cut(s)	310, 633
MhlI	GDGCHC	1 cut(s)	610
MluCI	AATT	3 cut(s)	246, 282, 485
MlyI	GAGTC	2 cut(s)	8, 519
MmeI	TCCRAC	2 cut(s)	487, 687
MnlI	CCTC	5 cut(s)	231, 548, 647, 699, 703
Mph1103I	ATGCAT	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	3 cut(s)	56, 396, 677
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	1 cut(s)	500
MspR9I	CCNGG	2 cut(s)	500, 543
MunI	CAATTG	2 cut(s)	282, 485
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	543
MwoI	GCNNNNNNNGC	2 cut(s)	410, 463
NciI	CCSGG	1 cut(s)	500
NdeII	GATC	4 cut(s)	31, 310, 570, 633
NlaIII	CATG	4 cut(s)	67, 323, 570, 614
NsiI	ATGCAT	1 cut(s)	415
PctI	GAATGC	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	2 cut(s)	8, 518
PpsI	GAGTC	2 cut(s)	8, 518
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspPI	GGNCC	1 cut(s)	521
PsuI	RGATCY	2 cut(s)	310, 633
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	183, 269
RsaNI	GTAC	2 cut(s)	182, 268
SaqAI	TTAA	3 cut(s)	56, 396, 677
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	4 cut(s)	31, 310, 570, 633
Sau96I	GGNCC	1 cut(s)	521
ScaI	AGTACT	1 cut(s)	269
SchI	GAGTC	2 cut(s)	8, 519
ScrFI	CCNGG	2 cut(s)	500, 543
SduI	GDGCHC	1 cut(s)	610
SetI	ASST	9 cut(s)	183, 213, 259, 366, 544, 651, 658, 662, 674
SfaNI	GCATC	5 cut(s)	184, 222, 361, 460, 636
SinI	GGWCC	1 cut(s)	521
Sse9I	AATT	3 cut(s)	246, 282, 485
SsiI	CCGC	4 cut(s)	158, 402, 596, 697
SspMI	CTAG	2 cut(s)	146, 198
StyD4I	CCNGG	2 cut(s)	498, 541
StyI	CCWWGG	1 cut(s)	334
TaqI	TCGA	3 cut(s)	513, 553, 630
TasI	AATT	3 cut(s)	246, 282, 485
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	3 cut(s)	56, 396, 677
Tru9I	TTAA	3 cut(s)	56, 396, 677
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	393
TspGWI	ACGGA	2 cut(s)	88, 221
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	2 cut(s)	146, 198
ZrmI	AGTACT	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.