Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002388

Physical Location & Seq

Genomic Coordinates Reverse (-)

6003117 .. 6005867

Gene Structure 2751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46762

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCATTATTTTTGTGGCGATGCTAGTGCAACGGAGCTTTTTGAACTTGGAGTAGTGATGCTGAGGAGAAAAATTTATCCAGCTGCTACTAAGTACTTGGTTCAGGCAATTGAGAAATGGGATGGGGATGACCAAGATCTTGCTCAGTTAGCTACTGAAGGAAAAAAGAAATATCAATTGGAGAAATTTGTTCATCTAGTCATTTGTGTTTACAATGCCCTTGGGGTCAGTTGTGTCCGTGATAGGAAGCTTGGTGATGCATATGAACAGAAGAAAGACTTTAAGTCCGCCCTGAATACATTTGAAGAAGTGCTTCTTTTTTATTCTAACAACAAAGTGGCGCAACCACGGCGAGATGCTTTGAAGGAACAAGTGAAATTGTACATAGATGTCCTCGTTAAAACAAATGAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_2 TPR_8

Protein Analysis

138

Amino Acids

15.96

Weight (kDa)

8.35

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22700 AT1G22700 AT1G22700
fragaria_vesca	FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740
malus_domestica	MD12G1013600.v1.1 MD14G1011000.v1.1
prunus_persica	Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1
pyrus_communis	pycom12g01090 pycom14g00950 pycom14g00980
rosa_chinensis	RchiOBHm_Chr2g0092511 RchiOBHm_Chr3g0495761 RchiOBHm_Chr7g0199541 RchiOBHm_Chr7g0219671
rosa_laevigata	RLG00000022588
rosa_multiflora	Rmu_sc0025082.1_g000004
rosa_roxburghii	Rroxscaffold_4G00308790 Rroxscaffold_6G00390030 Rroxscaffold_6G00405380
rosa_rugosa	Rorug03G0276400
rosa_samantha	Rh3AG323600 Rh3BG359400 Rh3CG355800 Rh3DG359000 Rh7AG179900 Rh7AG300200 Rh7CG188900 Rh7CG348000 Rh7DG182600 Rh7DG326100
rosa_wichuraiana	Rw3G028290 Rw7G015800 Rw7G027840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	72, 185
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	95, 383
AgsI	TTSAA	3 cut(s)	44, 305, 364
AhdI	GACNNNNNGTC	1 cut(s)	283
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	4 cut(s)	37, 83, 152, 250
AluI	AGCT	4 cut(s)	37, 83, 152, 250
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	2 cut(s)	72, 185
Asp700I	GAANNNNTTC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	266
BbvCI	CCTCAGC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	365
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BfaI	CTAG	2 cut(s)	24, 197
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BmcAI	AGTACT	1 cut(s)	95
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmsI	GCATC	4 cut(s)	10, 48, 247, 346
Bpu10I	CCTNAGC	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	220, 347
BseDI	CCNNGG	2 cut(s)	220, 347
BseGI	GGATG	2 cut(s)	127, 133
BseMII	CTCAG	2 cut(s)	53, 158
BseRI	GAGGAG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	70
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	1 cut(s)	288
BspCNI	CTCAG	2 cut(s)	54, 157
BsrGI	TGTACA	1 cut(s)	381
BssECI	CCNNGG	2 cut(s)	220, 347
BssMI	GATC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	220
BstAUI	TGTACA	1 cut(s)	381
BstDEI	CTNAG	3 cut(s)	62, 90, 144
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	2 cut(s)	127, 133
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 349
BstV1I	GCAGC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BtgI	CCRYGG	1 cut(s)	347
BtgZI	GCGATG	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	127, 133
CfoI	GCGC	1 cut(s)	343
Csp6I	GTAC	2 cut(s)	94, 382
CviJI	RGCY	4 cut(s)	37, 83, 152, 250
CviKI_1	RGCY	4 cut(s)	37, 83, 152, 250
CviQI	GTAC	2 cut(s)	94, 382
DdeI	CTNAG	3 cut(s)	62, 90, 144
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
DriI	GACNNNNNGTC	1 cut(s)	283
Eam1105I	GACNNNNNGTC	1 cut(s)	283
EciI	GGCGGA	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	220
EcoT22I	ATGCAT	2 cut(s)	6, 262
ErhI	CCWWGG	1 cut(s)	220
FaiI	YATR	3 cut(s)	262, 264, 386
FalI	AAGNNNNNCTT	6 cut(s)	263, 295, 297, 329, 300, 332
FauNDI	CATATG	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	2 cut(s)	134, 140
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	2 cut(s)	24, 197
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	1 cut(s)	84
HhaI	GCGC	1 cut(s)	343
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HindIII	AAGCTT	1 cut(s)	248
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	152, 358
HpyCH4V	TGCA	3 cut(s)	4, 29, 260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 349
HpyF3I	CTNAG	3 cut(s)	62, 90, 144
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	3 cut(s)	89, 93, 305
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	4 cut(s)	10, 48, 247, 346
MaeI	CTAG	2 cut(s)	24, 197
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	2 cut(s)	283, 317
MfeI	CAATTG	2 cut(s)	108, 176
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	5 cut(s)	72, 108, 176, 185, 377
MnlI	CCTC	2 cut(s)	57, 404
Mph1103I	ATGCAT	2 cut(s)	6, 262
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	2 cut(s)	282, 399
MspA1I	CMGCKG	1 cut(s)	83
MunI	CAATTG	2 cut(s)	108, 176
MwoI	GCNNNNNNNGC	2 cut(s)	149, 349
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	1 cut(s)	136
NsiI	ATGCAT	2 cut(s)	6, 262
PdmI	GAANNNNTTC	1 cut(s)	312
PkrI	GCNGC	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	2 cut(s)	95, 383
RsaNI	GTAC	2 cut(s)	94, 382
SaqAI	TTAA	2 cut(s)	282, 399
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	136
ScaI	AGTACT	1 cut(s)	95
SetI	ASST	4 cut(s)	39, 85, 154, 252
SfaNI	GCATC	4 cut(s)	10, 48, 247, 346
Sse9I	AATT	5 cut(s)	72, 108, 176, 185, 377
SsiI	CCGC	1 cut(s)	288
SspMI	CTAG	2 cut(s)	24, 197
StyI	CCWWGG	1 cut(s)	220
TasI	AATT	5 cut(s)	72, 108, 176, 185, 377
TatI	WGTACW	2 cut(s)	93, 381
Tru1I	TTAA	2 cut(s)	282, 399
Tru9I	TTAA	2 cut(s)	282, 399
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	182, 279
TspGWI	ACGGA	2 cut(s)	47, 227
XapI	RAATTY	2 cut(s)	72, 185
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	2 cut(s)	24, 197
ZrmI	AGTACT	1 cut(s)	95
Zsp2I	ATGCAT	2 cut(s)	6, 262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.