Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G22700 AT1G22700 AT1G22700 |
| fragaria_vesca | FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 FvH4_1g29740 |
| malus_domestica | MD12G1013600.v1.1 MD14G1011000.v1.1 |
| prunus_persica | Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 Prupe.7G018000_v2.0.a1 |
| pyrus_communis | pycom12g01090 pycom14g00950 pycom14g00980 |
| rosa_chinensis | RchiOBHm_Chr2g0092511 RchiOBHm_Chr3g0495761 RchiOBHm_Chr7g0199541 RchiOBHm_Chr7g0219671 |
| rosa_laevigata | RLG00000022588 |
| rosa_multiflora | Rmu_sc0025082.1_g000004 |
| rosa_roxburghii | Rroxscaffold_4G00308790 Rroxscaffold_6G00390030 Rroxscaffold_6G00405380 |
| rosa_rugosa | Rorug03G0276400 |
| rosa_samantha | Rh3AG323600 Rh3BG359400 Rh3CG355800 Rh3DG359000 Rh7AG179900 Rh7AG300200 Rh7CG188900 Rh7CG348000 Rh7DG182600 Rh7DG326100 |
| rosa_wichuraiana | Rw3G028290 Rw7G015800 Rw7G027840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 46 |
| AccBSI | CCGCTC | 1 cut(s) | 35 |
| AciI | CCGC | 1 cut(s) | 35 |
| AcsI | RAATTY | 1 cut(s) | 123 |
| AfaI | GTAC | 2 cut(s) | 60, 146 |
| AgsI | TTSAA | 1 cut(s) | 95 |
| AluBI | AGCT | 3 cut(s) | 88, 134, 241 |
| AluI | AGCT | 3 cut(s) | 88, 134, 241 |
| ApeKI | GCWGC | 1 cut(s) | 134 |
| ApoI | RAATTY | 1 cut(s) | 123 |
| AsuHPI | GGTGA | 2 cut(s) | 25, 80 |
| BbvCI | CCTCAGC | 1 cut(s) | 113 |
| BbvI | GCAGC | 1 cut(s) | 121 |
| BccI | CCATC | 2 cut(s) | 4, 167 |
| BfaI | CTAG | 3 cut(s) | 23, 75, 131 |
| BfuAI | ACCTGC | 1 cut(s) | 46 |
| BglII | AGATCT | 1 cut(s) | 187 |
| BisI | GCNGC | 1 cut(s) | 135 |
| BlsI | GCNGC | 1 cut(s) | 136 |
| BmcAI | AGTACT | 1 cut(s) | 146 |
| BmsI | GCATC | 2 cut(s) | 61, 99 |
| Bpu10I | CCTNAGC | 2 cut(s) | 113, 195 |
| BsaJI | CCNNGG | 1 cut(s) | 211 |
| BseDI | CCNNGG | 1 cut(s) | 211 |
| BseGI | GGATG | 2 cut(s) | 178, 184 |
| BseMII | CTCAG | 2 cut(s) | 104, 209 |
| BseRI | GAGGAG | 1 cut(s) | 130 |
| BseXI | GCAGC | 1 cut(s) | 121 |
| Bsp143I | GATC | 1 cut(s) | 187 |
| BspACI | CCGC | 1 cut(s) | 35 |
| BspCNI | CTCAG | 2 cut(s) | 105, 208 |
| BspMI | ACCTGC | 1 cut(s) | 46 |
| BsrBI | CCGCTC | 1 cut(s) | 35 |
| BssECI | CCNNGG | 1 cut(s) | 211 |
| BssMI | GATC | 1 cut(s) | 187 |
| BssT1I | CCWWGG | 1 cut(s) | 211 |
| BstDEI | CTNAG | 3 cut(s) | 113, 141, 195 |
| BstF5I | GGATG | 2 cut(s) | 178, 184 |
| BstKTI | GATC | 1 cut(s) | 190 |
| BstMBI | GATC | 1 cut(s) | 187 |
| BstV1I | GCAGC | 1 cut(s) | 121 |
| BstX2I | RGATCY | 1 cut(s) | 187 |
| BstYI | RGATCY | 1 cut(s) | 187 |
| BtsCI | GGATG | 2 cut(s) | 178, 184 |
| BveI | ACCTGC | 1 cut(s) | 46 |
| Csp6I | GTAC | 2 cut(s) | 59, 145 |
| CviJI | RGCY | 4 cut(s) | 6, 88, 134, 241 |
| CviKI_1 | RGCY | 4 cut(s) | 6, 88, 134, 241 |
| CviQI | GTAC | 2 cut(s) | 59, 145 |
| DdeI | CTNAG | 3 cut(s) | 113, 141, 195 |
| DpnI | GATC | 1 cut(s) | 189 |
| DpnII | GATC | 1 cut(s) | 187 |
| Eco130I | CCWWGG | 1 cut(s) | 211 |
| EcoT14I | CCWWGG | 1 cut(s) | 211 |
| ErhI | CCWWGG | 1 cut(s) | 211 |
| FaiI | YATR | 2 cut(s) | 225, 255 |
| Fnu4HI | GCNGC | 1 cut(s) | 135 |
| FokI | GGATG | 2 cut(s) | 185, 191 |
| Fsp4HI | GCNGC | 1 cut(s) | 135 |
| FspBI | CTAG | 3 cut(s) | 23, 75, 131 |
| GluI | GCNGC | 1 cut(s) | 135 |
| HindIII | AAGCTT | 1 cut(s) | 239 |
| HphI | GGTGA | 2 cut(s) | 25, 80 |
| Hpy166II | GTNNAC | 1 cut(s) | 202 |
| Hpy8I | GTNNAC | 1 cut(s) | 202 |
| HpyCH4V | TGCA | 1 cut(s) | 80 |
| HpyF3I | CTNAG | 3 cut(s) | 113, 141, 195 |
| Kzo9I | GATC | 1 cut(s) | 187 |
| LmnI | GCTCC | 2 cut(s) | 32, 52 |
| LpnPI | CCDG | 5 cut(s) | 14, 20, 41, 140, 182 |
| Lsp1109I | GCAGC | 1 cut(s) | 121 |
| LweI | GCATC | 2 cut(s) | 61, 99 |
| MaeI | CTAG | 3 cut(s) | 23, 75, 131 |
| MalI | GATC | 1 cut(s) | 189 |
| MbiI | CCGCTC | 1 cut(s) | 35 |
| MboI | GATC | 1 cut(s) | 187 |
| MfeI | CAATTG | 1 cut(s) | 159 |
| MflI | RGATCY | 1 cut(s) | 187 |
| MluCI | AATT | 2 cut(s) | 123, 159 |
| MnlI | CCTC | 1 cut(s) | 108 |
| MunI | CAATTG | 1 cut(s) | 159 |
| NdeII | GATC | 1 cut(s) | 187 |
| PkrI | GCNGC | 1 cut(s) | 136 |
| PsuI | RGATCY | 1 cut(s) | 187 |
| RsaI | GTAC | 2 cut(s) | 60, 146 |
| RsaNI | GTAC | 2 cut(s) | 59, 145 |
| SatI | GCNGC | 1 cut(s) | 135 |
| Sau3AI | GATC | 1 cut(s) | 187 |
| ScaI | AGTACT | 1 cut(s) | 146 |
| SetI | ASST | 5 cut(s) | 60, 90, 136, 201, 243 |
| SfaNI | GCATC | 2 cut(s) | 61, 99 |
| Sse9I | AATT | 2 cut(s) | 123, 159 |
| SsiI | CCGC | 1 cut(s) | 35 |
| SspMI | CTAG | 3 cut(s) | 23, 75, 131 |
| StyI | CCWWGG | 1 cut(s) | 211 |
| TasI | AATT | 2 cut(s) | 123, 159 |
| TatI | WGTACW | 1 cut(s) | 144 |
| TseI | GCWGC | 1 cut(s) | 134 |
| XapI | RAATTY | 1 cut(s) | 123 |
| XspI | CTAG | 3 cut(s) | 23, 75, 131 |
| ZrmI | AGTACT | 1 cut(s) | 146 |