Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002636

Physical Location & Seq

Genomic Coordinates Reverse (-)

8297241 .. 8302651

Gene Structure 5411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGATGGAATGTACAATTTCCATTCGGCCGGTGATTATTCAGATAAGTCGGTTCTGATGATGTCACCGGAGAGTCTCATGTTTCCTTCCGATTACCAAGCTTTGCTATGTTCCTCCGCCGGTGAAAATCGTGTCTCTGATGTTTTCGGATCCGACGAGCTACTCTCAGTAGCCGTCTCCGCTTTGTCGTCGGAGGCGGCTTCGATCGCTCCGGAGATCCGAAGAAATGATGATAACGTTTCTCTAACTGTCATCAAAGCTAAAATCGCTTGTCATCCTTCGTATCCTCGCTTACTTCAAGCTTACATCGATTGCCAAAAGGTCGGAGCACCACCGGAGATAGCGTGTTTACTAGAGGAGATTCAACGGGAGAGTGATGTTTATAAGCAAGAGGTTGTTCCTTCTTCTTGCTTTGGAGCTGATCCTGAGCTTGATGAATTTATGGAAACGTACTGCGATATATTAGTGAAATACAAATCGGATCTAGCAAGACCGTTTGACGAGGCAACGTGTTTCTTGAACAAGATTGAGATGCAGCTACGGAACCTATGTACTGGTGTCGAGTCTGCCAGGGGAGTTTCTGAGGATGGTGTAATATCATCTGACGAGGAACTGAGTGGAGGTGATCATGAGGTAGCAGAGGATGGGAGACAAAGATGTGAAGACCGGGACCTCAAAGATAGGTTGCTACGCAAATTTGGAAGCCGTATTAGTACTTTAAAGCTTGAGTTCTCAAAGAAGAAGAAGAAAGGAAAGTTACCAAGAGAAGCAAGACAAGCTCTTCTTGATTGGTGGAATCTCCATTATAAGTGGCCTTACCCTACTGAAGGAGATAAGATAGCATTAGCTGATGCAACGGGGTTAGACCAAAAACAAATCAACAATTGGTTTATAAACCAAAGGAAACGTCATTGGAAGCCATCAGAGAATATGCCTTTCGCTATGATGGATGATTCTAGTGGATCATTCTTTACCGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010073 GO:0010093 GO:0010094 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

327

Amino Acids

36.93

Weight (kDa)

4.89

Isoelectric Point (pI)

53.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	85 - 128	1.3e-20	KNOX1 domain
KNOX2	PF03791	140 - 186	1.1e-24	KNOX2 domain
ELK	PF03789	226 - 247	1.6e-07	ELK domain
Homeobox_KN	PF05920	266 - 305	1.2e-18	Homeobox KN domain
Homeodomain	PF00046	273 - 306	5.7e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23380 AT1G23380 AT1G70510 AT1G70510
fragaria_vesca	FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_5g05530 FvH4_5g05530
malus_domestica	MD06G1171700.v1.1 MD13G1095800.v1.1 MD14G1177200.v1.1 MD16G1097200.v1.1
prunus_persica	Prupe.1G249600_v2.0.a1 Prupe.5G171100_v2.0.a1
pyrus_communis	pycom06g15280 pycom13g08340 pycom14g14800 pycom16g08280
rosa_chinensis	RchiOBHm_Chr4g0433571 RchiOBHm_Chr7g0193251
rosa_laevigata	RLG00000004283 RLG00000006743
rosa_multiflora	Rmu_sc0017266.1_g000003
rosa_roxburghii	Rroxscaffold_3G00262250 Rroxscaffold_5G00375060
rosa_rugosa	Rorug04G0269800 Rorug07G0008500 Rorug07G0008600
rosa_samantha	Rh4AG324700 Rh4BG332400 Rh4CG347700 Rh4DG328800 Rh7AG134100 Rh7BG135100 Rh7CG138100 Rh7DG136100
rosa_wichuraiana	Rw4G028100 Rw7G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	384, 807, 893
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	3 cut(s)	117, 180, 197
AclI	AACGTT	1 cut(s)	237
AclWI	GGATC	6 cut(s)	144, 157, 211, 416, 489, 970
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	2 cut(s)	437, 695
AcuI	CTGAAG	1 cut(s)	846
AfaI	GTAC	4 cut(s)	14, 452, 553, 715
AfiI	CCNNNNNNNGG	1 cut(s)	827
AflIII	ACRYGT	1 cut(s)	509
AgsI	TTSAA	3 cut(s)	299, 365, 520
AjnI	CCWGG	1 cut(s)	569
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	4 cut(s)	80, 139, 181, 643
AlwI	GGATC	6 cut(s)	144, 157, 211, 416, 489, 970
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	2 cut(s)	27, 812
ApeKI	GCWGC	1 cut(s)	535
ApoI	RAATTY	2 cut(s)	437, 695
ArsI	GACNNNNNNTTYG	2 cut(s)	892, 924
AspS9I	GGNCC	1 cut(s)	670
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	4 cut(s)	44, 57, 134, 635
AvaII	GGWCC	1 cut(s)	670
BamHI	GGATCC	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	4 cut(s)	581, 638, 928, 940
BceAI	ACGGC	2 cut(s)	158, 690
BciT130I	CCWGG	1 cut(s)	571
BciVI	GTATCC	1 cut(s)	294
BclI	TGATCA	1 cut(s)	625
BcnI	CCSGG	1 cut(s)	668
BcoDI	GTCTC	4 cut(s)	80, 139, 181, 643
BfaI	CTAG	3 cut(s)	353, 485, 957
BfuI	GTATCC	1 cut(s)	294
BisI	GCNGC	2 cut(s)	198, 536
BlsI	GCNGC	2 cut(s)	199, 537
BmcAI	AGTACT	1 cut(s)	715
Bme1390I	CCNGG	2 cut(s)	571, 668
Bme18I	GGWCC	1 cut(s)	670
BmgT120I	GGNCC	1 cut(s)	670
BmiI	GGNNCC	3 cut(s)	151, 545, 671
BmrFI	CCNGG	2 cut(s)	571, 668
BmsI	GCATC	2 cut(s)	522, 841
BpiI	GAAGAC	1 cut(s)	669
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
Bpu10I	CCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	746
BpuMI	CCSGG	1 cut(s)	668
Bsa29I	ATCGAT	1 cut(s)	309
BsaJI	CCNNGG	2 cut(s)	570, 975
BsaWI	WCCGGW	3 cut(s)	67, 211, 334
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	827
Bse118I	RCCGGY	2 cut(s)	29, 119
Bse1I	ACTGG	1 cut(s)	559
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	571
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	570, 975
BseGI	GGATG	5 cut(s)	10, 274, 592, 649, 955
BseLI	CCNNNNNNNGG	1 cut(s)	827
BseMII	CTCAG	4 cut(s)	180, 417, 573, 605
BseNI	ACTGG	1 cut(s)	559
BseRI	GAGGAG	1 cut(s)	371
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	547
Bsh1285I	CGRYCG	2 cut(s)	30, 207
BshFI	GGCC	2 cut(s)	29, 814
BshVI	ATCGAT	1 cut(s)	309
BsiEI	CGRYCG	2 cut(s)	30, 207
BsiHKAI	GWGCWC	1 cut(s)	331
BsiSI	CCGG	6 cut(s)	30, 68, 120, 212, 335, 667
BslFI	GGGAC	1 cut(s)	683
BslI	CCNNNNNNNGG	1 cut(s)	827
BsmAI	GTCTC	4 cut(s)	80, 139, 181, 643
BsmBI	CGTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	683
BsnI	GGCC	2 cut(s)	29, 814
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp13I	TCCGGA	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	7 cut(s)	149, 204, 216, 421, 481, 625, 962
BspACI	CCGC	3 cut(s)	117, 180, 197
BspANI	GGCC	2 cut(s)	29, 814
BspCNI	CTCAG	4 cut(s)	179, 418, 574, 606
BspDI	ATCGAT	1 cut(s)	309
BspEI	TCCGGA	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	3 cut(s)	151, 545, 671
BspPI	GGATC	6 cut(s)	144, 157, 211, 416, 489, 970
BspQI	GCTCTTC	1 cut(s)	786
BsrFI	RCCGGY	2 cut(s)	29, 119
BsrGI	TGTACA	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	559
BssAI	RCCGGY	2 cut(s)	29, 119
BssECI	CCNNGG	2 cut(s)	570, 975
BssMI	GATC	7 cut(s)	149, 204, 216, 421, 481, 625, 962
Bst2UI	CCWGG	1 cut(s)	571
Bst4CI	ACNGT	2 cut(s)	250, 495
Bst6I	CTCTTC	1 cut(s)	786
BstAUI	TGTACA	1 cut(s)	12
BstDEI	CTNAG	4 cut(s)	166, 426, 582, 614
BstENI	CCTNNNNNAGG	1 cut(s)	825
BstF5I	GGATG	5 cut(s)	10, 274, 592, 649, 955
BstKTI	GATC	7 cut(s)	152, 207, 219, 424, 484, 628, 965
BstMAI	GTCTC	4 cut(s)	80, 139, 181, 643
BstMBI	GATC	7 cut(s)	149, 204, 216, 421, 481, 625, 962
BstMCI	CGRYCG	2 cut(s)	30, 207
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 206, 266, 776
BstNI	CCWGG	1 cut(s)	571
BstSCI	CCNGG	2 cut(s)	569, 666
BstV1I	GCAGC	1 cut(s)	547
BstV2I	GAAGAC	1 cut(s)	669
BstX2I	RGATCY	3 cut(s)	149, 216, 481
BstYI	RGATCY	3 cut(s)	149, 216, 481
BstZI	CGGCCG	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	29, 814
BsuTUI	ATCGAT	1 cut(s)	309
BtsCI	GGATG	5 cut(s)	10, 274, 592, 649, 955
CciI	TCATGA	1 cut(s)	628
Cfr10I	RCCGGY	2 cut(s)	29, 119
Cfr13I	GGNCC	1 cut(s)	670
ClaI	ATCGAT	1 cut(s)	309
Csp6I	GTAC	4 cut(s)	13, 451, 552, 714
CviAII	CATG	2 cut(s)	79, 629
CviQI	GTAC	4 cut(s)	13, 451, 552, 714
DdeI	CTNAG	4 cut(s)	166, 426, 582, 614
DpnI	GATC	7 cut(s)	151, 206, 218, 423, 483, 627, 964
DpnII	GATC	7 cut(s)	149, 204, 216, 421, 481, 625, 962
DraI	TTTAAA	1 cut(s)	720
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
EciI	GGCGGA	1 cut(s)	106
EclXI	CGGCCG	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	670
Eco52I	CGGCCG	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	846
EcoNI	CCTNNNNNAGG	1 cut(s)	825
EcoO109I	RGGNCCY	1 cut(s)	670
EcoRII	CCWGG	1 cut(s)	569
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	2 cut(s)	82, 632
FalI	AAGNNNNNCTT	2 cut(s)	768, 800
FaqI	GGGAC	1 cut(s)	683
FatI	CATG	2 cut(s)	78, 628
FbaI	TGATCA	1 cut(s)	625
Fnu4HI	GCNGC	2 cut(s)	198, 536
FokI	GGATG	5 cut(s)	17, 261, 599, 656, 962
Fsp4HI	GCNGC	2 cut(s)	198, 536
FspBI	CTAG	3 cut(s)	353, 485, 957
GluI	GCNGC	2 cut(s)	198, 536
HaeIII	GGCC	2 cut(s)	29, 814
HapII	CCGG	6 cut(s)	30, 68, 120, 212, 335, 667
Hin1II	CATG	2 cut(s)	82, 632
HindIII	AAGCTT	3 cut(s)	99, 300, 722
HinfI	GANTC	5 cut(s)	73, 361, 563, 796, 953
HpaII	CCGG	6 cut(s)	30, 68, 120, 212, 335, 667
HphI	GGTGA	4 cut(s)	44, 57, 134, 635
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188III	TCNNGA	5 cut(s)	212, 425, 517, 629, 785
Hpy8I	GTNNAC	1 cut(s)	350
Hpy99I	CGWCG	2 cut(s)	158, 193
HpyAV	CCTTC	4 cut(s)	96, 288, 411, 821
HpyCH4III	ACNGT	2 cut(s)	250, 495
HpyCH4IV	ACGT	4 cut(s)	237, 449, 509, 907
HpyCH4V	TGCA	2 cut(s)	535, 854
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 206, 266, 776
HpyF3I	CTNAG	4 cut(s)	166, 426, 582, 614
HpySE526I	ACGT	4 cut(s)	237, 449, 509, 907
Hsp92II	CATG	2 cut(s)	82, 632
Kpn2I	TCCGGA	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	7 cut(s)	149, 204, 216, 421, 481, 625, 962
LguI	GCTCTTC	1 cut(s)	786
LmnI	GCTCC	3 cut(s)	214, 326, 416
Lsp1109I	GCAGC	1 cut(s)	547
LweI	GCATC	2 cut(s)	522, 841
MaeI	CTAG	3 cut(s)	353, 485, 957
MaeII	ACGT	4 cut(s)	237, 449, 509, 907
MaeIII	GTNAC	2 cut(s)	63, 756
MalI	GATC	7 cut(s)	151, 206, 218, 423, 483, 627, 964
MboI	GATC	7 cut(s)	149, 204, 216, 421, 481, 625, 962
MboII	GAAGA	7 cut(s)	234, 396, 674, 751, 754, 757, 773
MfeI	CAATTG	1 cut(s)	883
MflI	RGATCY	3 cut(s)	149, 216, 481
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	4 cut(s)	16, 437, 695, 883
MlyI	GAGTC	2 cut(s)	82, 572
MmeI	TCCRAC	3 cut(s)	171, 177, 304
MroI	TCCGGA	1 cut(s)	211
MseI	TTAA	1 cut(s)	719
MspI	CCGG	6 cut(s)	30, 68, 120, 212, 335, 667
MspR9I	CCNGG	2 cut(s)	571, 668
MunI	CAATTG	1 cut(s)	883
MvaI	CCWGG	1 cut(s)	571
MwoI	GCNNNNNNNGC	4 cut(s)	179, 206, 266, 776
NciI	CCSGG	1 cut(s)	668
NdeII	GATC	7 cut(s)	149, 204, 216, 421, 481, 625, 962
NlaIII	CATG	2 cut(s)	82, 632
NlaIV	GGNNCC	3 cut(s)	151, 545, 671
NmuCI	GTSAC	1 cut(s)	63
PagI	TCATGA	1 cut(s)	628
PciSI	GCTCTTC	1 cut(s)	786
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	3 cut(s)	361, 796, 953
PkrI	GCNGC	2 cut(s)	199, 537
Ple19I	CGATCG	1 cut(s)	207
PleI	GAGTC	2 cut(s)	81, 571
PpsI	GAGTC	2 cut(s)	81, 571
PpuMI	RGGWCCY	1 cut(s)	670
PsiI	TTATAA	3 cut(s)	384, 807, 893
Psp1406I	AACGTT	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	670
Psp6I	CCWGG	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	569
PspN4I	GGNNCC	3 cut(s)	151, 545, 671
PspPI	GGNCC	1 cut(s)	670
PspPPI	RGGWCCY	1 cut(s)	670
PsuI	RGATCY	3 cut(s)	149, 216, 481
PvuI	CGATCG	1 cut(s)	207
RsaI	GTAC	4 cut(s)	14, 452, 553, 715
RsaNI	GTAC	4 cut(s)	13, 451, 552, 714
SapI	GCTCTTC	1 cut(s)	786
SaqAI	TTAA	1 cut(s)	719
SatI	GCNGC	2 cut(s)	198, 536
Sau3AI	GATC	7 cut(s)	149, 204, 216, 421, 481, 625, 962
Sau96I	GGNCC	1 cut(s)	670
ScaI	AGTACT	1 cut(s)	715
SchI	GAGTC	2 cut(s)	82, 572
ScrFI	CCNGG	2 cut(s)	571, 668
SduI	GDGCHC	1 cut(s)	331
SfaNI	GCATC	2 cut(s)	522, 841
SgrAI	CRCCGGYG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	670
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
Sse9I	AATT	4 cut(s)	16, 437, 695, 883
SsiI	CCGC	3 cut(s)	117, 180, 197
SspMI	CTAG	3 cut(s)	353, 485, 957
StyD4I	CCNGG	2 cut(s)	569, 666
TaaI	ACNGT	2 cut(s)	250, 495
TaiI	ACGT	4 cut(s)	240, 452, 512, 910
TaqI	TCGA	3 cut(s)	203, 309, 561
TasI	AATT	4 cut(s)	16, 437, 695, 883
TatI	WGTACW	3 cut(s)	12, 551, 713
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	3 cut(s)	361, 796, 953
Tru1I	TTAA	1 cut(s)	719
Tru9I	TTAA	1 cut(s)	719
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	1 cut(s)	535
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	450
TspGWI	ACGGA	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	670
XagI	CCTNNNNNAGG	1 cut(s)	825
XapI	RAATTY	2 cut(s)	437, 695
XspI	CTAG	3 cut(s)	353, 485, 957
ZrmI	AGTACT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.