Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002636

Physical Location & Seq

Genomic Coordinates Forward (+)

709664 .. 712183

Gene Structure 2520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0008500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAAGTTCCGGTACGCCATGGTGTGCTCGTCCAACCAGAACCGGAGCATGGAGGCTCACGCGCTCCTCAAGCGTCAAGGCTTCGACGTCTCGTCGTACGGCACTGGATCCCACGTTAAGCTCCCTGGACCTTCCCTCAGAGAACCCAACGTTTACGAGTTTGGAACTCCTTACAAGCAGATGTTAGACGAGCTCAGACGAAAAGACCCAGAATTGTACAAGCGGAATGGCATTTTGCCTATGCTTAAGAGAAACGCGGCAGTTAAACTGGCACCTCAGCGGTGGCAAGACAATGCTGCTGATGGTTTCTTTGACGTGGTATTTACTTTCGAAGAAAAGGTTTTTGATATGGTTGTTGAAGATCTTCACAATCGGGATCATGTGCTTAAGAAGTGTGTATTGATAATCAACTTGGAAGTAAAAGATAACCACGAGGAAGCAGCTGTGGGAGCTCGTCTTGCTTTAGATCTTTGCCAAGAGATTGATGCGACCGAGTCATGGGAGGATTCAATCGATGACATTCTGACTGCTTTTGAGAAACAGCATCGGCGGAAGTTACTGTATAGCATCTCATATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0010073 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048507 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

193

Amino Acids

22.39

Weight (kDa)

6.09

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ssu72	PF04722	4 - 193	2.3e-82	Ssu72-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23380 AT1G23380 AT1G70510 AT1G70510
fragaria_vesca	FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_5g05530 FvH4_5g05530
malus_domestica	MD06G1171700.v1.1 MD13G1095800.v1.1 MD14G1177200.v1.1 MD16G1097200.v1.1
prunus_persica	Prupe.1G249600_v2.0.a1 Prupe.5G171100_v2.0.a1
pyrus_communis	pycom06g15280 pycom13g08340 pycom14g14800 pycom16g08280
rosa_chinensis	RchiOBHm_Chr4g0433571 RchiOBHm_Chr7g0193251
rosa_laevigata	RLG00000004283 RLG00000006743
rosa_multiflora	Rmu_sc0017266.1_g000003
rosa_roxburghii	Rroxscaffold_3G00262250 Rroxscaffold_5G00375060
rosa_rugosa	Rorug04G0269800 Rorug07G0008500 Rorug07G0008600
rosa_samantha	Rh4AG324700 Rh4BG332400 Rh4CG347700 Rh4DG328800 Rh7AG134100 Rh7BG135100 Rh7CG138100 Rh7DG136100
rosa_wichuraiana	Rw4G028100 Rw7G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	271
AccII	CGCG	2 cut(s)	62, 257
AciI	CCGC	4 cut(s)	223, 257, 280, 550
AclI	AACGTT	1 cut(s)	150
AclWI	GGATC	3 cut(s)	102, 115, 384
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	3 cut(s)	14, 98, 218
AfiI	CCNNNNNNNGG	2 cut(s)	49, 498
AflII	CTTAAG	2 cut(s)	245, 386
AgsI	TTSAA	2 cut(s)	359, 510
AhdI	GACNNNNNGTC	1 cut(s)	91
AjiI	CACGTC	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	4 cut(s)	121, 193, 443, 452
AluI	AGCT	4 cut(s)	121, 193, 443, 452
Alw21I	GWGCWC	3 cut(s)	29, 195, 454
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	3 cut(s)	102, 115, 384
ApeKI	GCWGC	2 cut(s)	296, 440
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	128
AsuII	TTCGAA	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	128
BamHI	GGATCC	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	271
BanII	GRGCYC	2 cut(s)	195, 454
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	431
Bbv12I	GWGCWC	3 cut(s)	29, 195, 454
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	283, 452
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	94
BfrI	CTTAAG	2 cut(s)	245, 386
BglII	AGATCT	2 cut(s)	361, 466
BisI	GCNGC	3 cut(s)	258, 297, 441
BlsI	GCNGC	3 cut(s)	259, 298, 442
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	128
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	2 cut(s)	109, 273
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	3 cut(s)	475, 553, 576
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	18, 124
BsaWI	WCCGGW	2 cut(s)	9, 42
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 498
Bse1I	ACTGG	2 cut(s)	109, 273
BseBI	CCWGG	1 cut(s)	126
BseCI	ATCGAT	1 cut(s)	513
BseDI	CCNNGG	2 cut(s)	18, 124
BseLI	CCNNNNNNNGG	2 cut(s)	49, 498
BseMII	CTCAG	3 cut(s)	151, 208, 290
BseNI	ACTGG	2 cut(s)	109, 273
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	2 cut(s)	283, 452
Bsh1236I	CGCG	2 cut(s)	62, 257
Bsh1285I	CGRYCG	1 cut(s)	492
BshNI	GGYRCC	1 cut(s)	271
BshVI	ATCGAT	1 cut(s)	513
BsiEI	CGRYCG	1 cut(s)	492
BsiHKAI	GWGCWC	3 cut(s)	29, 195, 454
BsiSI	CCGG	2 cut(s)	10, 43
BsiWI	CGTACG	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	49, 498
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	330
Bsp1286I	GDGCHC	3 cut(s)	29, 195, 454
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	4 cut(s)	107, 361, 376, 466
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	4 cut(s)	223, 257, 280, 550
BspCNI	CTCAG	3 cut(s)	150, 207, 289
BspDI	ATCGAT	1 cut(s)	513
BspFNI	CGCG	2 cut(s)	62, 257
BspLI	GGNNCC	2 cut(s)	109, 273
BspPI	GGATC	3 cut(s)	102, 115, 384
BspT104I	TTCGAA	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	271
BspTI	CTTAAG	2 cut(s)	245, 386
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	109, 273
BssECI	CCNNGG	2 cut(s)	18, 124
BssMI	GATC	4 cut(s)	107, 361, 376, 466
BssNI	GRCGYC	1 cut(s)	87
BssSI	CACGAG	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	431
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	561
BstACI	GRCGYC	1 cut(s)	87
BstAFI	CTTAAG	2 cut(s)	245, 386
BstAUI	TGTACA	1 cut(s)	216
BstBI	TTCGAA	1 cut(s)	330
BstDEI	CTNAG	3 cut(s)	137, 194, 276
BstDSI	CCRYGG	1 cut(s)	18
BstFNI	CGCG	2 cut(s)	62, 257
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	4 cut(s)	110, 364, 379, 469
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	4 cut(s)	107, 361, 376, 466
BstMCI	CGRYCG	1 cut(s)	492
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 449, 458
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstUI	CGCG	2 cut(s)	62, 257
BstV1I	GCAGC	2 cut(s)	283, 452
BstX2I	RGATCY	3 cut(s)	107, 361, 466
BstYI	RGATCY	3 cut(s)	107, 361, 466
Bsu15I	ATCGAT	1 cut(s)	513
BsuTUI	ATCGAT	1 cut(s)	513
BtgI	CCRYGG	1 cut(s)	18
BtrI	CACGTC	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	102
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	128
ClaI	ATCGAT	1 cut(s)	513
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	3 cut(s)	13, 97, 217
CviAII	CATG	4 cut(s)	19, 49, 380, 498
CviJI	RGCY	6 cut(s)	56, 81, 121, 193, 443, 452
CviKI_1	RGCY	6 cut(s)	56, 81, 121, 193, 443, 452
CviQI	GTAC	3 cut(s)	13, 97, 217
DdeI	CTNAG	3 cut(s)	137, 194, 276
DpnI	GATC	4 cut(s)	109, 363, 378, 468
DpnII	GATC	4 cut(s)	107, 361, 376, 466
DriI	GACNNNNNGTC	1 cut(s)	91
Eam1105I	GACNNNNNGTC	1 cut(s)	91
EciI	GGCGGA	1 cut(s)	565
Ecl136II	GAGCTC	2 cut(s)	193, 452
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	2 cut(s)	195, 454
Eco47I	GGWCC	1 cut(s)	128
Eco53kI	GAGCTC	2 cut(s)	193, 452
EcoICRI	GAGCTC	2 cut(s)	193, 452
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	2 cut(s)	195, 454
ErhI	CCWWGG	1 cut(s)	18
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	4 cut(s)	22, 52, 383, 501
FaiI	YATR	8 cut(s)	20, 50, 242, 350, 381, 499, 564, 574
FatI	CATG	4 cut(s)	18, 48, 379, 497
Fnu4HI	GCNGC	3 cut(s)	258, 297, 441
FriOI	GRGCYC	2 cut(s)	195, 454
Fsp4HI	GCNGC	3 cut(s)	258, 297, 441
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	3 cut(s)	258, 297, 441
HapII	CCGG	2 cut(s)	10, 43
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	4 cut(s)	22, 52, 383, 501
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	2 cut(s)	494, 506
HpaII	CCGG	2 cut(s)	10, 43
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	3 cut(s)	140, 197, 525
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	2 cut(s)	89, 97
HpyAV	CCTTC	1 cut(s)	141
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4IV	ACGT	4 cut(s)	87, 114, 150, 315
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 449, 458
HpyF3I	CTNAG	3 cut(s)	137, 194, 276
HpySE526I	ACGT	4 cut(s)	87, 114, 150, 315
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	4 cut(s)	22, 52, 383, 501
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	4 cut(s)	107, 361, 376, 466
LmnI	GCTCC	4 cut(s)	45, 69, 126, 449
LpnPI	CCDG	8 cut(s)	23, 50, 56, 90, 111, 138, 222, 254
Lsp1109I	GCAGC	2 cut(s)	283, 452
LweI	GCATC	3 cut(s)	475, 553, 576
MaeII	ACGT	4 cut(s)	87, 114, 150, 315
MaeIII	GTNAC	1 cut(s)	555
MalI	GATC	4 cut(s)	109, 363, 378, 468
MboI	GATC	4 cut(s)	107, 361, 376, 466
MboII	GAAGA	3 cut(s)	344, 356, 371
MflI	RGATCY	3 cut(s)	107, 361, 466
MhlI	GDGCHC	3 cut(s)	29, 195, 454
MluCI	AATT	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	6 cut(s)	46, 77, 146, 285, 427, 496
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	4 cut(s)	117, 246, 264, 387
MspA1I	CMGCKG	2 cut(s)	280, 443
MspCI	CTTAAG	2 cut(s)	245, 386
MspI	CCGG	2 cut(s)	10, 43
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	2 cut(s)	62, 257
MwoI	GCNNNNNNNGC	3 cut(s)	70, 449, 458
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	4 cut(s)	107, 361, 376, 466
NlaIII	CATG	4 cut(s)	22, 52, 383, 501
NlaIV	GGNNCC	2 cut(s)	109, 273
NspV	TTCGAA	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	506
Pfl23II	CGTACG	1 cut(s)	96
PflFI	GACNNNGTC	1 cut(s)	493
PkrI	GCNGC	3 cut(s)	259, 298, 442
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
Psp124BI	GAGCTC	2 cut(s)	195, 454
Psp1406I	AACGTT	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspLI	CGTACG	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	109, 273
PspPI	GGNCC	1 cut(s)	128
PsuI	RGATCY	3 cut(s)	107, 361, 466
PsyI	GACNNNGTC	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	3 cut(s)	14, 98, 218
RsaNI	GTAC	3 cut(s)	13, 97, 217
SacI	GAGCTC	2 cut(s)	195, 454
SaqAI	TTAA	4 cut(s)	117, 246, 264, 387
SatI	GCNGC	3 cut(s)	258, 297, 441
Sau3AI	GATC	4 cut(s)	107, 361, 376, 466
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	1 cut(s)	126
SduI	GDGCHC	3 cut(s)	29, 195, 454
SfaNI	GCATC	3 cut(s)	475, 553, 576
SfuI	TTCGAA	1 cut(s)	330
SinI	GGWCC	1 cut(s)	128
SmlI	CTYRAG	3 cut(s)	68, 245, 386
SmoI	CTYRAG	3 cut(s)	68, 245, 386
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	4 cut(s)	223, 257, 280, 550
SstI	GAGCTC	2 cut(s)	195, 454
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	561
TaiI	ACGT	4 cut(s)	90, 117, 153, 318
TaqI	TCGA	3 cut(s)	84, 330, 513
TaqII	GACCGA	1 cut(s)	506
TasI	AATT	1 cut(s)	212
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	4 cut(s)	117, 246, 264, 387
Tru9I	TTAA	4 cut(s)	117, 246, 264, 387
TscAI	CASTG	1 cut(s)	109
TseI	GCWGC	2 cut(s)	296, 440
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	109
Tth111I	GACNNNGTC	1 cut(s)	493
Vha464I	CTTAAG	2 cut(s)	245, 386
VpaK11BI	GGWCC	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	363
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.