Prupe.5G171100_v2.0.a1

ELK

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
14628747 .. 14634843
6097 bp
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UTR
Exon/CDS
Intron
Prupe.5G171100.1

Sequence Viewer

Length: 1074 bp
ATGATGGAGGAACTGTACGGCCTCGCCTCATCGACGCCGGCTTCAGGTTTCAGCTCTGATCAATACTACTCTTCATCAATGGCCATGCCGGAGAATCTAACGGTTCCTGATCATCATCAGCATCATCAGCATCAGGTGGAGGTGGACTGCTACGACTACTACCACAAGAGCGCCTTCGAGCCTTTGGCGGCGGTTTTGGGCGACCGGATGCCCGGGCTGCAGAGGCCCGACCCCGTGTTTTCGGGTTGCTCCTCTGGTGTATCGGATGCTGCTTCGGCTGTGGCTGTTGGAATTAATAATCAAAGAGAAAGAGGAGGAGGGTGTGGTTTGGGAGAGGAGGTTTTGTGCGAAATGAATGCGAAGATCGCTTCACATCCTCTTTACCCCAAGCTTCTTCAAGCTTACATCGATTGCCAAAAGGTGGGAGCGCCACCAGAAGTGGCAAGTGTGTTGGACGAAATCAGGAGGGAAAGTGATCATCTAATTTGTAGGAGAAGTTCAACTTCAGCTTCAACTTGCATGGCAACTGCGGATCCTGAGCTCGATGCCTTCATGGAAACATACTGCGATATATTACTCAAGTACAAATCGGATCTTACGAGACCTTTCGATGAAGCAATAACCTTCTTAAACAAGATGGAGACGCAGCTCATCACTCTCTCCTCCAATAACACTACTACTCCTAACGACGGTGGTGGTTCATCTGATGAAGAAGACTTGAGTGGAGGAGAGACGTCTCCACGAACAGGCGAAGAGCACGAGCTCAAGGACAAACTCCTACGTAAATACAGTGGCTATATAAGCACTCTCAAGCATGAATTCTCCAAGAAGAAGAAGAAAGGGAAGCTCCCGAGAGAAGCTAGGCAAACCCTCTTTGATTGGTGGAACCTTCACGACAAATGGCCATACCCAACGGAAGCAGACAAAATCTCGTTGGCTCAGGTGACGGGATTGGATCAGAAACAAATAAACAACTGGTTTATAAATCAGAGGAAGCGCCATTGGAAGCCATCAGAGAACATGCAGTTTGCTGTCATGGATACCATTTATCGACCTTGTTTTACCAAGGACTGA

Protein Analysis

358

Amino Acids

40.11

Weight (kDa)

5.51

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 983
AatII GACGTC 1 cut(s) 737
AccB7I CCANNNNNTGG 1 cut(s) 421
AciI CCGC 3 cut(s) 188, 191, 530
AclWI GGATC 4 cut(s) 527, 540, 600, 963
AcoI YGGCCR 2 cut(s) 81, 902
AcsI RAATTY 1 cut(s) 818
AcuI CTGAAG 2 cut(s) 27, 489
AcyI GRCGYC 2 cut(s) 35, 734
AfaI GTAC 2 cut(s) 17, 584
AfiI CCNNNNNNNGG 4 cut(s) 44, 421, 689, 746
AgsI TTSAA 3 cut(s) 398, 501, 513
AluBI AGCT 9 cut(s) 54, 391, 401, 509, 541, 649, 763, 847, 860
AluI AGCT 9 cut(s) 54, 391, 401, 509, 541, 649, 763, 847, 860
Alw21I GWGCWC 3 cut(s) 543, 759, 765
Alw26I GTCTC 4 cut(s) 595, 635, 725, 741
AlwI GGATC 4 cut(s) 527, 540, 600, 963
Ama87I CYCGRG 2 cut(s) 212, 850
AoxI GGCC 4 cut(s) 19, 81, 224, 902
ApeKI GCWGC 3 cut(s) 217, 269, 646
ApoI RAATTY 1 cut(s) 818
AseI ATTAAT 1 cut(s) 294
AspLEI GCGC 3 cut(s) 173, 430, 999
AspS9I GGNCC 1 cut(s) 225
AsuC2I CCSGG 2 cut(s) 213, 214
AsuHPI GGTGA 1 cut(s) 955
AvaI CYCGRG 2 cut(s) 212, 850
BalI TGGCCA 2 cut(s) 83, 904
BamHI GGATCC 1 cut(s) 532
BanII GRGCYC 2 cut(s) 543, 765
BauI CACGAG 1 cut(s) 758
BbsI GAAGAC 1 cut(s) 720
Bbv12I GWGCWC 3 cut(s) 543, 759, 765
BbvI GCAGC 3 cut(s) 204, 256, 658
BccI CCATC 2 cut(s) 631, 1018
BceAI ACGGC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciVI GTATCC 1 cut(s) 1033
BclI TGATCA 3 cut(s) 58, 109, 475
BcnI CCSGG 2 cut(s) 213, 214
BcoDI GTCTC 4 cut(s) 595, 635, 725, 741
BfaI CTAG 1 cut(s) 861
BfmI CTRYAG 1 cut(s) 218
BfoI RGCGCY 3 cut(s) 174, 431, 1000
BfuI GTATCC 1 cut(s) 1033
BisI GCNGC 4 cut(s) 189, 218, 270, 647
BlsI GCNGC 4 cut(s) 190, 219, 271, 648
Bme1390I CCNGG 2 cut(s) 213, 214
BmeT110I CYCGRG 2 cut(s) 212, 850
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 3 cut(s) 105, 534, 887
BmrFI CCNGG 2 cut(s) 213, 214
BmsI GCATC 5 cut(s) 130, 139, 198, 256, 535
BpiI GAAGAC 1 cut(s) 720
Bpu10I CCTNAGC 2 cut(s) 537, 939
BpuEI CTTGAG 4 cut(s) 563, 739, 749, 794
BpuMI CCSGG 2 cut(s) 213, 214
Bsa29I ATCGAT 1 cut(s) 408
BsaAI YACGTR 1 cut(s) 782
BsaBI GATNNNNATC 1 cut(s) 114
BsaHI GRCGYC 2 cut(s) 35, 734
BsaI GGTCTC 1 cut(s) 595
BsaJI CCNNGG 2 cut(s) 212, 1065
BsaWI WCCGGW 1 cut(s) 204
BsaXI ACNNNNNCTCC 9 cut(s) 29, 324, 329, 354, 359, 457, 487, 664, 694
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 421, 689, 746
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 980
Bse8I GATNNNNATC 1 cut(s) 114
BseCI ATCGAT 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 212, 1065
BseGI GGATG 3 cut(s) 213, 271, 373
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 4 cut(s) 44, 421, 689, 746
BseMII CTCAG 2 cut(s) 528, 953
BseNI ACTGG 1 cut(s) 980
BseRI GAGGAG 6 cut(s) 241, 327, 330, 350, 652, 741
BseXI GCAGC 3 cut(s) 204, 256, 658
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 4 cut(s) 21, 83, 226, 904
BshVI ATCGAT 1 cut(s) 408
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 3 cut(s) 543, 759, 765
BsiHKCI CYCGRG 2 cut(s) 212, 850
BsiSI CCGG 4 cut(s) 38, 89, 205, 213
BslI CCNNNNNNNGG 4 cut(s) 44, 421, 689, 746
BsmAI GTCTC 4 cut(s) 595, 635, 725, 741
BsmBI CGTCTC 3 cut(s) 635, 725, 741
BsmI GAATGC 1 cut(s) 361
BsnI GGCC 4 cut(s) 21, 83, 226, 904
Bso31I GGTCTC 1 cut(s) 595
BsoBI CYCGRG 2 cut(s) 212, 850
Bsp1286I GDGCHC 3 cut(s) 543, 759, 765
Bsp143I GATC 7 cut(s) 58, 109, 363, 475, 532, 592, 955
BspACI CCGC 3 cut(s) 188, 191, 530
BspANI GGCC 4 cut(s) 21, 83, 226, 904
BspCNI CTCAG 2 cut(s) 529, 952
BspDI ATCGAT 1 cut(s) 408
BspLI GGNNCC 3 cut(s) 105, 534, 887
BspMAI CTGCAG 1 cut(s) 222
BspPI GGATC 4 cut(s) 527, 540, 600, 963
BspQI GCTCTTC 1 cut(s) 747
BspTNI GGTCTC 1 cut(s) 595
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 1 cut(s) 980
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 2 cut(s) 212, 1065
BssMI GATC 7 cut(s) 58, 109, 363, 475, 532, 592, 955
BssNI GRCGYC 2 cut(s) 35, 734
BssSI CACGAG 1 cut(s) 758
BssT1I CCWWGG 1 cut(s) 1065
Bst2BI CACGAG 1 cut(s) 758
Bst4CI ACNGT 4 cut(s) 15, 103, 692, 791
Bst6I CTCTTC 2 cut(s) 76, 747
BstACI GRCGYC 2 cut(s) 35, 734
BstBAI YACGTR 1 cut(s) 782
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 537, 939
BstF5I GGATG 3 cut(s) 213, 271, 373
BstH2I RGCGCY 3 cut(s) 174, 431, 1000
BstHHI GCGC 3 cut(s) 173, 430, 999
BstKTI GATC 7 cut(s) 61, 112, 366, 478, 535, 595, 958
BstMAI GTCTC 4 cut(s) 595, 635, 725, 741
BstMBI GATC 7 cut(s) 58, 109, 363, 475, 532, 592, 955
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 6 cut(s) 127, 217, 223, 275, 365, 801
BstNSI RCATGY 1 cut(s) 1024
BstSCI CCNGG 2 cut(s) 211, 212
BstSFI CTRYAG 1 cut(s) 218
BstSNI TACGTA 1 cut(s) 782
BstV1I GCAGC 3 cut(s) 204, 256, 658
BstV2I GAAGAC 1 cut(s) 720
BstX2I RGATCY 2 cut(s) 532, 592
BstYI RGATCY 2 cut(s) 532, 592
Bsu15I ATCGAT 1 cut(s) 408
BsuI GTATCC 1 cut(s) 1033
BsuRI GGCC 4 cut(s) 21, 83, 226, 904
BsuTUI ATCGAT 1 cut(s) 408
BtsCI GGATG 3 cut(s) 213, 271, 373
BtsIMutI CAGTG 1 cut(s) 796
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 3 cut(s) 173, 430, 999
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 225
Cfr9I CCCGGG 1 cut(s) 212
ClaI ATCGAT 1 cut(s) 408
CseI GACGC 2 cut(s) 43, 652
Csp6I GTAC 2 cut(s) 16, 583
CviAII CATG 6 cut(s) 85, 520, 553, 815, 1021, 1036
CviQI GTAC 2 cut(s) 16, 583
DdeI CTNAG 2 cut(s) 537, 939
DpnI GATC 7 cut(s) 60, 111, 365, 477, 534, 594, 957
DpnII GATC 7 cut(s) 58, 109, 363, 475, 532, 592, 955
EaeI YGGCCR 2 cut(s) 81, 902
Eam1104I CTCTTC 2 cut(s) 76, 747
EarI CTCTTC 2 cut(s) 76, 747
Ecl136II GAGCTC 2 cut(s) 541, 763
Eco105I TACGTA 1 cut(s) 782
Eco130I CCWWGG 1 cut(s) 1065
Eco24I GRGCYC 2 cut(s) 543, 765
Eco31I GGTCTC 1 cut(s) 595
Eco53kI GAGCTC 2 cut(s) 541, 763
Eco57I CTGAAG 2 cut(s) 27, 489
Eco88I CYCGRG 2 cut(s) 212, 850
EcoICRI GAGCTC 2 cut(s) 541, 763
EcoRI GAATTC 1 cut(s) 818
EcoT14I CCWWGG 1 cut(s) 1065
EcoT38I GRGCYC 2 cut(s) 543, 765
ErhI CCWWGG 1 cut(s) 1065
Esp3I CGTCTC 3 cut(s) 635, 725, 741
FaeI CATG 6 cut(s) 88, 523, 556, 818, 1024, 1039
FalI AAGNNNNNCTT 4 cut(s) 158, 190, 487, 519
FatI CATG 6 cut(s) 84, 519, 552, 814, 1020, 1035
FbaI TGATCA 3 cut(s) 58, 109, 475
Fnu4HI GCNGC 4 cut(s) 189, 218, 270, 647
FokI GGATG 3 cut(s) 220, 278, 360
FriOI GRGCYC 2 cut(s) 543, 765
Fsp4HI GCNGC 4 cut(s) 189, 218, 270, 647
FspBI CTAG 1 cut(s) 861
GlaI GCGC 3 cut(s) 172, 429, 998
GluI GCNGC 4 cut(s) 189, 218, 270, 647
HaeII RGCGCY 3 cut(s) 174, 431, 1000
HaeIII GGCC 4 cut(s) 21, 83, 226, 904
HapII CCGG 4 cut(s) 38, 89, 205, 213
HgaI GACGC 2 cut(s) 43, 652
HhaI GCGC 3 cut(s) 173, 430, 999
Hin1I GRCGYC 2 cut(s) 35, 734
Hin1II CATG 6 cut(s) 88, 523, 556, 818, 1024, 1039
Hin6I GCGC 3 cut(s) 171, 428, 997
HinP1I GCGC 3 cut(s) 171, 428, 997
HindIII AAGCTT 2 cut(s) 389, 399
HinfI GANTC 1 cut(s) 94
HpaII CCGG 4 cut(s) 38, 89, 205, 213
HphI GGTGA 1 cut(s) 955
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 7 cut(s) 58, 265, 592, 706, 960, 990, 1015
Hpy188III TCNNGA 5 cut(s) 107, 463, 536, 850, 893
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 2 cut(s) 37, 692
HpyAV CCTTC 4 cut(s) 184, 559, 634, 899
HpyCH4III ACNGT 4 cut(s) 15, 103, 692, 791
HpyCH4IV ACGT 2 cut(s) 734, 781
HpyCH4V TGCA 3 cut(s) 220, 519, 1024
HpyF10VI GCNNNNNNNGC 6 cut(s) 127, 217, 223, 275, 365, 801
HpyF3I CTNAG 2 cut(s) 537, 939
HpySE526I ACGT 2 cut(s) 734, 781
Hsp92I GRCGYC 2 cut(s) 35, 734
Hsp92II CATG 6 cut(s) 88, 523, 556, 818, 1024, 1039
HspAI GCGC 3 cut(s) 171, 428, 997
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Ksp22I TGATCA 3 cut(s) 58, 109, 475
Kzo9I GATC 7 cut(s) 58, 109, 363, 475, 532, 592, 955
LguI GCTCTTC 1 cut(s) 747
LmnI GCTCC 3 cut(s) 254, 425, 852
Lsp1109I GCAGC 3 cut(s) 204, 256, 658
LweI GCATC 5 cut(s) 130, 139, 198, 256, 535
MaeI CTAG 1 cut(s) 861
MaeII ACGT 2 cut(s) 734, 781
MaeIII GTNAC 1 cut(s) 943
MalI GATC 7 cut(s) 60, 111, 365, 477, 534, 594, 957
MboI GATC 7 cut(s) 58, 109, 363, 475, 532, 592, 955
MboII GAAGA 9 cut(s) 63, 373, 386, 722, 725, 764, 841, 844, 847
MflI RGATCY 2 cut(s) 532, 592
MhlI GDGCHC 3 cut(s) 543, 759, 765
MlsI TGGCCA 2 cut(s) 83, 904
MluCI AATT 3 cut(s) 291, 483, 818
MluNI TGGCCA 2 cut(s) 83, 904
MmeI TCCRAC 2 cut(s) 268, 432
Mox20I TGGCCA 2 cut(s) 83, 904
MroNI GCCGGC 1 cut(s) 37
MscI TGGCCA 2 cut(s) 83, 904
MseI TTAA 2 cut(s) 294, 629
Msp20I TGGCCA 2 cut(s) 83, 904
MspI CCGG 4 cut(s) 38, 89, 205, 213
MspR9I CCNGG 2 cut(s) 213, 214
Mva1269I GAATGC 1 cut(s) 361
MwoI GCNNNNNNNGC 6 cut(s) 127, 217, 223, 275, 365, 801
NaeI GCCGGC 1 cut(s) 39
NciI CCSGG 2 cut(s) 213, 214
NdeII GATC 7 cut(s) 58, 109, 363, 475, 532, 592, 955
NgoMIV GCCGGC 1 cut(s) 37
NlaIII CATG 6 cut(s) 88, 523, 556, 818, 1024, 1039
NlaIV GGNNCC 3 cut(s) 105, 534, 887
NmuCI GTSAC 1 cut(s) 943
NspI RCATGY 1 cut(s) 1024
PciSI GCTCTTC 1 cut(s) 747
PcsI WCGNNNNNNNCGW 1 cut(s) 596
PctI GAATGC 1 cut(s) 361
PdiI GCCGGC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 94
PflMI CCANNNNNTGG 1 cut(s) 421
PkrI GCNGC 4 cut(s) 190, 219, 271, 648
Ppu21I YACGTR 1 cut(s) 782
PshBI ATTAAT 1 cut(s) 294
PsiI TTATAA 1 cut(s) 983
Psp124BI GAGCTC 2 cut(s) 543, 765
PspN4I GGNNCC 3 cut(s) 105, 534, 887
PspPI GGNCC 1 cut(s) 225
PsrI GAACNNNNNNTAC 2 cut(s) 481, 513
PstI CTGCAG 1 cut(s) 222
PsuI RGATCY 2 cut(s) 532, 592
RsaI GTAC 2 cut(s) 17, 584
RsaNI GTAC 2 cut(s) 16, 583
SacI GAGCTC 2 cut(s) 543, 765
SapI GCTCTTC 1 cut(s) 747
SaqAI TTAA 2 cut(s) 294, 629
SatI GCNGC 4 cut(s) 189, 218, 270, 647
Sau3AI GATC 7 cut(s) 58, 109, 363, 475, 532, 592, 955
Sau96I GGNCC 1 cut(s) 225
ScrFI CCNGG 2 cut(s) 213, 214
SduI GDGCHC 3 cut(s) 543, 759, 765
SfaNI GCATC 5 cut(s) 130, 139, 198, 256, 535
SfcI CTRYAG 1 cut(s) 218
SmaI CCCGGG 1 cut(s) 214
SmlI CTYRAG 4 cut(s) 578, 718, 764, 809
SmoI CTYRAG 4 cut(s) 578, 718, 764, 809
SnaBI TACGTA 1 cut(s) 782
SrfI GCCCGGGC 1 cut(s) 214
Sse9I AATT 3 cut(s) 291, 483, 818
SsiI CCGC 3 cut(s) 188, 191, 530
SspMI CTAG 1 cut(s) 861
SstI GAGCTC 2 cut(s) 543, 765
StyD4I CCNGG 2 cut(s) 211, 212
StyI CCWWGG 1 cut(s) 1065
TaaI ACNGT 4 cut(s) 15, 103, 692, 791
TaiI ACGT 2 cut(s) 737, 784
TaqI TCGA 6 cut(s) 32, 177, 408, 543, 609, 1051
TasI AATT 3 cut(s) 291, 483, 818
TatI WGTACW 1 cut(s) 582
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 2 cut(s) 294, 629
Tru9I TTAA 2 cut(s) 294, 629
TscAI CASTG 1 cut(s) 796
TseFI GTSAC 1 cut(s) 943
TseI GCWGC 3 cut(s) 217, 269, 646
Tsp45I GTSAC 1 cut(s) 943
TspDTI ATGAA 7 cut(s) 63, 368, 541, 627, 690, 723, 831
TspGWI ACGGA 1 cut(s) 929
TspMI CCCGGG 1 cut(s) 212
TspRI CASTG 1 cut(s) 796
Van91I CCANNNNNTGG 1 cut(s) 421
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 1 cut(s) 818
XceI RCATGY 1 cut(s) 1024
XmaI CCCGGG 1 cut(s) 212
XspI CTAG 1 cut(s) 861
ZraI GACGTC 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.