Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002636

Physical Location & Seq

Genomic Coordinates Reverse (-)

55940627 .. 55946849

Gene Structure 6223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGAGGAAATGTACGGATTGCAATCAGCTGTGGACTACGGGGATAAGTCGACGGACTACGCCGACAAGGCCCTTATGACGCCGGAGAACCTGATCCTTCCTATGGATTACCAGAGCCTGCTCTCCTCCGGAGCTTTCCGCGACCATCGGGTCCCGATGATGTTCGGATCCGACGCCGGCGACTTGTACTCGGCCATATCATCCGTGCCGGAGTTTCGGCGCGGGGAGGAAGATGTTTTTGGAGCCATCAAAGCCAAAATTGCTTCCCATCCAAGCTACCCTAGACTCATTGAGGCCTACATCGATTGCCAGAAGGTAGGAGCGCCTCCGGAAATAGCGAGCTTCTTGGAGGAAATCCGCCGAGAAAATGACCTTTATAAACGAGAAAGAGACGCTGCTATGTCCACGTGTTTAGCAGCCGATCCCGAGCTCGACGAGTTCATGGAAACCTACTGCCATATGCTGGTTAAGTACAAATCAGATCTAGCAAGGCCTTTTGATGAAGCCACCACGTTCTTGAACAAGATTGAAACGCAACTCAGCAATCTCTGCATTCGAACTCTCTCCGGTGGGGCTCATGCCCCACCACGCCATGTCACAGGAATTAATAAGCAGCAGCTAGCTATATATGCCGCAGCTGGGTTTTTCTTGGCTAAGATTAACCTTAGTGAAGGCGGTGGGACTTCGTATCTGTACCTAGAGACTCTGGCTTATTGTGGTGGTTGTGGGGTTGTGTGTGTCAATTTGGATTTGATGGATGGGCTCTACCTAGTCTTGTCCACTCTCGATGAAGGTGCTGTGTCATCAGAGGAGGAGTTCAGCGGAGGCGAATTAGAGGTACAAGAAGCTCATGCAAGGGGAGAAGATCGAGACCTCAAAAATAGGCTTTTCCGTAAGTTTGGCAGTCATATTGGCACCTTGAAGCTGGAATTCTCCAAGAAGAAGAAGAAGGGAAAGCTTCCGAAGGAAGCAAGACAAGCGTTACTTCATTGGTGGAGTGTTCACTATAAATGGCCATACCCGACGGAGGCTGATAAGATTGCACTGGCGGAATCAACGGGGCTCGATCAGAGGCAAATCAACAACTGGTTCATCAATCAGCGGAAACGTCATTGGAGACCATCTGAAAACATGCAATTTGCCGTCATGGATAACCTTTCTGGACCATTCTTTGCCGACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010073 GO:0010093 GO:0010094 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

394

Amino Acids

44.35

Weight (kDa)

5.35

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	82 - 124	2.5e-21	KNOX1 domain
KNOX2	PF03791	138 - 184	8.2e-26	KNOX2 domain
ELK	PF03789	291 - 312	6.9e-06	ELK domain
Homeobox_KN	PF05920	331 - 370	2.7e-18	Homeobox KN domain
Homeodomain	PF00046	338 - 371	8.3e-07	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23380 AT1G23380 AT1G70510 AT1G70510
fragaria_vesca	FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_5g05530 FvH4_5g05530
malus_domestica	MD06G1171700.v1.1 MD13G1095800.v1.1 MD14G1177200.v1.1 MD16G1097200.v1.1
prunus_persica	Prupe.1G249600_v2.0.a1 Prupe.5G171100_v2.0.a1
pyrus_communis	pycom06g15280 pycom13g08340 pycom14g14800 pycom16g08280
rosa_chinensis	RchiOBHm_Chr4g0433571 RchiOBHm_Chr7g0193251
rosa_laevigata	RLG00000004283 RLG00000006743
rosa_multiflora	Rmu_sc0017266.1_g000003
rosa_roxburghii	Rroxscaffold_3G00262250 Rroxscaffold_5G00375060
rosa_rugosa	Rorug04G0269800 Rorug07G0008500 Rorug07G0008600
rosa_samantha	Rh4AG324700 Rh4BG332400 Rh4CG347700 Rh4DG328800 Rh7AG134100 Rh7BG135100 Rh7CG138100 Rh7DG136100
rosa_wichuraiana	Rw4G028100 Rw7G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
AasI	GACNNNNNNGTC	1 cut(s)	149
AccB1I	GGYRCC	1 cut(s)	914
AccB7I	CCANNNNNTGG	1 cut(s)	463
AccI	GTMKAC	1 cut(s)	50
AccII	CGCG	2 cut(s)	141, 222
AccIII	TCCGGA	2 cut(s)	128, 328
AciI	CCGC	8 cut(s)	139, 222, 358, 633, 675, 822, 1049, 1102
AclWI	GGATC	4 cut(s)	88, 162, 175, 416
AcoI	YGGCCR	2 cut(s)	192, 1013
AcsI	RAATTY	1 cut(s)	929
AcvI	CACGTG	1 cut(s)	408
AcyI	GRCGYC	2 cut(s)	80, 174
AfaI	GTAC	5 cut(s)	14, 188, 473, 695, 840
AfiI	CCNNNNNNNGG	4 cut(s)	103, 463, 639, 1027
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	3 cut(s)	520, 530, 922
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	4 cut(s)	384, 695, 864, 1111
AlwI	GGATC	4 cut(s)	88, 162, 175, 416
AlwNI	CAGNNNCTG	1 cut(s)	118
Ama87I	CYCGRG	1 cut(s)	425
Aor13HI	TCCGGA	2 cut(s)	128, 328
AoxI	GGCC	5 cut(s)	69, 192, 294, 491, 1013
ApeKI	GCWGC	5 cut(s)	395, 416, 613, 616, 635
ApoI	RAATTY	1 cut(s)	929
AseI	ATTAAT	1 cut(s)	606
AspLEI	GCGC	2 cut(s)	222, 325
AspS9I	GGNCC	3 cut(s)	70, 151, 1163
AsuII	TTCGAA	1 cut(s)	556
AsuNHI	GCTAGC	1 cut(s)	619
AvaI	CYCGRG	1 cut(s)	425
AvaII	GGWCC	2 cut(s)	151, 1163
BalI	TGGCCA	1 cut(s)	1015
BamHI	GGATCC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	914
BanII	GRGCYC	4 cut(s)	432, 577, 765, 1065
BbrPI	CACGTG	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	5 cut(s)	382, 428, 625, 628, 647
BccI	CCATC	6 cut(s)	153, 254, 276, 748, 752, 1129
BceAI	ACGGC	1 cut(s)	1127
BcgI	CGANNNNNNTGC	2 cut(s)	776, 810
BcoDI	GTCTC	4 cut(s)	384, 695, 864, 1111
BfaI	CTAG	5 cut(s)	282, 485, 620, 698, 770
BfoI	RGCGCY	1 cut(s)	326
BglI	GCCNNNNNGGC	1 cut(s)	68
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	6 cut(s)	396, 417, 614, 617, 633, 636
BlsI	GCNGC	6 cut(s)	397, 418, 615, 618, 634, 637
Bme18I	GGWCC	2 cut(s)	151, 1163
BmeT110I	CYCGRG	1 cut(s)	425
BmgT120I	GGNCC	3 cut(s)	70, 151, 1163
BmiI	GGNNCC	5 cut(s)	152, 153, 169, 244, 916
BmtI	GCTAGC	1 cut(s)	623
Bpu14I	TTCGAA	1 cut(s)	556
Bsa29I	ATCGAT	1 cut(s)	303
BsaAI	YACGTR	1 cut(s)	408
BsaBI	GATNNNNATC	1 cut(s)	22
BsaHI	GRCGYC	2 cut(s)	80, 174
BsaI	GGTCTC	2 cut(s)	864, 1111
BsaWI	WCCGGW	3 cut(s)	128, 328, 566
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 463, 639, 1027
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	1050, 1091
Bse8I	GATNNNNATC	1 cut(s)	22
BseAI	TCCGGA	2 cut(s)	128, 328
BseCI	ATCGAT	1 cut(s)	303
BseGI	GGATG	3 cut(s)	200, 268, 763
BseJI	GATNNNNATC	1 cut(s)	22
BseLI	CCNNNNNNNGG	4 cut(s)	103, 463, 639, 1027
BseMII	CTCAG	1 cut(s)	553
BseNI	ACTGG	2 cut(s)	1050, 1091
BseRI	GAGGAG	3 cut(s)	115, 824, 827
BseXI	GCAGC	5 cut(s)	382, 428, 625, 628, 647
BseYI	CCCAGC	1 cut(s)	638
Bsh1236I	CGCG	2 cut(s)	141, 222
BshFI	GGCC	5 cut(s)	71, 194, 296, 493, 1015
BshNI	GGYRCC	1 cut(s)	914
BshVI	ATCGAT	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	425
BsiSI	CCGG	6 cut(s)	83, 129, 177, 209, 329, 567
BslFI	GGGAC	2 cut(s)	137, 694
BslI	CCNNNNNNNGG	4 cut(s)	103, 463, 639, 1027
BsmAI	GTCTC	4 cut(s)	384, 695, 864, 1111
BsmBI	CGTCTC	1 cut(s)	384
BsmFI	GGGAC	2 cut(s)	137, 694
BsmI	GAATGC	1 cut(s)	552
BsnI	GGCC	5 cut(s)	71, 194, 296, 493, 1015
Bso31I	GGTCTC	2 cut(s)	864, 1111
BsoBI	CYCGRG	1 cut(s)	425
Bsp119I	TTCGAA	1 cut(s)	556
Bsp1286I	GDGCHC	4 cut(s)	432, 577, 765, 1065
Bsp13I	TCCGGA	2 cut(s)	128, 328
Bsp143I	GATC	6 cut(s)	93, 167, 421, 481, 865, 1066
BspACI	CCGC	8 cut(s)	139, 222, 358, 633, 675, 822, 1049, 1102
BspANI	GGCC	5 cut(s)	71, 194, 296, 493, 1015
BspCNI	CTCAG	1 cut(s)	552
BspDI	ATCGAT	1 cut(s)	303
BspEI	TCCGGA	2 cut(s)	128, 328
BspFNI	CGCG	2 cut(s)	141, 222
BspLI	GGNNCC	5 cut(s)	152, 153, 169, 244, 916
BspOI	GCTAGC	1 cut(s)	623
BspPI	GGATC	4 cut(s)	88, 162, 175, 416
BspT104I	TTCGAA	1 cut(s)	556
BspT107I	GGYRCC	1 cut(s)	914
BspTNI	GGTCTC	2 cut(s)	864, 1111
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	1050, 1091
BssAI	RCCGGY	1 cut(s)	176
BssMI	GATC	6 cut(s)	93, 167, 421, 481, 865, 1066
BssNI	GRCGYC	2 cut(s)	80, 174
BstACI	GRCGYC	2 cut(s)	80, 174
BstAPI	GCANNNNNTGC	1 cut(s)	549
BstBAI	YACGTR	1 cut(s)	408
BstBI	TTCGAA	1 cut(s)	556
BstC8I	GCNNGC	4 cut(s)	119, 178, 340, 621
BstDEI	CTNAG	3 cut(s)	539, 654, 665
BstF5I	GGATG	3 cut(s)	200, 268, 763
BstFNI	CGCG	2 cut(s)	141, 222
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	2 cut(s)	222, 325
BstKTI	GATC	6 cut(s)	96, 170, 424, 484, 868, 1069
BstMAI	GTCTC	4 cut(s)	384, 695, 864, 1111
BstMBI	GATC	6 cut(s)	93, 167, 421, 481, 865, 1066
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 251, 260, 549, 629, 977
BstNSI	RCATGY	1 cut(s)	1135
BstUI	CGCG	2 cut(s)	141, 222
BstV1I	GCAGC	5 cut(s)	382, 428, 625, 628, 647
BstX2I	RGATCY	2 cut(s)	167, 481
BstYI	RGATCY	2 cut(s)	167, 481
Bsu15I	ATCGAT	1 cut(s)	303
BsuRI	GGCC	5 cut(s)	71, 194, 296, 493, 1015
BsuTUI	ATCGAT	1 cut(s)	303
BtsCI	GGATG	3 cut(s)	200, 268, 763
BtsIMutI	CAGTG	1 cut(s)	1043
Cac8I	GCNNGC	4 cut(s)	119, 178, 340, 621
CaiI	CAGNNNCTG	1 cut(s)	118
CfoI	GCGC	2 cut(s)	222, 325
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	3 cut(s)	70, 151, 1163
ClaI	ATCGAT	1 cut(s)	303
CseI	GACGC	3 cut(s)	88, 182, 401
Csp6I	GTAC	5 cut(s)	13, 187, 472, 694, 839
CviAII	CATG	6 cut(s)	442, 578, 593, 851, 1132, 1147
CviQI	GTAC	5 cut(s)	13, 187, 472, 694, 839
DdeI	CTNAG	3 cut(s)	539, 654, 665
DpnI	GATC	6 cut(s)	95, 169, 423, 483, 867, 1068
DpnII	GATC	6 cut(s)	93, 167, 421, 481, 865, 1066
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
EaeI	YGGCCR	2 cut(s)	192, 1013
EciI	GGCGGA	2 cut(s)	347, 1064
Ecl136II	GAGCTC	1 cut(s)	430
Eco147I	AGGCCT	2 cut(s)	296, 493
Eco24I	GRGCYC	4 cut(s)	432, 577, 765, 1065
Eco31I	GGTCTC	2 cut(s)	864, 1111
Eco47I	GGWCC	2 cut(s)	151, 1163
Eco53kI	GAGCTC	1 cut(s)	430
Eco72I	CACGTG	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	430
EcoO109I	RGGNCCY	2 cut(s)	70, 151
EcoRI	GAATTC	1 cut(s)	929
EcoT38I	GRGCYC	4 cut(s)	432, 577, 765, 1065
Esp3I	CGTCTC	1 cut(s)	384
FaeI	CATG	6 cut(s)	445, 581, 596, 854, 1135, 1150
FalI	AAGNNNNNCTT	2 cut(s)	969, 1001
FaqI	GGGAC	2 cut(s)	137, 694
FatI	CATG	6 cut(s)	441, 577, 592, 850, 1131, 1146
FauI	CCCGC	1 cut(s)	215
FauNDI	CATATG	1 cut(s)	459
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	6 cut(s)	396, 417, 614, 617, 633, 636
FokI	GGATG	3 cut(s)	187, 255, 770
FriOI	GRGCYC	4 cut(s)	432, 577, 765, 1065
Fsp4HI	GCNGC	6 cut(s)	396, 417, 614, 617, 633, 636
FspBI	CTAG	5 cut(s)	282, 485, 620, 698, 770
GlaI	GCGC	2 cut(s)	221, 324
GluI	GCNGC	6 cut(s)	396, 417, 614, 617, 633, 636
GsaI	CCCAGC	1 cut(s)	642
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	5 cut(s)	71, 194, 296, 493, 1015
HapII	CCGG	6 cut(s)	83, 129, 177, 209, 329, 567
HgaI	GACGC	3 cut(s)	88, 182, 401
HhaI	GCGC	2 cut(s)	222, 325
Hin1I	GRCGYC	2 cut(s)	80, 174
Hin1II	CATG	6 cut(s)	445, 581, 596, 854, 1135, 1150
Hin6I	GCGC	2 cut(s)	220, 323
HinP1I	GCGC	2 cut(s)	220, 323
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	956
HinfI	GANTC	3 cut(s)	285, 703, 1052
HpaII	CCGG	6 cut(s)	83, 129, 177, 209, 329, 567
Hpy166II	GTNNAC	5 cut(s)	34, 51, 405, 780, 1003
Hpy188I	TCNGA	7 cut(s)	167, 172, 481, 808, 963, 1071, 1126
Hpy188III	TCNNGA	8 cut(s)	129, 154, 329, 425, 517, 785, 869, 1161
Hpy8I	GTNNAC	5 cut(s)	34, 51, 405, 780, 1003
Hpy99I	CGWCG	5 cut(s)	55, 176, 437, 1027, 1181
HpyAV	CCTTC	6 cut(s)	107, 307, 665, 785, 943, 958
HpyCH4IV	ACGT	3 cut(s)	407, 512, 1108
HpyCH4V	TGCA	5 cut(s)	22, 552, 854, 1043, 1135
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 251, 260, 549, 629, 977
HpyF3I	CTNAG	3 cut(s)	539, 654, 665
HpySE526I	ACGT	3 cut(s)	407, 512, 1108
Hsp92I	GRCGYC	2 cut(s)	80, 174
Hsp92II	CATG	6 cut(s)	445, 581, 596, 854, 1135, 1150
HspAI	GCGC	2 cut(s)	220, 323
KflI	GGGWCCC	1 cut(s)	151
Kpn2I	TCCGGA	2 cut(s)	128, 328
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
Kzo9I	GATC	6 cut(s)	93, 167, 421, 481, 865, 1066
LmnI	GCTCC	3 cut(s)	131, 242, 320
Lsp1109I	GCAGC	5 cut(s)	382, 428, 625, 628, 647
MaeI	CTAG	5 cut(s)	282, 485, 620, 698, 770
MaeII	ACGT	3 cut(s)	407, 512, 1108
MaeIII	GTNAC	2 cut(s)	595, 981
MalI	GATC	6 cut(s)	95, 169, 423, 483, 867, 1068
MboI	GATC	6 cut(s)	93, 167, 421, 481, 865, 1066
MboII	GAAGA	5 cut(s)	242, 875, 952, 955, 958
MflI	RGATCY	2 cut(s)	167, 481
MhlI	GDGCHC	4 cut(s)	432, 577, 765, 1065
MlsI	TGGCCA	1 cut(s)	1015
MluCI	AATT	6 cut(s)	258, 603, 742, 830, 929, 1136
MluNI	TGGCCA	1 cut(s)	1015
MlyI	GAGTC	2 cut(s)	279, 697
MmeI	TCCRAC	1 cut(s)	195
Mox20I	TGGCCA	1 cut(s)	1015
MreI	CGCCGGCG	1 cut(s)	176
MroI	TCCGGA	2 cut(s)	128, 328
MroNI	GCCGGC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	1015
MseI	TTAA	3 cut(s)	468, 606, 660
Msp20I	TGGCCA	1 cut(s)	1015
MspA1I	CMGCKG	4 cut(s)	29, 638, 822, 1102
MspI	CCGG	6 cut(s)	83, 129, 177, 209, 329, 567
Mva1269I	GAATGC	1 cut(s)	552
MvnI	CGCG	2 cut(s)	141, 222
MwoI	GCNNNNNNNGC	6 cut(s)	68, 251, 260, 549, 629, 977
NaeI	GCCGGC	1 cut(s)	178
NdeI	CATATG	1 cut(s)	459
NdeII	GATC	6 cut(s)	93, 167, 421, 481, 865, 1066
NgoMIV	GCCGGC	1 cut(s)	176
NheI	GCTAGC	1 cut(s)	619
NlaIII	CATG	6 cut(s)	445, 581, 596, 854, 1135, 1150
NlaIV	GGNNCC	5 cut(s)	152, 153, 169, 244, 916
NmeAIII	GCCGAG	2 cut(s)	170, 386
NmuCI	GTSAC	1 cut(s)	595
NspI	RCATGY	1 cut(s)	1135
NspV	TTCGAA	1 cut(s)	556
PceI	AGGCCT	2 cut(s)	296, 493
PctI	GAATGC	1 cut(s)	552
PdiI	GCCGGC	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	1052
PflMI	CCANNNNNTGG	1 cut(s)	463
PkrI	GCNGC	6 cut(s)	397, 418, 615, 618, 634, 637
PleI	GAGTC	2 cut(s)	279, 697
PmaCI	CACGTG	1 cut(s)	408
PmlI	CACGTG	1 cut(s)	408
PpsI	GAGTC	2 cut(s)	279, 697
Ppu21I	YACGTR	1 cut(s)	408
PpuMI	RGGWCCY	1 cut(s)	151
PshBI	ATTAAT	1 cut(s)	606
PsiI	TTATAA	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	151
PspCI	CACGTG	1 cut(s)	408
PspFI	CCCAGC	1 cut(s)	638
PspN4I	GGNNCC	5 cut(s)	152, 153, 169, 244, 916
PspPI	GGNCC	3 cut(s)	70, 151, 1163
PspPPI	RGGWCCY	1 cut(s)	151
PstNI	CAGNNNCTG	1 cut(s)	118
PsuI	RGATCY	2 cut(s)	167, 481
PvuII	CAGCTG	2 cut(s)	29, 638
RsaI	GTAC	5 cut(s)	14, 188, 473, 695, 840
RsaNI	GTAC	5 cut(s)	13, 187, 472, 694, 839
SacI	GAGCTC	1 cut(s)	432
SalI	GTCGAC	1 cut(s)	49
SaqAI	TTAA	3 cut(s)	468, 606, 660
SatI	GCNGC	6 cut(s)	396, 417, 614, 617, 633, 636
Sau3AI	GATC	6 cut(s)	93, 167, 421, 481, 865, 1066
Sau96I	GGNCC	3 cut(s)	70, 151, 1163
SchI	GAGTC	2 cut(s)	279, 697
SduI	GDGCHC	4 cut(s)	432, 577, 765, 1065
SfuI	TTCGAA	1 cut(s)	556
SgrAI	CRCCGGYG	1 cut(s)	176
SinI	GGWCC	2 cut(s)	151, 1163
Sse9I	AATT	6 cut(s)	258, 603, 742, 830, 929, 1136
SseBI	AGGCCT	2 cut(s)	296, 493
SsiI	CCGC	8 cut(s)	139, 222, 358, 633, 675, 822, 1049, 1102
SspMI	CTAG	5 cut(s)	282, 485, 620, 698, 770
SstI	GAGCTC	1 cut(s)	432
StuI	AGGCCT	2 cut(s)	296, 493
TaiI	ACGT	3 cut(s)	410, 515, 1111
TaqI	TCGA	7 cut(s)	50, 303, 432, 556, 786, 868, 1065
TasI	AATT	6 cut(s)	258, 603, 742, 830, 929, 1136
TatI	WGTACW	2 cut(s)	186, 471
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	1 cut(s)	1052
Tru1I	TTAA	3 cut(s)	468, 606, 660
Tru9I	TTAA	3 cut(s)	468, 606, 660
TscAI	CASTG	1 cut(s)	1050
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	5 cut(s)	395, 416, 613, 616, 635
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	5 cut(s)	430, 516, 804, 977, 1081
TspGWI	ACGGA	5 cut(s)	30, 68, 193, 881, 1040
TspRI	CASTG	1 cut(s)	1050
Van91I	CCANNNNNTGG	1 cut(s)	463
VpaK11BI	GGWCC	2 cut(s)	151, 1163
VspI	ATTAAT	1 cut(s)	606
XapI	RAATTY	1 cut(s)	929
XceI	RCATGY	1 cut(s)	1135
XmiI	GTMKAC	1 cut(s)	50
XspI	CTAG	5 cut(s)	282, 485, 620, 698, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.