Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002636

Physical Location & Seq

Genomic Coordinates Forward (+)

26576486 .. 26582879

Gene Structure 6394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G70510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGATAGAATGTGTGGTTTCCGCTCGACGGAAGACTATTCGGAGAAAGCGACGTTGATGATGCCGTCCGATTATCAGTCTTTGATTTGTTCAACCACCGGAGACAATCAAAGACTGTTTGGATCCGACGAACTCGCTACCGCTTTGTCCTCGGAGTTGCTTCCGCGTATTCGAAAAGCTGAGGATAATTTCTCTCTTAGTGTCATCAAATCCAAAATCGCTTCTCATCCTTTGTATCCTCGCTTACTCCAAACCTACATCGATTGCCAAAAGGTGGGAGCGCCTATGGAAATAGCGTGTATATTGGAAGAGATTCAGCGAGAGAACCATGTGTACAAGAGAGATGTTGCTCCATTATCTTGCTTTGGAGCTGATCCTGAGCTTGATGAATTCATGGAAACCTACTGTGATATATTGGTTAAATACAAAACCGATCTTGCGAGGCCGTTCGACGAGGCTACAACTTTCATAAACAAGATTGAAATGCAGCTTCAGAACTTGTGCACTGGTCCAGCGTCTGCTACAGCTCTTTCAGATGATGGTGCGGTTTCATCTGACGAGGAACTGAGAGAAGATGATGACATAGCAGCGGATGACAGCCAACAAAGAAGCAATGACCGCGATCTGAAGGACCAGCTACTACGCAAATTTGGTAGCCATATCAGTTCATTGAAACTCGAGTTCTCTAAAAAGAAGAAGAAAGGGAAGCTACCAAGAGAAGCAAGACAAGCGTTGCTCGATTGGTGGAATGTTCATAATAAATGGCCTTACCCTACTGAAGGCGACAAAATATCTCTGGCTGAAGAAACAGGTTTGGATCAAAAACAAATCAACAATTGGTTTATAAACCAAAGGAAACGCCATTGGAAGCCTTCGGAGAACATGCCGTTTGATATGATGGACGATTCTAATGAAACATTCTTTACCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010073 GO:0010093 GO:0010094 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

310

Amino Acids

35.64

Weight (kDa)

4.91

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	69 - 110	1.2e-21	KNOX1 domain
KNOX2	PF03791	122 - 168	1.1e-25	KNOX2 domain
ELK	PF03789	208 - 229	4.9e-09	ELK domain
Homeobox_KN	PF05920	248 - 287	1.3e-18	Homeobox KN domain
Homeodomain	PF00046	253 - 288	1.3e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23380 AT1G23380 AT1G70510 AT1G70510
fragaria_vesca	FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_5g05530 FvH4_5g05530
malus_domestica	MD06G1171700.v1.1 MD13G1095800.v1.1 MD14G1177200.v1.1 MD16G1097200.v1.1
prunus_persica	Prupe.1G249600_v2.0.a1 Prupe.5G171100_v2.0.a1
pyrus_communis	pycom06g15280 pycom13g08340 pycom14g14800 pycom16g08280
rosa_chinensis	RchiOBHm_Chr4g0433571 RchiOBHm_Chr7g0193251
rosa_laevigata	RLG00000004283 RLG00000006743
rosa_multiflora	Rmu_sc0017266.1_g000003
rosa_roxburghii	Rroxscaffold_3G00262250 Rroxscaffold_5G00375060
rosa_rugosa	Rorug04G0269800 Rorug07G0008500 Rorug07G0008600
rosa_samantha	Rh4AG324700 Rh4BG332400 Rh4CG347700 Rh4DG328800 Rh7AG134100 Rh7BG135100 Rh7CG138100 Rh7DG136100
rosa_wichuraiana	Rw4G028100 Rw7G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	845
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccBSI	CCGCTC	1 cut(s)	24
AccII	CGCG	2 cut(s)	166, 621
AciI	CCGC	6 cut(s)	22, 141, 164, 545, 590, 619
AclWI	GGATC	4 cut(s)	117, 130, 368, 825
AcsI	RAATTY	2 cut(s)	389, 647
AcuI	CTGAAG	4 cut(s)	476, 647, 798, 822
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	3 cut(s)	28, 274, 779
AgsI	TTSAA	3 cut(s)	93, 482, 673
AluBI	AGCT	7 cut(s)	179, 371, 382, 490, 527, 637, 709
AluI	AGCT	7 cut(s)	179, 371, 382, 490, 527, 637, 709
Alw21I	GWGCWC	1 cut(s)	506
Alw26I	GTCTC	1 cut(s)	96
Alw44I	GTGCAC	1 cut(s)	502
AlwI	GGATC	4 cut(s)	117, 130, 368, 825
AlwNI	CAGNNNCTG	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	677
AoxI	GGCC	2 cut(s)	443, 764
ApaLI	GTGCAC	1 cut(s)	502
ApeKI	GCWGC	2 cut(s)	487, 587
ApoI	RAATTY	2 cut(s)	389, 647
Asp700I	GAANNNNTTC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	2 cut(s)	509, 631
AsuII	TTCGAA	1 cut(s)	172
AvaI	CYCGRG	1 cut(s)	677
AvaII	GGWCC	2 cut(s)	509, 631
BaeGI	GKGCMC	1 cut(s)	506
BamHI	GGATCC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	506
BbvCI	CCTCAGC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	499, 599
BccI	CCATC	2 cut(s)	533, 892
BceAI	ACGGC	3 cut(s)	49, 430, 871
BciVI	GTATCC	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	522
BfoI	RGCGCY	1 cut(s)	284
BfuI	GTATCC	1 cut(s)	246
BisI	GCNGC	2 cut(s)	488, 588
BlsI	GCNGC	2 cut(s)	489, 589
Bme18I	GGWCC	2 cut(s)	509, 631
BmeT110I	CYCGRG	1 cut(s)	677
BmgT120I	GGNCC	2 cut(s)	509, 631
BmiI	GGNNCC	1 cut(s)	124
BmsI	GCATC	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	39
Bpu10I	CCTNAGC	2 cut(s)	180, 378
Bpu14I	TTCGAA	1 cut(s)	172
Bsa29I	ATCGAT	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 274, 779
Bse1I	ACTGG	1 cut(s)	511
Bse3DI	GCAATG	1 cut(s)	619
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	2 cut(s)	226, 598
BseLI	CCNNNNNNNGG	3 cut(s)	28, 274, 779
BseMI	GCAATG	1 cut(s)	619
BseMII	CTCAG	3 cut(s)	171, 369, 557
BseNI	ACTGG	1 cut(s)	511
BseSI	GKGCMC	1 cut(s)	506
BseXI	GCAGC	2 cut(s)	499, 599
Bsh1236I	CGCG	2 cut(s)	166, 621
BshFI	GGCC	2 cut(s)	445, 766
BshVI	ATCGAT	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	506
BsiHKCI	CYCGRG	1 cut(s)	677
BsiSI	CCGG	1 cut(s)	99
BslI	CCNNNNNNNGG	3 cut(s)	28, 274, 779
BsmAI	GTCTC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	445, 766
BsoBI	CYCGRG	1 cut(s)	677
Bsp119I	TTCGAA	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp1407I	TGTACA	1 cut(s)	333
Bsp143I	GATC	5 cut(s)	122, 373, 433, 622, 817
BspACI	CCGC	6 cut(s)	22, 141, 164, 545, 590, 619
BspANI	GGCC	2 cut(s)	445, 766
BspCNI	CTCAG	3 cut(s)	172, 370, 558
BspDI	ATCGAT	1 cut(s)	261
BspFNI	CGCG	2 cut(s)	166, 621
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	4 cut(s)	117, 130, 368, 825
BspT104I	TTCGAA	1 cut(s)	172
BsrBI	CCGCTC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	619
BsrGI	TGTACA	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	511
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	5 cut(s)	122, 373, 433, 622, 817
Bst4CI	ACNGT	2 cut(s)	117, 407
Bst6I	CTCTTC	1 cut(s)	303
BstAUI	TGTACA	1 cut(s)	333
BstBI	TTCGAA	1 cut(s)	172
BstDEI	CTNAG	4 cut(s)	180, 197, 378, 566
BstENI	CCTNNNNNAGG	1 cut(s)	777
BstF5I	GGATG	2 cut(s)	226, 598
BstFNI	CGCG	2 cut(s)	166, 621
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	5 cut(s)	125, 376, 436, 625, 820
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	5 cut(s)	122, 373, 433, 622, 817
BstMWI	GCNNNNNNNGC	2 cut(s)	618, 728
BstNSI	RCATGY	1 cut(s)	886
BstSFI	CTRYAG	1 cut(s)	522
BstSLI	GKGCMC	1 cut(s)	506
BstUI	CGCG	2 cut(s)	166, 621
BstV1I	GCAGC	2 cut(s)	499, 599
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
Bsu15I	ATCGAT	1 cut(s)	261
BsuI	GTATCC	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	445, 766
BsuTUI	ATCGAT	1 cut(s)	261
BtsCI	GGATG	2 cut(s)	226, 598
BtsIMutI	CAGTG	1 cut(s)	504
CaiI	CAGNNNCTG	1 cut(s)	518
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	509, 631
ClaI	ATCGAT	1 cut(s)	261
CseI	GACGC	1 cut(s)	504
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	3 cut(s)	329, 394, 883
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	4 cut(s)	180, 197, 378, 566
DpnI	GATC	5 cut(s)	124, 375, 435, 624, 819
DpnII	GATC	5 cut(s)	122, 373, 433, 622, 817
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	509, 631
Eco57I	CTGAAG	4 cut(s)	476, 647, 798, 822
Eco88I	CYCGRG	1 cut(s)	677
EcoNI	CCTNNNNNAGG	1 cut(s)	777
EcoRI	GAATTC	1 cut(s)	389
FaeI	CATG	3 cut(s)	332, 397, 886
FatI	CATG	3 cut(s)	328, 393, 882
Fnu4HI	GCNGC	2 cut(s)	488, 588
FokI	GGATG	2 cut(s)	213, 605
Fsp4HI	GCNGC	2 cut(s)	488, 588
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	2 cut(s)	488, 588
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	445, 766
HapII	CCGG	1 cut(s)	99
HgaI	GACGC	1 cut(s)	504
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	3 cut(s)	332, 397, 886
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HinfI	GANTC	2 cut(s)	313, 905
HpaII	CCGG	1 cut(s)	99
Hpy166II	GTNNAC	2 cut(s)	334, 504
Hpy188I	TCNGA	9 cut(s)	43, 70, 127, 154, 495, 535, 556, 627, 877
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	2 cut(s)	334, 504
Hpy99I	CGWCG	4 cut(s)	31, 55, 131, 455
HpyAV	CCTTC	3 cut(s)	622, 773, 882
HpyCH4III	ACNGT	2 cut(s)	117, 407
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	487, 504
HpyF10VI	GCNNNNNNNGC	2 cut(s)	618, 728
HpyF3I	CTNAG	4 cut(s)	180, 197, 378, 566
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	3 cut(s)	332, 397, 886
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	5 cut(s)	122, 373, 433, 622, 817
LmnI	GCTCC	3 cut(s)	278, 355, 368
LpnPI	CCDG	7 cut(s)	112, 390, 492, 525, 647, 782, 795
Lsp1109I	GCAGC	2 cut(s)	499, 599
LweI	GCATC	1 cut(s)	51
MaeII	ACGT	1 cut(s)	53
MalI	GATC	5 cut(s)	124, 375, 435, 624, 819
MbiI	CCGCTC	1 cut(s)	24
MboI	GATC	5 cut(s)	122, 373, 433, 622, 817
MboII	GAAGA	6 cut(s)	44, 320, 584, 706, 709, 815
MfeI	CAATTG	1 cut(s)	835
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	506
MluCI	AATT	4 cut(s)	187, 389, 647, 835
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	6 cut(s)	160, 175, 249, 435, 448, 553
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	835
MvnI	CGCG	2 cut(s)	166, 621
MwoI	GCNNNNNNNGC	2 cut(s)	618, 728
NdeII	GATC	5 cut(s)	122, 373, 433, 622, 817
NlaIII	CATG	3 cut(s)	332, 397, 886
NlaIV	GGNNCC	1 cut(s)	124
NspI	RCATGY	1 cut(s)	886
NspV	TTCGAA	1 cut(s)	172
PaeR7I	CTCGAG	1 cut(s)	677
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	313, 905
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	489, 589
PsiI	TTATAA	1 cut(s)	845
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	2 cut(s)	509, 631
PspXI	VCTCGAGB	1 cut(s)	677
PsrI	GAACNNNNNNTAC	2 cut(s)	317, 349
PstNI	CAGNNNCTG	1 cut(s)	518
PsuI	RGATCY	1 cut(s)	122
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	2 cut(s)	488, 588
Sau3AI	GATC	5 cut(s)	122, 373, 433, 622, 817
Sau96I	GGNCC	2 cut(s)	509, 631
SduI	GDGCHC	1 cut(s)	506
SfaNI	GCATC	1 cut(s)	51
SfcI	CTRYAG	1 cut(s)	522
Sfr274I	CTCGAG	1 cut(s)	677
SfuI	TTCGAA	1 cut(s)	172
SinI	GGWCC	2 cut(s)	509, 631
SlaI	CTCGAG	1 cut(s)	677
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	4 cut(s)	187, 389, 647, 835
SsiI	CCGC	6 cut(s)	22, 141, 164, 545, 590, 619
TaaI	ACNGT	2 cut(s)	117, 407
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	6 cut(s)	26, 172, 261, 450, 678, 738
TasI	AATT	4 cut(s)	187, 389, 647, 835
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	2 cut(s)	313, 905
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	511
TseI	GCWGC	2 cut(s)	487, 587
TspDTI	ATGAA	7 cut(s)	382, 402, 457, 540, 657, 743, 927
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	511
Van91I	CCANNNNNTGG	1 cut(s)	274
VneI	GTGCAC	1 cut(s)	502
VpaK11BI	GGWCC	2 cut(s)	509, 631
XagI	CCTNNNNNAGG	1 cut(s)	777
XapI	RAATTY	2 cut(s)	389, 647
XceI	RCATGY	1 cut(s)	886
XhoI	CTCGAG	1 cut(s)	677
XmnI	GAANNNNTTC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.