Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002636

Physical Location & Seq

Genomic Coordinates Reverse (-)

44298712 .. 44301011

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0269800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGACTACCACTGCTCTCCGCCCCTCCCTCCCTCCATCTCCTCAATCACTCGCTCCCGGCGCGTGTCCTCACCGCCAACCTCTCTCCCACTCCCACTGCCACCTCACCTTCCCAACCCTCCACAGCTCCACCCACACTCCACTCCTCCGCTCCTCCCATCACCGCCATCCATCTCCGGTCGCCATGTCCTCCGATTCCGGCCGATCAGTCTCTCCGGCGACTCAACCCCAACCGATCGAGCTCAACGACGAGTCCGAATTCGAAACCATCGTCTCGCCCGACGGTTACATCTCCATCTGCGGCTTCGGCTCTCTCCTCTCCGAGAGAAGCGCGAGGAGTACATTTCCGGAGCTGATCAACTTCAGAGTGGCGCGGTTGAACGGATTCCGGCGAGTCTTCGCTCACATGGCTCCGATTTTCTTCGAGCGTGGCATTGCCAAACCTGAAACCAAGGAGATTTCGAGTTTGAGTGTGGAGCCTTATGAAGGCGAAAGCCTTATAGTGACAGTGTTTGAGATTGAAAAATCGGAGATTCCGGCTTTTATCAAGAGGGAGCCTGAATTTCGATTCCTAGCGGTTCTGCCTGAAAGCCTTGATGGGAAGCCATTTGATAATCGAGCGGTGCTTTGTGCTCGTTATAGTGATGAAGAATTTTTCAGAGTCAGATGCAAAGGAAGTAAGGAAATGTATTTTGAGCTATTTGGGCGATATGACATAGATAAGATTTGGAGGGATGATATCTTACCTTGCCGAACTTACCTTCGTCACTGTGTGTTAGCAGCAAAGAATCTCAACGATATAGCATACAACAACTTCTTGGATCACACTTTCCTTGGAGACCGTAAAACAACCATCCGCAAGTACTTGGCTACAACAGGTTCGGGAATCATGGAAGAAGAGCCTCCGGAATCCCTCAAGATCCGTTACGGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

311

Amino Acids

35.19

Weight (kDa)

6.64

Isoelectric Point (pI)

61.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23380 AT1G23380 AT1G70510 AT1G70510
fragaria_vesca	FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_5g05530 FvH4_5g05530
malus_domestica	MD06G1171700.v1.1 MD13G1095800.v1.1 MD14G1177200.v1.1 MD16G1097200.v1.1
prunus_persica	Prupe.1G249600_v2.0.a1 Prupe.5G171100_v2.0.a1
pyrus_communis	pycom06g15280 pycom13g08340 pycom14g14800 pycom16g08280
rosa_chinensis	RchiOBHm_Chr4g0433571 RchiOBHm_Chr7g0193251
rosa_laevigata	RLG00000004283 RLG00000006743
rosa_multiflora	Rmu_sc0017266.1_g000003
rosa_roxburghii	Rroxscaffold_3G00262250 Rroxscaffold_5G00375060
rosa_rugosa	Rorug04G0269800 Rorug07G0008500 Rorug07G0008600
rosa_samantha	Rh4AG324700 Rh4BG332400 Rh4CG347700 Rh4DG328800 Rh7AG134100 Rh7BG135100 Rh7CG138100 Rh7DG136100
rosa_wichuraiana	Rw4G028100 Rw7G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	150, 620
AccII	CGCG	3 cut(s)	62, 332, 373
AccIII	TCCGGA	2 cut(s)	346, 904
AciI	CCGC	9 cut(s)	19, 73, 148, 163, 300, 373, 575, 620, 856
AclWI	GGATC	2 cut(s)	828, 913
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	3 cut(s)	257, 560, 650
AcuI	CTGAAG	1 cut(s)	346
AdeI	CACNNNGTG	1 cut(s)	772
AfaI	GTAC	2 cut(s)	340, 863
AfiI	CCNNNNNNNGG	1 cut(s)	485
AgsI	TTSAA	2 cut(s)	379, 521
AluBI	AGCT	4 cut(s)	126, 241, 352, 697
AluI	AGCT	4 cut(s)	126, 241, 352, 697
Alw21I	GWGCWC	2 cut(s)	243, 634
Alw26I	GTCTC	3 cut(s)	214, 277, 831
AlwI	GGATC	2 cut(s)	828, 913
Aor13HI	TCCGGA	2 cut(s)	346, 904
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	779
ApoI	RAATTY	3 cut(s)	257, 560, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
Asp700I	GAANNNNTTC	1 cut(s)	383
AspLEI	GCGC	3 cut(s)	62, 332, 373
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	3 cut(s)	62, 97, 152
AsuII	TTCGAA	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	388
Bbv12I	GWGCWC	2 cut(s)	243, 634
BbvI	GCAGC	1 cut(s)	791
BccI	CCATC	8 cut(s)	43, 165, 174, 178, 275, 302, 590, 860
BclI	TGATCA	1 cut(s)	354
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	3 cut(s)	214, 277, 831
BfaI	CTAG	1 cut(s)	572
BisI	GCNGC	2 cut(s)	301, 780
BlsI	GCNGC	2 cut(s)	302, 781
BmcAI	AGTACT	1 cut(s)	863
Bme1390I	CCNGG	1 cut(s)	57
BmiI	GGNNCC	3 cut(s)	411, 477, 555
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	656
BpiI	GAAGAC	1 cut(s)	388
Bpu14I	TTCGAA	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	899
BpuMI	CCSGG	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	831
BsaJI	CCNNGG	2 cut(s)	450, 832
BsaWI	WCCGGW	3 cut(s)	175, 346, 904
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse3DI	GCAATG	1 cut(s)	432
BseAI	TCCGGA	2 cut(s)	346, 904
BseDI	CCNNGG	2 cut(s)	450, 832
BseGI	GGATG	3 cut(s)	166, 739, 852
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMI	GCAATG	1 cut(s)	432
BseRI	GAGGAG	5 cut(s)	30, 134, 142, 305, 349
BseX3I	CGGCCG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	791
Bsh1236I	CGCG	3 cut(s)	62, 332, 373
Bsh1285I	CGRYCG	3 cut(s)	180, 202, 237
BshFI	GGCC	1 cut(s)	201
BsiEI	CGRYCG	3 cut(s)	180, 202, 237
BsiHKAI	GWGCWC	2 cut(s)	243, 634
BsiSI	CCGG	8 cut(s)	57, 176, 198, 215, 347, 388, 536, 905
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmAI	GTCTC	3 cut(s)	214, 277, 831
BsmBI	CGTCTC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	831
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	243, 634
Bsp13I	TCCGGA	2 cut(s)	346, 904
Bsp143I	GATC	5 cut(s)	203, 234, 354, 820, 918
BspACI	CCGC	9 cut(s)	19, 73, 148, 163, 300, 373, 575, 620, 856
BspANI	GGCC	1 cut(s)	201
BspEI	TCCGGA	2 cut(s)	346, 904
BspFNI	CGCG	3 cut(s)	62, 332, 373
BspLI	GGNNCC	3 cut(s)	411, 477, 555
BspPI	GGATC	2 cut(s)	828, 913
BspQI	GCTCTTC	1 cut(s)	891
BspT104I	TTCGAA	1 cut(s)	261
BspTNI	GGTCTC	1 cut(s)	831
BsrBI	CCGCTC	2 cut(s)	150, 620
BsrDI	GCAATG	1 cut(s)	432
BssECI	CCNNGG	2 cut(s)	450, 832
BssMI	GATC	5 cut(s)	203, 234, 354, 820, 918
BssT1I	CCWWGG	2 cut(s)	450, 832
Bst4CI	ACNGT	5 cut(s)	284, 508, 770, 842, 929
Bst6I	CTCTTC	1 cut(s)	891
BstBI	TTCGAA	1 cut(s)	261
BstENI	CCTNNNNNAGG	1 cut(s)	483
BstF5I	GGATG	3 cut(s)	166, 739, 852
BstFNI	CGCG	3 cut(s)	62, 332, 373
BstHHI	GCGC	3 cut(s)	62, 332, 373
BstKTI	GATC	5 cut(s)	206, 237, 357, 823, 921
BstMAI	GTCTC	3 cut(s)	214, 277, 831
BstMBI	GATC	5 cut(s)	203, 234, 354, 820, 918
BstMCI	CGRYCG	3 cut(s)	180, 202, 237
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 306, 407, 703
BstSCI	CCNGG	1 cut(s)	55
BstUI	CGCG	3 cut(s)	62, 332, 373
BstV1I	GCAGC	1 cut(s)	791
BstV2I	GAAGAC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	918
BstYI	RGATCY	1 cut(s)	918
BstZI	CGGCCG	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	201
BtsCI	GGATG	3 cut(s)	166, 739, 852
BtsI	GCAGTG	2 cut(s)	9, 94
BtsIMutI	CAGTG	4 cut(s)	9, 94, 513, 766
CfoI	GCGC	3 cut(s)	62, 332, 373
Csp6I	GTAC	2 cut(s)	339, 862
CviAII	CATG	3 cut(s)	184, 406, 889
CviQI	GTAC	2 cut(s)	339, 862
DpnI	GATC	5 cut(s)	205, 236, 356, 822, 920
DpnII	GATC	5 cut(s)	203, 234, 354, 820, 918
DraIII	CACNNNGTG	1 cut(s)	772
EaeI	YGGCCR	1 cut(s)	199
EagI	CGGCCG	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	891
EarI	CTCTTC	1 cut(s)	891
EciI	GGCGGA	1 cut(s)	8
Ecl136II	GAGCTC	1 cut(s)	241
EclXI	CGGCCG	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	450, 832
Eco24I	GRGCYC	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	831
Eco32I	GATATC	1 cut(s)	739
Eco52I	CGGCCG	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	241
EcoNI	CCTNNNNNAGG	1 cut(s)	483
EcoRI	GAATTC	1 cut(s)	257
EcoRV	GATATC	1 cut(s)	739
EcoT14I	CCWWGG	2 cut(s)	450, 832
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	2 cut(s)	450, 832
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	3 cut(s)	187, 409, 892
FatI	CATG	3 cut(s)	183, 405, 888
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	301, 780
FokI	GGATG	3 cut(s)	153, 746, 839
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	2 cut(s)	301, 780
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	3 cut(s)	61, 331, 372
GluI	GCNGC	2 cut(s)	301, 780
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	8 cut(s)	57, 176, 198, 215, 347, 388, 536, 905
HhaI	GCGC	3 cut(s)	62, 332, 373
Hin1II	CATG	3 cut(s)	187, 409, 892
Hin6I	GCGC	3 cut(s)	60, 330, 371
HinP1I	GCGC	3 cut(s)	60, 330, 371
HpaII	CCGG	8 cut(s)	57, 176, 198, 215, 347, 388, 536, 905
HphI	GGTGA	3 cut(s)	62, 97, 152
Hpy188I	TCNGA	8 cut(s)	193, 256, 322, 365, 414, 529, 659, 665
Hpy188III	TCNNGA	5 cut(s)	347, 547, 882, 905, 916
Hpy99I	CGWCG	2 cut(s)	251, 284
HpyAV	CCTTC	3 cut(s)	118, 479, 770
HpyCH4III	ACNGT	5 cut(s)	284, 508, 770, 842, 929
HpyCH4V	TGCA	1 cut(s)	669
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 306, 407, 703
Hsp92II	CATG	3 cut(s)	187, 409, 892
HspAI	GCGC	3 cut(s)	60, 330, 371
Kpn2I	TCCGGA	2 cut(s)	346, 904
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	5 cut(s)	203, 234, 354, 820, 918
LguI	GCTCTTC	1 cut(s)	891
LmnI	GCTCC	7 cut(s)	58, 131, 155, 349, 415, 475, 553
Lsp1109I	GCAGC	1 cut(s)	791
LweI	GCATC	1 cut(s)	656
MaeI	CTAG	1 cut(s)	572
MaeIII	GTNAC	4 cut(s)	284, 502, 764, 923
MalI	GATC	5 cut(s)	205, 236, 356, 822, 920
MbiI	CCGCTC	2 cut(s)	150, 620
MboI	GATC	5 cut(s)	203, 234, 354, 820, 918
MboII	GAAGA	5 cut(s)	388, 412, 659, 905, 908
MflI	RGATCY	1 cut(s)	918
MhlI	GDGCHC	2 cut(s)	243, 634
MluCI	AATT	3 cut(s)	257, 560, 650
MlyI	GAGTC	4 cut(s)	214, 260, 402, 669
MroI	TCCGGA	2 cut(s)	346, 904
MroXI	GAANNNNTTC	1 cut(s)	383
MseI	TTAA	1 cut(s)	934
MspI	CCGG	8 cut(s)	57, 176, 198, 215, 347, 388, 536, 905
MspR9I	CCNGG	1 cut(s)	57
MvnI	CGCG	3 cut(s)	62, 332, 373
MwoI	GCNNNNNNNGC	4 cut(s)	59, 306, 407, 703
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	5 cut(s)	203, 234, 354, 820, 918
NlaIII	CATG	3 cut(s)	187, 409, 892
NlaIV	GGNNCC	3 cut(s)	411, 477, 555
NmuCI	GTSAC	2 cut(s)	502, 764
NspV	TTCGAA	1 cut(s)	261
PciSI	GCTCTTC	1 cut(s)	891
PcsI	WCGNNNNNNNCGW	4 cut(s)	243, 252, 267, 276
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	7 cut(s)	194, 384, 532, 567, 787, 885, 908
PkrI	GCNGC	2 cut(s)	302, 781
Ple19I	CGATCG	1 cut(s)	237
PleI	GAGTC	4 cut(s)	214, 259, 401, 668
PpsI	GAGTC	4 cut(s)	214, 259, 401, 668
Psp124BI	GAGCTC	1 cut(s)	243
PspN4I	GGNNCC	3 cut(s)	411, 477, 555
PsuI	RGATCY	1 cut(s)	918
PvuI	CGATCG	1 cut(s)	237
RsaI	GTAC	2 cut(s)	340, 863
RsaNI	GTAC	2 cut(s)	339, 862
SacI	GAGCTC	1 cut(s)	243
SapI	GCTCTTC	1 cut(s)	891
SaqAI	TTAA	1 cut(s)	934
SatI	GCNGC	2 cut(s)	301, 780
Sau3AI	GATC	5 cut(s)	203, 234, 354, 820, 918
ScaI	AGTACT	1 cut(s)	863
SchI	GAGTC	4 cut(s)	214, 260, 402, 669
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	243, 634
SfaNI	GCATC	1 cut(s)	656
SfuI	TTCGAA	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	914
SmoI	CTYRAG	1 cut(s)	914
Sse9I	AATT	3 cut(s)	257, 560, 650
SsiI	CCGC	9 cut(s)	19, 73, 148, 163, 300, 373, 575, 620, 856
SspMI	CTAG	1 cut(s)	572
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	2 cut(s)	450, 832
TaaI	ACNGT	5 cut(s)	284, 508, 770, 842, 929
TaqI	TCGA	6 cut(s)	237, 261, 423, 461, 565, 616
TasI	AATT	3 cut(s)	257, 560, 650
TatI	WGTACW	2 cut(s)	338, 861
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	7 cut(s)	194, 384, 532, 567, 787, 885, 908
Tru1I	TTAA	1 cut(s)	934
Tru9I	TTAA	1 cut(s)	934
TscAI	CASTG	4 cut(s)	16, 101, 513, 773
TseFI	GTSAC	2 cut(s)	502, 764
TseI	GCWGC	1 cut(s)	779
Tsp45I	GTSAC	2 cut(s)	502, 764
TspDTI	ATGAA	2 cut(s)	498, 660
TspGWI	ACGGA	2 cut(s)	396, 911
TspRI	CASTG	4 cut(s)	16, 101, 513, 773
XagI	CCTNNNNNAGG	1 cut(s)	483
XapI	RAATTY	3 cut(s)	257, 560, 650
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	1 cut(s)	572
ZrmI	AGTACT	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.