Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002636

Physical Location & Seq

Genomic Coordinates Reverse (-)

3243882 .. 3250194

Gene Structure 6313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05530.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGAAGAACTCTACGGTTTCAGTACTGGAAATTCTGATCATTACTACTCTTCTTCTTCAATGGCTATGCCACCGGAACACTTACCACTTTCGGAGTACTACACGAGCTTCGAGCCTCTATCGGCGGTTGTACCCGGAAGTAGCTCCGACCCGGTGTATTATTACTCGGGTTCTAATTCGTCCACCGTGTCCGATTGTGTTTCGGTTGCGGTGGCAGGAAATCAACGAGGAGGAGAAGAGGTCTCGTGTACTGATTTTAATGCTAAGATCGCTTCTCATCCTCTCTACCCTAACCTACTTCAGGCCTACATCGATTGCCAAAAGGTTGGAGCGCCGCCGGAATTAGCCCATATTTTGGAGAAAATCCGGCGAGAAAGTGATCAGCTCAGTAGGAGAACCGTTGGTTCGACTTGCATGGGTGTCGATCCTGAGCTCGATGAGTTTATGGAAACCTACTGTGGTATTTTGTTGAAGTACAAATCGGATCTGACAAAGCCGTTCAACGAAGCAATCACCTTCTTGAACAGCATGGAGACGCAGCTCAACAATCTCGCGGGCGCCAATACCACCAAAGGTGTGTTGATGCAAACAAGGGACTCTAGGATTAGTGGAATGATGAAGCTTAATTACTGGTGTTTTGATCATGAAGATGATGCTCCCCCAGGTAATTCTTCTGACTACGAAGACATGAGTGGAGGAGAGATTGATGTACAGGACTCTGATCATCAGCAAAGAAATGTAAATCATGAATTGAAGGACAAGCTGTTGCGTAAATACAGTGGTTATATAAGCACTCTGAAGCAGGAGTTTTCTCAGAAAAAGAAGAAGGGAAAGCTGCCAAAAGATGCTAAACAAATCCTTGCGGATTGGTGGAACCTTCACTATAAATGGCCATATCCAACGGTACGTGATTCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0010073 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048507 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

307

Amino Acids

34.48

Weight (kDa)

5.14

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	88 - 127	1.6e-20	KNOX1 domain
KNOX2	PF03791	138 - 184	2.9e-23	KNOX2 domain
ELK	PF03789	223 - 244	1.9e-11	ELK domain
Homeobox_KN	PF05920	263 - 302	3.8e-18	Homeobox KN domain
Homeodomain	PF00046	270 - 303	4.7e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23380 AT1G23380 AT1G70510 AT1G70510
fragaria_vesca	FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_5g05530 FvH4_5g05530
malus_domestica	MD06G1171700.v1.1 MD13G1095800.v1.1 MD14G1177200.v1.1 MD16G1097200.v1.1
prunus_persica	Prupe.1G249600_v2.0.a1 Prupe.5G171100_v2.0.a1
pyrus_communis	pycom06g15280 pycom13g08340 pycom14g14800 pycom16g08280
rosa_chinensis	RchiOBHm_Chr4g0433571 RchiOBHm_Chr7g0193251
rosa_laevigata	RLG00000004283 RLG00000006743
rosa_multiflora	Rmu_sc0017266.1_g000003
rosa_roxburghii	Rroxscaffold_3G00262250 Rroxscaffold_5G00375060
rosa_rugosa	Rorug04G0269800 Rorug07G0008500 Rorug07G0008600
rosa_samantha	Rh4AG324700 Rh4BG332400 Rh4CG347700 Rh4DG328800 Rh7AG134100 Rh7BG135100 Rh7CG138100 Rh7DG136100
rosa_wichuraiana	Rw4G028100 Rw7G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	557
AccB7I	CCANNNNNTGG	1 cut(s)	355
AccII	CGCG	1 cut(s)	554
AciI	CCGC	5 cut(s)	125, 209, 335, 554, 863
AclWI	GGATC	2 cut(s)	419, 492
AcoI	YGGCCR	1 cut(s)	890
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	2 cut(s)	284, 818
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	7 cut(s)	25, 98, 132, 250, 476, 711, 906
AfiI	CCNNNNNNNGG	2 cut(s)	301, 355
AgsI	TTSAA	5 cut(s)	60, 472, 502, 523, 754
AjnI	CCWGG	1 cut(s)	661
AluBI	AGCT	8 cut(s)	108, 144, 385, 433, 541, 622, 763, 835
AluI	AGCT	8 cut(s)	108, 144, 385, 433, 541, 622, 763, 835
Alw21I	GWGCWC	1 cut(s)	435
Alw26I	GTCTC	2 cut(s)	247, 527
AlwI	GGATC	2 cut(s)	419, 492
Ama87I	CYCGRG	1 cut(s)	166
AoxI	GGCC	2 cut(s)	303, 890
ApeKI	GCWGC	2 cut(s)	538, 835
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	2 cut(s)	334, 560
AsuC2I	CCSGG	2 cut(s)	135, 152
AsuHPI	GGTGA	1 cut(s)	505
AvaI	CYCGRG	1 cut(s)	166
BalI	TGGCCA	1 cut(s)	892
BanI	GGYRCC	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	435
BarI	GAAGNNNNNNTAC	2 cut(s)	611, 643
BauI	CACGAG	2 cut(s)	103, 244
BbsI	GAAGAC	1 cut(s)	690
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	2 cut(s)	550, 822
BceAI	ACGGC	1 cut(s)	481
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BciT130I	CCWGG	1 cut(s)	663
BclI	TGATCA	4 cut(s)	37, 379, 640, 721
BcnI	CCSGG	2 cut(s)	135, 152
BcoDI	GTCTC	2 cut(s)	247, 527
BfaI	CTAG	1 cut(s)	600
BfoI	RGCGCY	2 cut(s)	335, 561
BisI	GCNGC	3 cut(s)	335, 539, 836
BlsI	GCNGC	3 cut(s)	336, 540, 837
BmcAI	AGTACT	2 cut(s)	25, 98
Bme1390I	CCNGG	3 cut(s)	135, 152, 663
BmeT110I	CYCGRG	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	559, 875
BmrFI	CCNGG	3 cut(s)	135, 152, 663
BmsI	GCATC	3 cut(s)	573, 643, 835
BpiI	GAAGAC	1 cut(s)	690
Bpu10I	CCTNAGC	1 cut(s)	429
BpuMI	CCSGG	2 cut(s)	135, 152
Bsa29I	ATCGAT	1 cut(s)	312
BsaAI	YACGTR	1 cut(s)	908
BsaHI	GRCGYC	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	661
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 355
Bse1I	ACTGG	2 cut(s)	31, 635
BseBI	CCWGG	1 cut(s)	663
BseCI	ATCGAT	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	661
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	2 cut(s)	301, 355
BseMII	CTCAG	3 cut(s)	400, 420, 827
BseNI	ACTGG	2 cut(s)	31, 635
BseRI	GAGGAG	3 cut(s)	243, 246, 711
BseXI	GCAGC	2 cut(s)	550, 822
Bsh1236I	CGCG	1 cut(s)	554
BshFI	GGCC	2 cut(s)	305, 892
BshNI	GGYRCC	1 cut(s)	557
BshVI	ATCGAT	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	435
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	5 cut(s)	74, 135, 152, 338, 367
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	2 cut(s)	301, 355
BsmAI	GTCTC	2 cut(s)	247, 527
BsmBI	CGTCTC	1 cut(s)	527
BsmFI	GGGAC	1 cut(s)	608
BsnI	GGCC	2 cut(s)	305, 892
Bso31I	GGTCTC	1 cut(s)	247
BsoBI	CYCGRG	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp1407I	TGTACA	1 cut(s)	709
Bsp143I	GATC	7 cut(s)	37, 267, 379, 424, 484, 640, 721
BspACI	CCGC	5 cut(s)	125, 209, 335, 554, 863
BspANI	GGCC	2 cut(s)	305, 892
BspCNI	CTCAG	3 cut(s)	399, 421, 826
BspDI	ATCGAT	1 cut(s)	312
BspFNI	CGCG	1 cut(s)	554
BspHI	TCATGA	2 cut(s)	643, 745
BspLI	GGNNCC	2 cut(s)	559, 875
BspPI	GGATC	2 cut(s)	419, 492
BspT107I	GGYRCC	1 cut(s)	557
BspTNI	GGTCTC	1 cut(s)	247
BsrGI	TGTACA	1 cut(s)	709
BsrI	ACTGG	2 cut(s)	31, 635
BssECI	CCNNGG	1 cut(s)	661
BssMI	GATC	7 cut(s)	37, 267, 379, 424, 484, 640, 721
BssNI	GRCGYC	1 cut(s)	558
BssSI	CACGAG	2 cut(s)	103, 244
Bst2BI	CACGAG	2 cut(s)	103, 244
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	6 cut(s)	17, 187, 400, 458, 779, 904
Bst6I	CTCTTC	2 cut(s)	55, 231
BstACI	GRCGYC	1 cut(s)	558
BstAUI	TGTACA	1 cut(s)	709
BstBAI	YACGTR	1 cut(s)	908
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	4 cut(s)	264, 386, 429, 813
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	554
BstH2I	RGCGCY	2 cut(s)	335, 561
BstHHI	GCGC	2 cut(s)	334, 560
BstKTI	GATC	7 cut(s)	40, 270, 382, 427, 487, 643, 724
BstMAI	GTCTC	2 cut(s)	247, 527
BstMBI	GATC	7 cut(s)	37, 267, 379, 424, 484, 640, 721
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	663
BstSCI	CCNGG	3 cut(s)	133, 150, 661
BstUI	CGCG	1 cut(s)	554
BstV1I	GCAGC	2 cut(s)	550, 822
BstV2I	GAAGAC	1 cut(s)	690
BstX2I	RGATCY	1 cut(s)	484
BstXI	CCANNNNNNTGG	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	484
Bsu15I	ATCGAT	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	305, 892
BsuTUI	ATCGAT	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	784
Cac8I	GCNNGC	1 cut(s)	556
CciI	TCATGA	2 cut(s)	643, 745
CfoI	GCGC	2 cut(s)	334, 560
ClaI	ATCGAT	1 cut(s)	312
CseI	GACGC	1 cut(s)	544
Csp6I	GTAC	7 cut(s)	24, 97, 131, 249, 475, 710, 905
CviAII	CATG	5 cut(s)	415, 529, 644, 688, 746
CviQI	GTAC	7 cut(s)	24, 97, 131, 249, 475, 710, 905
DdeI	CTNAG	4 cut(s)	264, 386, 429, 813
DinI	GGCGCC	1 cut(s)	559
DpnI	GATC	7 cut(s)	39, 269, 381, 426, 486, 642, 723
DpnII	GATC	7 cut(s)	37, 267, 379, 424, 484, 640, 721
EaeI	YGGCCR	1 cut(s)	890
Eam1104I	CTCTTC	2 cut(s)	55, 231
EarI	CTCTTC	2 cut(s)	55, 231
Ecl136II	GAGCTC	1 cut(s)	433
Eco147I	AGGCCT	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	435
Eco31I	GGTCTC	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	433
Eco57I	CTGAAG	2 cut(s)	284, 818
Eco88I	CYCGRG	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	433
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	661
EcoT38I	GRGCYC	1 cut(s)	435
EgeI	GGCGCC	1 cut(s)	559
EheI	GGCGCC	1 cut(s)	559
Esp3I	CGTCTC	1 cut(s)	527
FaeI	CATG	5 cut(s)	418, 532, 647, 691, 749
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	5 cut(s)	414, 528, 643, 687, 745
FauI	CCCGC	1 cut(s)	547
FbaI	TGATCA	4 cut(s)	37, 379, 640, 721
Fnu4HI	GCNGC	3 cut(s)	335, 539, 836
FokI	GGATG	1 cut(s)	264
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	3 cut(s)	335, 539, 836
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	2 cut(s)	333, 559
GluI	GCNGC	3 cut(s)	335, 539, 836
HaeII	RGCGCY	2 cut(s)	335, 561
HaeIII	GGCC	2 cut(s)	305, 892
HapII	CCGG	5 cut(s)	74, 135, 152, 338, 367
HgaI	GACGC	1 cut(s)	544
HhaI	GCGC	2 cut(s)	334, 560
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	5 cut(s)	418, 532, 647, 691, 749
Hin6I	GCGC	2 cut(s)	332, 558
HinP1I	GCGC	2 cut(s)	332, 558
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	3 cut(s)	596, 716, 911
HpaII	CCGG	5 cut(s)	74, 135, 152, 338, 367
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	2 cut(s)	183, 249
Hpy188III	TCNNGA	4 cut(s)	428, 520, 644, 746
Hpy8I	GTNNAC	2 cut(s)	183, 249
HpyAV	CCTTC	4 cut(s)	526, 748, 820, 887
HpyCH4III	ACNGT	6 cut(s)	17, 187, 400, 458, 779, 904
HpyCH4IV	ACGT	1 cut(s)	907
HpyCH4V	TGCA	2 cut(s)	414, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	4 cut(s)	264, 386, 429, 813
HpySE526I	ACGT	1 cut(s)	907
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	5 cut(s)	418, 532, 647, 691, 749
HspAI	GCGC	2 cut(s)	332, 558
KasI	GGCGCC	1 cut(s)	557
Ksp22I	TGATCA	4 cut(s)	37, 379, 640, 721
Kzo9I	GATC	7 cut(s)	37, 267, 379, 424, 484, 640, 721
LmnI	GCTCC	3 cut(s)	149, 329, 661
Lsp1109I	GCAGC	2 cut(s)	550, 822
LweI	GCATC	3 cut(s)	573, 643, 835
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	1 cut(s)	907
MalI	GATC	7 cut(s)	39, 269, 381, 426, 486, 642, 723
MboI	GATC	7 cut(s)	37, 267, 379, 424, 484, 640, 721
MboII	GAAGA	9 cut(s)	17, 42, 45, 48, 248, 659, 663, 695, 835
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	1 cut(s)	435
MlsI	TGGCCA	1 cut(s)	892
MluCI	AATT	6 cut(s)	31, 175, 341, 625, 667, 749
MluNI	TGGCCA	1 cut(s)	892
Mly113I	GGCGCC	1 cut(s)	558
MlyI	GAGTC	2 cut(s)	590, 710
MmeI	TCCRAC	2 cut(s)	171, 307
MnlI	CCTC	6 cut(s)	126, 221, 224, 232, 291, 689
Mox20I	TGGCCA	1 cut(s)	892
MscI	TGGCCA	1 cut(s)	892
MseI	TTAA	3 cut(s)	258, 624, 919
MslI	CAYNNNNRTG	1 cut(s)	648
Msp20I	TGGCCA	1 cut(s)	892
MspI	CCGG	5 cut(s)	74, 135, 152, 338, 367
MspR9I	CCNGG	3 cut(s)	135, 152, 663
MvaI	CCWGG	1 cut(s)	663
MvnI	CGCG	1 cut(s)	554
MwoI	GCNNNNNNNGC	1 cut(s)	269
NarI	GGCGCC	1 cut(s)	558
NciI	CCSGG	2 cut(s)	135, 152
NdeII	GATC	7 cut(s)	37, 267, 379, 424, 484, 640, 721
NlaIII	CATG	5 cut(s)	418, 532, 647, 691, 749
NlaIV	GGNNCC	2 cut(s)	559, 875
PagI	TCATGA	2 cut(s)	643, 745
PceI	AGGCCT	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	911
PflMI	CCANNNNNTGG	1 cut(s)	355
PkrI	GCNGC	3 cut(s)	336, 540, 837
PleI	GAGTC	2 cut(s)	590, 710
PluTI	GGCGCC	1 cut(s)	561
PpsI	GAGTC	2 cut(s)	590, 710
Ppu21I	YACGTR	1 cut(s)	908
Psp124BI	GAGCTC	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	2 cut(s)	559, 875
PsuI	RGATCY	1 cut(s)	484
RsaI	GTAC	7 cut(s)	25, 98, 132, 250, 476, 711, 906
RsaNI	GTAC	7 cut(s)	24, 97, 131, 249, 475, 710, 905
RseI	CAYNNNNRTG	1 cut(s)	648
SacI	GAGCTC	1 cut(s)	435
SaqAI	TTAA	3 cut(s)	258, 624, 919
SatI	GCNGC	3 cut(s)	335, 539, 836
Sau3AI	GATC	7 cut(s)	37, 267, 379, 424, 484, 640, 721
ScaI	AGTACT	2 cut(s)	25, 98
SchI	GAGTC	2 cut(s)	590, 710
ScrFI	CCNGG	3 cut(s)	135, 152, 663
SduI	GDGCHC	1 cut(s)	435
SfaNI	GCATC	3 cut(s)	573, 643, 835
SfoI	GGCGCC	1 cut(s)	559
SmiMI	CAYNNNNRTG	1 cut(s)	648
Sse9I	AATT	6 cut(s)	31, 175, 341, 625, 667, 749
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	5 cut(s)	125, 209, 335, 554, 863
SspDI	GGCGCC	1 cut(s)	557
SspMI	CTAG	1 cut(s)	600
SstI	GAGCTC	1 cut(s)	435
StuI	AGGCCT	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	133, 150, 661
TaaI	ACNGT	6 cut(s)	17, 187, 400, 458, 779, 904
TaiI	ACGT	1 cut(s)	910
TaqI	TCGA	5 cut(s)	111, 312, 407, 423, 435
TasI	AATT	6 cut(s)	31, 175, 341, 625, 667, 749
TatI	WGTACW	5 cut(s)	23, 96, 248, 474, 709
TauI	GCSGC	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	911
Tru1I	TTAA	3 cut(s)	258, 624, 919
Tru9I	TTAA	3 cut(s)	258, 624, 919
TscAI	CASTG	1 cut(s)	784
TseI	GCWGC	2 cut(s)	538, 835
TspDTI	ATGAA	3 cut(s)	632, 660, 762
TspRI	CASTG	1 cut(s)	784
Van91I	CCANNNNNTGG	1 cut(s)	355
XagI	CCTNNNNNAGG	1 cut(s)	299
XapI	RAATTY	1 cut(s)	31
XspI	CTAG	1 cut(s)	600
ZrmI	AGTACT	2 cut(s)	25, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.