MD06G1171700.v1.1

ELK

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
31218154 .. 31225360
7207 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1171700.v1.1.491

Sequence Viewer

Length: 1056 bp
ATGATGGAGGAGCTGTACGGCCTTGGTGGCTCATCGTCAACGCCTTCAGCTGGTTTCAGCTCTGATCAATACTACTCTTCATCAATGGCTGCCATGCCTTTTCCGGCCAATCAGACGGTTCTTGATCATCAGGTGGACTACTACGACAACTACAGGAGTAGGAGCGCTAGCTTTGAGCCCTTAGCTGCGGCTCTGGGGGAGCAGTGGTTACCCGGGACGGTGAGGCCCGACCAGATGTTTTCAGGGTCGTCGTCCGGAGTGTCAGACGCTGCTTCGGTGGTGGCAGCTGGGATTCAAAGAGAAGGAGGAGGTTGGGGAGAAGAGGTTTCCTGTCAAATGAATATTGAGAAGATCGCTTCACATCCTCTATACCCTAAGCTTCTTCAAGCTTACATCGATTGCCAAAAGGTGGGAGCGCCACCAGAAATAGCAAGTGTGTTGGACGAAATCCGGCGACAAAGTGATCATCTAATTTCCACGAGACCCACCGCTTCAACTTGCATTTCTACTGCCGATCCTGACCTCGATCTCTTCATGGAAAGTTACTGCGAAATATTGTTCAAGTACAAATCAGATCTTACGAGGCCATTTGATGAAGCAATCACCTTCTTGAACAAAATGGAGACGCAGCTCAACACTCTCACCAATAATACCAACGATGCTGCTGGTTCATCGGACGAAGAAGACTGGAGTGGAGGAGAGATAGAGGCACAAGACTCTCCGCGGACAAAGGAAGATCATGAGCTCAAGGATAAACTGTTGCGTAAATACAGTGGCTATATTAGCACCCTTAAACATGAGTTTTCCAAGACGAAGAAGAAAGGAAAGCTACCAAAAGAAGCAAGGCAAATTCTCTTTGATTGGTGGAACCTTCACTATAAATGGCCTTACCCAACGGAAGCTGATAAAATTAGTCTTGCCCAAGTGACTGGACTGGATCAGAAACAAATTAATAACTGGTTTATAAATCAAAGGAAGCGCCATTGGAAGCCATCAGAGAACATGCAGTTTGCTGTTATGGACAGGCTTTATGGACCATGTTTTACCAAGGATTGA

Protein Analysis

352

Amino Acids

39.57

Weight (kDa)

5.16

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KNOX1 PF03790 117 - 155 1.3e-20 KNOX1 domain
KNOX2 PF03791 171 - 215 1.7e-21 KNOX2 domain
ELK PF03789 248 - 269 1.8e-11 ELK domain
Homeobox_KN PF05920 288 - 327 1.4e-18 Homeobox KN domain
Homeodomain PF00046 296 - 328 3.2e-06 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 965
AccB7I CCANNNNNTGG 1 cut(s) 409
AccII CGCG 1 cut(s) 724
AccIII TCCGGA 1 cut(s) 254
AciI CCGC 4 cut(s) 188, 489, 722, 724
AclWI GGATC 2 cut(s) 509, 945
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 1 cut(s) 849
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 2 cut(s) 17, 566
AfeI AGCGCT 1 cut(s) 166
AfiI CCNNNNNNNGG 2 cut(s) 50, 409
AgsI TTSAA 5 cut(s) 296, 386, 495, 562, 613
Alw21I GWGCWC 1 cut(s) 747
Alw26I GTCTC 2 cut(s) 475, 617
AlwI GGATC 2 cut(s) 509, 945
AlwNI CAGNNNCTG 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 212
Aor13HI TCCGGA 1 cut(s) 254
Aor51HI AGCGCT 1 cut(s) 166
AoxI GGCC 5 cut(s) 19, 105, 224, 584, 884
ApeKI GCWGC 6 cut(s) 89, 185, 269, 284, 628, 662
ApoI RAATTY 1 cut(s) 849
AseI ATTAAT 1 cut(s) 951
AspLEI GCGC 3 cut(s) 167, 418, 981
AspS9I GGNCC 2 cut(s) 225, 1034
AsuC2I CCSGG 2 cut(s) 213, 214
AsuHPI GGTGA 3 cut(s) 232, 595, 634
AsuNHI GCTAGC 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 1 cut(s) 1034
BanII GRGCYC 2 cut(s) 180, 747
BauI CACGAG 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 690
Bbv12I GWGCWC 1 cut(s) 747
BbvI GCAGC 6 cut(s) 76, 172, 256, 296, 640, 649
BccI CCATC 1 cut(s) 1000
BceAI ACGGC 1 cut(s) 34
BclI TGATCA 3 cut(s) 64, 124, 463
BcnI CCSGG 2 cut(s) 213, 214
BcoDI GTCTC 2 cut(s) 475, 617
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 151
BfoI RGCGCY 3 cut(s) 168, 419, 982
BglI GCCNNNNNGGC 1 cut(s) 27
BglII AGATCT 1 cut(s) 574
BisI GCNGC 7 cut(s) 90, 186, 189, 270, 285, 629, 663
BlsI GCNGC 7 cut(s) 91, 187, 190, 271, 286, 630, 664
Bme1390I CCNGG 2 cut(s) 213, 214
Bme18I GGWCC 1 cut(s) 1034
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 225, 1034
BmiI GGNNCC 1 cut(s) 869
BmrFI CCNGG 2 cut(s) 213, 214
BmsI GCATC 1 cut(s) 649
BmtI GCTAGC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 690
BpmI CTGGAG 1 cut(s) 709
Bpu10I CCTNAGC 2 cut(s) 181, 375
BpuEI CTTGAG 1 cut(s) 731
BpuMI CCSGG 2 cut(s) 213, 214
Bsa29I ATCGAT 1 cut(s) 396
BsaI GGTCTC 1 cut(s) 475
BsaJI CCNNGG 4 cut(s) 22, 212, 722, 1047
BsaWI WCCGGW 1 cut(s) 254
BsaXI ACNNNNNCTCC 5 cut(s) 29, 191, 221, 309, 339
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 409
Bse1I ACTGG 4 cut(s) 692, 934, 939, 962
BseAI TCCGGA 1 cut(s) 254
BseCI ATCGAT 1 cut(s) 396
BseDI CCNNGG 4 cut(s) 22, 212, 722, 1047
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 2 cut(s) 50, 409
BseNI ACTGG 4 cut(s) 692, 934, 939, 962
BseRI GAGGAG 3 cut(s) 23, 321, 711
BseXI GCAGC 6 cut(s) 76, 172, 256, 296, 640, 649
BseYI CCCAGC 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 724
BshFI GGCC 5 cut(s) 21, 107, 226, 586, 886
BshVI ATCGAT 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 747
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 4 cut(s) 104, 213, 255, 451
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 2 cut(s) 50, 409
BsmAI GTCTC 2 cut(s) 475, 617
BsmBI CGTCTC 1 cut(s) 617
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 5 cut(s) 21, 107, 226, 586, 886
Bso31I GGTCTC 1 cut(s) 475
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 2 cut(s) 180, 747
Bsp13I TCCGGA 1 cut(s) 254
Bsp143I GATC 9 cut(s) 64, 124, 351, 463, 514, 526, 574, 736, 937
BspACI CCGC 4 cut(s) 188, 489, 722, 724
BspANI GGCC 5 cut(s) 21, 107, 226, 586, 886
BspDI ATCGAT 1 cut(s) 396
BspEI TCCGGA 1 cut(s) 254
BspFNI CGCG 1 cut(s) 724
BspHI TCATGA 1 cut(s) 739
BspLI GGNNCC 1 cut(s) 869
BspOI GCTAGC 1 cut(s) 171
BspPI GGATC 2 cut(s) 509, 945
BspTNI GGTCTC 1 cut(s) 475
BsrI ACTGG 4 cut(s) 692, 934, 939, 962
BssECI CCNNGG 4 cut(s) 22, 212, 722, 1047
BssMI GATC 9 cut(s) 64, 124, 351, 463, 514, 526, 574, 736, 937
BssSI CACGAG 1 cut(s) 478
BssT1I CCWWGG 2 cut(s) 22, 1047
Bst2BI CACGAG 1 cut(s) 478
Bst4CI ACNGT 4 cut(s) 118, 220, 759, 773
Bst6I CTCTTC 3 cut(s) 82, 315, 536
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 2 cut(s) 181, 375
BstDSI CCRYGG 1 cut(s) 722
BstEII GGTNACC 1 cut(s) 207
BstF5I GGATG 1 cut(s) 361
BstFNI CGCG 1 cut(s) 724
BstH2I RGCGCY 3 cut(s) 168, 419, 982
BstHHI GCGC 3 cut(s) 167, 418, 981
BstKTI GATC 9 cut(s) 67, 127, 354, 466, 517, 529, 577, 739, 940
BstMAI GTCTC 2 cut(s) 475, 617
BstMBI GATC 9 cut(s) 64, 124, 351, 463, 514, 526, 574, 736, 937
BstMWI GCNNNNNNNGC 2 cut(s) 27, 783
BstNSI RCATGY 1 cut(s) 1006
BstPI GGTNACC 1 cut(s) 207
BstSCI CCNGG 2 cut(s) 211, 212
BstSFI CTRYAG 1 cut(s) 151
BstUI CGCG 1 cut(s) 724
BstV1I GCAGC 6 cut(s) 76, 172, 256, 296, 640, 649
BstV2I GAAGAC 1 cut(s) 690
BstX2I RGATCY 1 cut(s) 574
BstXI CCANNNNNNTGG 1 cut(s) 929
BstYI RGATCY 1 cut(s) 574
Bsu15I ATCGAT 1 cut(s) 396
BsuRI GGCC 5 cut(s) 21, 107, 226, 586, 886
BsuTUI ATCGAT 1 cut(s) 396
BtgI CCRYGG 1 cut(s) 722
BtsCI GGATG 1 cut(s) 361
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 2 cut(s) 209, 778
Cac8I GCNNGC 1 cut(s) 169
CaiI CAGNNNCTG 1 cut(s) 269
CciI TCATGA 1 cut(s) 739
CfoI GCGC 3 cut(s) 167, 418, 981
Cfr13I GGNCC 2 cut(s) 225, 1034
Cfr42I CCGCGG 1 cut(s) 725
Cfr9I CCCGGG 1 cut(s) 212
ClaI ATCGAT 1 cut(s) 396
CseI GACGC 2 cut(s) 275, 634
Csp6I GTAC 2 cut(s) 16, 565
CviAII CATG 6 cut(s) 94, 535, 740, 797, 1003, 1038
CviQI GTAC 2 cut(s) 16, 565
DdeI CTNAG 2 cut(s) 181, 375
DpnI GATC 9 cut(s) 66, 126, 353, 465, 516, 528, 576, 738, 939
DpnII GATC 9 cut(s) 64, 124, 351, 463, 514, 526, 574, 736, 937
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 3 cut(s) 82, 315, 536
EarI CTCTTC 3 cut(s) 82, 315, 536
Ecl136II GAGCTC 1 cut(s) 745
Eco130I CCWWGG 2 cut(s) 22, 1047
Eco24I GRGCYC 2 cut(s) 180, 747
Eco31I GGTCTC 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 1034
Eco47III AGCGCT 1 cut(s) 166
Eco53kI GAGCTC 1 cut(s) 745
Eco57I CTGAAG 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 212
Eco91I GGTNACC 1 cut(s) 207
EcoICRI GAGCTC 1 cut(s) 745
EcoO65I GGTNACC 1 cut(s) 207
EcoT14I CCWWGG 2 cut(s) 22, 1047
EcoT38I GRGCYC 2 cut(s) 180, 747
ErhI CCWWGG 2 cut(s) 22, 1047
Esp3I CGTCTC 1 cut(s) 617
FaeI CATG 6 cut(s) 97, 538, 743, 800, 1006, 1041
FaqI GGGAC 1 cut(s) 229
FatI CATG 6 cut(s) 93, 534, 739, 796, 1002, 1037
FbaI TGATCA 3 cut(s) 64, 124, 463
Fnu4HI GCNGC 7 cut(s) 90, 186, 189, 270, 285, 629, 663
FokI GGATG 1 cut(s) 348
FriOI GRGCYC 2 cut(s) 180, 747
Fsp4HI GCNGC 7 cut(s) 90, 186, 189, 270, 285, 629, 663
FspBI CTAG 1 cut(s) 168
GlaI GCGC 3 cut(s) 166, 417, 980
GluI GCNGC 7 cut(s) 90, 186, 189, 270, 285, 629, 663
GsaI CCCAGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 709
HaeII RGCGCY 3 cut(s) 168, 419, 982
HaeIII GGCC 5 cut(s) 21, 107, 226, 586, 886
HapII CCGG 4 cut(s) 104, 213, 255, 451
HgaI GACGC 2 cut(s) 275, 634
HhaI GCGC 3 cut(s) 167, 418, 981
Hin1II CATG 6 cut(s) 97, 538, 743, 800, 1006, 1041
Hin6I GCGC 3 cut(s) 165, 416, 979
HinP1I GCGC 3 cut(s) 165, 416, 979
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HindIII AAGCTT 2 cut(s) 377, 387
HinfI GANTC 2 cut(s) 292, 716
HpaII CCGG 4 cut(s) 104, 213, 255, 451
HphI GGTGA 3 cut(s) 232, 595, 634
Hpy166II GTNNAC 2 cut(s) 39, 136
Hpy188I TCNGA 7 cut(s) 64, 114, 265, 574, 676, 942, 997
Hpy188III TCNNGA 5 cut(s) 122, 255, 518, 610, 740
Hpy8I GTNNAC 2 cut(s) 39, 136
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 4 cut(s) 54, 296, 616, 881
HpyCH4III ACNGT 4 cut(s) 118, 220, 759, 773
HpyCH4V TGCA 2 cut(s) 501, 1006
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 783
HpyF3I CTNAG 2 cut(s) 181, 375
Hsp92II CATG 6 cut(s) 97, 538, 743, 800, 1006, 1041
HspAI GCGC 3 cut(s) 165, 416, 979
Kpn2I TCCGGA 1 cut(s) 254
Ksp22I TGATCA 3 cut(s) 64, 124, 463
KspI CCGCGG 1 cut(s) 725
Kzo9I GATC 9 cut(s) 64, 124, 351, 463, 514, 526, 574, 736, 937
LmnI GCTCC 4 cut(s) 10, 162, 199, 413
Lsp1109I GCAGC 6 cut(s) 76, 172, 256, 296, 640, 649
LweI GCATC 1 cut(s) 649
MaeI CTAG 1 cut(s) 168
MaeIII GTNAC 3 cut(s) 207, 542, 925
MalI GATC 9 cut(s) 66, 126, 353, 465, 516, 528, 576, 738, 939
MboI GATC 9 cut(s) 64, 124, 351, 463, 514, 526, 574, 736, 937
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 2 cut(s) 180, 747
MluCI AATT 4 cut(s) 471, 849, 909, 948
MlyI GAGTC 1 cut(s) 710
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 9 cut(s) 216, 299, 302, 316, 375, 533, 576, 689, 700
MroI TCCGGA 1 cut(s) 254
MseI TTAA 2 cut(s) 792, 951
MspA1I CMGCKG 3 cut(s) 50, 287, 724
MspI CCGG 4 cut(s) 104, 213, 255, 451
MspR9I CCNGG 2 cut(s) 213, 214
MvnI CGCG 1 cut(s) 724
MwoI GCNNNNNNNGC 2 cut(s) 27, 783
NciI CCSGG 2 cut(s) 213, 214
NdeII GATC 9 cut(s) 64, 124, 351, 463, 514, 526, 574, 736, 937
NheI GCTAGC 1 cut(s) 167
NlaIII CATG 6 cut(s) 97, 538, 743, 800, 1006, 1041
NlaIV GGNNCC 1 cut(s) 869
NmuCI GTSAC 1 cut(s) 925
NspI RCATGY 1 cut(s) 1006
PagI TCATGA 1 cut(s) 739
PfeI GAWTC 1 cut(s) 292
PflMI CCANNNNNTGG 1 cut(s) 409
PkrI GCNGC 7 cut(s) 91, 187, 190, 271, 286, 630, 664
PleI GAGTC 1 cut(s) 710
PpsI GAGTC 1 cut(s) 710
PshBI ATTAAT 1 cut(s) 951
PsiI TTATAA 1 cut(s) 965
Psp124BI GAGCTC 1 cut(s) 747
PspEI GGTNACC 1 cut(s) 207
PspFI CCCAGC 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 869
PspPI GGNCC 2 cut(s) 225, 1034
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 1 cut(s) 574
PvuII CAGCTG 2 cut(s) 50, 287
RsaI GTAC 2 cut(s) 17, 566
RsaNI GTAC 2 cut(s) 16, 565
SacI GAGCTC 1 cut(s) 747
SacII CCGCGG 1 cut(s) 725
SaqAI TTAA 2 cut(s) 792, 951
SatI GCNGC 7 cut(s) 90, 186, 189, 270, 285, 629, 663
Sau3AI GATC 9 cut(s) 64, 124, 351, 463, 514, 526, 574, 736, 937
Sau96I GGNCC 2 cut(s) 225, 1034
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 2 cut(s) 213, 214
SduI GDGCHC 2 cut(s) 180, 747
SfaNI GCATC 1 cut(s) 649
SfcI CTRYAG 1 cut(s) 151
Sfr303I CCGCGG 1 cut(s) 725
SgrBI CCGCGG 1 cut(s) 725
SinI GGWCC 1 cut(s) 1034
SmaI CCCGGG 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
Sse9I AATT 4 cut(s) 471, 849, 909, 948
SsiI CCGC 4 cut(s) 188, 489, 722, 724
SspI AATATT 2 cut(s) 343, 555
SspMI CTAG 1 cut(s) 168
SstI GAGCTC 1 cut(s) 747
StyD4I CCNGG 2 cut(s) 211, 212
StyI CCWWGG 2 cut(s) 22, 1047
TaaI ACNGT 4 cut(s) 118, 220, 759, 773
TaqI TCGA 2 cut(s) 396, 525
TasI AATT 4 cut(s) 471, 849, 909, 948
TatI WGTACW 1 cut(s) 564
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 2 cut(s) 792, 951
Tru9I TTAA 2 cut(s) 792, 951
TscAI CASTG 2 cut(s) 209, 778
TseFI GTSAC 1 cut(s) 925
TseI GCWGC 6 cut(s) 89, 185, 269, 284, 628, 662
Tsp45I GTSAC 1 cut(s) 925
TspDTI ATGAA 5 cut(s) 69, 353, 523, 609, 660
TspGWI ACGGA 1 cut(s) 911
TspMI CCCGGG 1 cut(s) 212
TspRI CASTG 2 cut(s) 209, 778
Van91I CCANNNNNTGG 1 cut(s) 409
VpaK11BI GGWCC 1 cut(s) 1034
VspI ATTAAT 1 cut(s) 951
XapI RAATTY 1 cut(s) 849
XceI RCATGY 1 cut(s) 1006
XmaI CCCGGG 1 cut(s) 212
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.