Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017266.1

Orthogroup ID

OG0002636

Physical Location & Seq

Genomic Coordinates Reverse (-)

6018 .. 11827

Gene Structure 5810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017266.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atgtacggattgcaatcagcggtggactacggggataagtccacggactacgccgacaaggcccttatgacgccggagaacctgatccttcctatggattaccagagcctgctctcctccgtagctttccgagaccatcgggtcccgatgatgttcggatccgacgccggcgacttgtactcggccatatcctccgtgccggagtttcggcgcggggaggaagatgtttttggacccatcaaagccaaaattgcttcccatccaagctaccctagactcattgaggcctacatcgattgccagaaggtaggagcgcctccggaaatagcgagcttcttggaggaaatccgccgagaaaatgacctttataaacgagaaagagacgctgctatgtccacgtgtttaggagccgatcccgagctcgacgagttcatggaaacctactgcgatatgctggtcaagtacaaatcagatctagcaaggccttttgatgaagccaccacgttcttgaacaagattgaaacgcaactcagcaatctctgcattcgaactctctccgatgaaggtgctgtgtcatcagaggaggagttcagcggaggcgaattagaggtacaagaagctcaagctaggggagaagatcgagatctcaaaaataggcttttccgtaagtttggcagtcatattggcaccttgaagctggaattctccaagaagaagaagaagggaaagcttccgaaggaagcaagacaagcgttacttcattggtggagtgttcactataaatggccatacccgacggaggctgataagattgcactggcggaatcaacggggctcgatcagaggcaaatcaacaactggttcatcaatcagcggaaacgtcattggagaccatctgaaaacatgcaatttgccgtcatggataacctttctggaccattctttgccgacgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010073 GO:0010093 GO:0010094 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

318

Amino Acids

36.41

Weight (kDa)

5.21

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23380 AT1G23380 AT1G70510 AT1G70510
fragaria_vesca	FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_5g05530 FvH4_5g05530
malus_domestica	MD06G1171700.v1.1 MD13G1095800.v1.1 MD14G1177200.v1.1 MD16G1097200.v1.1
prunus_persica	Prupe.1G249600_v2.0.a1 Prupe.5G171100_v2.0.a1
pyrus_communis	pycom06g15280 pycom13g08340 pycom14g14800 pycom16g08280
rosa_chinensis	RchiOBHm_Chr4g0433571 RchiOBHm_Chr7g0193251
rosa_laevigata	RLG00000004283 RLG00000006743
rosa_multiflora	Rmu_sc0017266.1_g000003
rosa_roxburghii	Rroxscaffold_3G00262250 Rroxscaffold_5G00375060
rosa_rugosa	Rorug04G0269800 Rorug07G0008500 Rorug07G0008600
rosa_samantha	Rh4AG324700 Rh4BG332400 Rh4CG347700 Rh4DG328800 Rh7AG134100 Rh7BG135100 Rh7CG138100 Rh7DG136100
rosa_wichuraiana	Rw4G028100 Rw7G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AasI	GACNNNNNNGTC	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	686
AccII	CGCG	1 cut(s)	213
AccIII	TCCGGA	1 cut(s)	319
AciI	CCGC	6 cut(s)	20, 213, 349, 594, 821, 874
AclWI	GGATC	4 cut(s)	79, 153, 166, 407
AcoI	YGGCCR	2 cut(s)	183, 785
AcsI	RAATTY	1 cut(s)	701
AcvI	CACGTG	1 cut(s)	399
AcyI	GRCGYC	2 cut(s)	71, 165
AfaI	GTAC	4 cut(s)	5, 179, 464, 612
AfiI	CCNNNNNNNGG	2 cut(s)	94, 799
AflIII	ACRYGT	1 cut(s)	398
AgsI	TTSAA	3 cut(s)	511, 521, 694
AjuI	GAANNNNNNNTTGG	2 cut(s)	213, 245
AluBI	AGCT	8 cut(s)	125, 267, 333, 421, 620, 626, 697, 730
AluI	AGCT	8 cut(s)	125, 267, 333, 421, 620, 626, 697, 730
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	3 cut(s)	126, 375, 883
AlwI	GGATC	4 cut(s)	79, 153, 166, 407
AlwNI	CAGNNNCTG	1 cut(s)	109
Ama87I	CYCGRG	1 cut(s)	416
Aor13HI	TCCGGA	1 cut(s)	319
AoxI	GGCC	5 cut(s)	60, 183, 285, 482, 785
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	701
AspLEI	GCGC	2 cut(s)	213, 316
AspS9I	GGNCC	4 cut(s)	61, 142, 233, 935
AsuII	TTCGAA	1 cut(s)	547
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	3 cut(s)	142, 233, 935
BalI	TGGCCA	1 cut(s)	787
BamHI	GGATCC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	686
BanII	GRGCYC	2 cut(s)	423, 837
BbrPI	CACGTG	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	4 cut(s)	144, 245, 267, 901
BceAI	ACGGC	1 cut(s)	899
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BcoDI	GTCTC	3 cut(s)	126, 375, 883
BfaI	CTAG	3 cut(s)	273, 476, 627
BfoI	RGCGCY	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	59
BglII	AGATCT	2 cut(s)	472, 643
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme18I	GGWCC	3 cut(s)	142, 233, 935
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	4 cut(s)	61, 142, 233, 935
BmiI	GGNNCC	6 cut(s)	143, 144, 160, 235, 409, 688
Bpu14I	TTCGAA	1 cut(s)	547
BpuEI	CTTGAG	1 cut(s)	606
Bsa29I	ATCGAT	1 cut(s)	294
BsaAI	YACGTR	1 cut(s)	399
BsaBI	GATNNNNATC	2 cut(s)	13, 642
BsaHI	GRCGYC	2 cut(s)	71, 165
BsaI	GGTCTC	2 cut(s)	126, 883
BsaJI	CCNNGG	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 799
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	2 cut(s)	822, 863
Bse8I	GATNNNNATC	2 cut(s)	13, 642
BseAI	TCCGGA	1 cut(s)	319
BseCI	ATCGAT	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	259
BseJI	GATNNNNATC	2 cut(s)	13, 642
BseLI	CCNNNNNNNGG	2 cut(s)	94, 799
BseMII	CTCAG	1 cut(s)	544
BseNI	ACTGG	2 cut(s)	822, 863
BseRI	GAGGAG	3 cut(s)	106, 596, 599
BseXI	GCAGC	1 cut(s)	373
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	5 cut(s)	62, 185, 287, 484, 787
BshNI	GGYRCC	1 cut(s)	686
BshVI	ATCGAT	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	423
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	4 cut(s)	74, 168, 200, 320
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	94, 799
BsmAI	GTCTC	3 cut(s)	126, 375, 883
BsmBI	CGTCTC	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	543
BsnI	GGCC	5 cut(s)	62, 185, 287, 484, 787
Bso31I	GGTCTC	2 cut(s)	126, 883
BsoBI	CYCGRG	1 cut(s)	416
Bsp119I	TTCGAA	1 cut(s)	547
Bsp1286I	GDGCHC	2 cut(s)	423, 837
Bsp13I	TCCGGA	1 cut(s)	319
Bsp143I	GATC	7 cut(s)	84, 158, 412, 472, 637, 643, 838
BspACI	CCGC	6 cut(s)	20, 213, 349, 594, 821, 874
BspANI	GGCC	5 cut(s)	62, 185, 287, 484, 787
BspCNI	CTCAG	1 cut(s)	543
BspDI	ATCGAT	1 cut(s)	294
BspEI	TCCGGA	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	6 cut(s)	143, 144, 160, 235, 409, 688
BspPI	GGATC	4 cut(s)	79, 153, 166, 407
BspT104I	TTCGAA	1 cut(s)	547
BspT107I	GGYRCC	1 cut(s)	686
BspTNI	GGTCTC	2 cut(s)	126, 883
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	822, 863
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	7 cut(s)	84, 158, 412, 472, 637, 643, 838
BssNI	GRCGYC	2 cut(s)	71, 165
BstACI	GRCGYC	2 cut(s)	71, 165
BstAPI	GCANNNNNTGC	1 cut(s)	540
BstBAI	YACGTR	1 cut(s)	399
BstBI	TTCGAA	1 cut(s)	547
BstC8I	GCNNGC	3 cut(s)	110, 169, 331
BstDEI	CTNAG	1 cut(s)	530
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	2 cut(s)	213, 316
BstKTI	GATC	7 cut(s)	87, 161, 415, 475, 640, 646, 841
BstMAI	GTCTC	3 cut(s)	126, 375, 883
BstMBI	GATC	7 cut(s)	84, 158, 412, 472, 637, 643, 838
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 251, 540, 749
BstNSI	RCATGY	1 cut(s)	907
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	3 cut(s)	158, 472, 643
BstYI	RGATCY	3 cut(s)	158, 472, 643
Bsu15I	ATCGAT	1 cut(s)	294
BsuRI	GGCC	5 cut(s)	62, 185, 287, 484, 787
BsuTUI	ATCGAT	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	815
Cac8I	GCNNGC	3 cut(s)	110, 169, 331
CaiI	CAGNNNCTG	1 cut(s)	109
CfoI	GCGC	2 cut(s)	213, 316
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	4 cut(s)	61, 142, 233, 935
ClaI	ATCGAT	1 cut(s)	294
CseI	GACGC	3 cut(s)	79, 173, 392
Csp6I	GTAC	4 cut(s)	4, 178, 463, 611
CviAII	CATG	3 cut(s)	433, 904, 919
CviQI	GTAC	4 cut(s)	4, 178, 463, 611
DdeI	CTNAG	1 cut(s)	530
DpnI	GATC	7 cut(s)	86, 160, 414, 474, 639, 645, 840
DpnII	GATC	7 cut(s)	84, 158, 412, 472, 637, 643, 838
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
EaeI	YGGCCR	2 cut(s)	183, 785
EciI	GGCGGA	2 cut(s)	338, 836
Ecl136II	GAGCTC	1 cut(s)	421
Eco147I	AGGCCT	2 cut(s)	287, 484
Eco24I	GRGCYC	2 cut(s)	423, 837
Eco31I	GGTCTC	2 cut(s)	126, 883
Eco47I	GGWCC	3 cut(s)	142, 233, 935
Eco53kI	GAGCTC	1 cut(s)	421
Eco72I	CACGTG	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	416
EcoICRI	GAGCTC	1 cut(s)	421
EcoO109I	RGGNCCY	2 cut(s)	61, 142
EcoRI	GAATTC	1 cut(s)	701
EcoT38I	GRGCYC	2 cut(s)	423, 837
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	3 cut(s)	436, 907, 922
FalI	AAGNNNNNCTT	2 cut(s)	741, 773
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	3 cut(s)	432, 903, 918
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	1 cut(s)	246
FriOI	GRGCYC	2 cut(s)	423, 837
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	3 cut(s)	273, 476, 627
GlaI	GCGC	2 cut(s)	212, 315
GluI	GCNGC	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	317
HaeIII	GGCC	5 cut(s)	62, 185, 287, 484, 787
HapII	CCGG	4 cut(s)	74, 168, 200, 320
HgaI	GACGC	3 cut(s)	79, 173, 392
HhaI	GCGC	2 cut(s)	213, 316
Hin1I	GRCGYC	2 cut(s)	71, 165
Hin1II	CATG	3 cut(s)	436, 907, 922
Hin6I	GCGC	2 cut(s)	211, 314
HinP1I	GCGC	2 cut(s)	211, 314
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	2 cut(s)	276, 824
HpaII	CCGG	4 cut(s)	74, 168, 200, 320
Hpy166II	GTNNAC	4 cut(s)	25, 42, 396, 775
Hpy188I	TCNGA	9 cut(s)	131, 158, 163, 472, 559, 580, 735, 843, 898
Hpy188III	TCNNGA	6 cut(s)	145, 320, 416, 508, 641, 933
Hpy8I	GTNNAC	4 cut(s)	25, 42, 396, 775
Hpy99I	CGWCG	4 cut(s)	167, 428, 799, 953
HpyAV	CCTTC	5 cut(s)	98, 298, 557, 715, 730
HpyCH4IV	ACGT	3 cut(s)	398, 503, 880
HpyCH4V	TGCA	4 cut(s)	13, 543, 815, 907
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 251, 540, 749
HpyF3I	CTNAG	1 cut(s)	530
HpySE526I	ACGT	3 cut(s)	398, 503, 880
Hsp92I	GRCGYC	2 cut(s)	71, 165
Hsp92II	CATG	3 cut(s)	436, 907, 922
HspAI	GCGC	2 cut(s)	211, 314
KflI	GGGWCCC	1 cut(s)	142
Kpn2I	TCCGGA	1 cut(s)	319
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Kzo9I	GATC	7 cut(s)	84, 158, 412, 472, 637, 643, 838
LmnI	GCTCC	2 cut(s)	311, 407
Lsp1109I	GCAGC	1 cut(s)	373
MaeI	CTAG	3 cut(s)	273, 476, 627
MaeII	ACGT	3 cut(s)	398, 503, 880
MaeIII	GTNAC	1 cut(s)	753
MalI	GATC	7 cut(s)	86, 160, 414, 474, 639, 645, 840
MboI	GATC	7 cut(s)	84, 158, 412, 472, 637, 643, 838
MboII	GAAGA	5 cut(s)	233, 647, 724, 727, 730
MflI	RGATCY	3 cut(s)	158, 472, 643
MhlI	GDGCHC	2 cut(s)	423, 837
MlsI	TGGCCA	1 cut(s)	787
MluCI	AATT	4 cut(s)	249, 602, 701, 908
MluNI	TGGCCA	1 cut(s)	787
MlyI	GAGTC	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	186
Mox20I	TGGCCA	1 cut(s)	787
MreI	CGCCGGCG	1 cut(s)	167
MroI	TCCGGA	1 cut(s)	319
MroNI	GCCGGC	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	787
Msp20I	TGGCCA	1 cut(s)	787
MspA1I	CMGCKG	3 cut(s)	20, 594, 874
MspI	CCGG	4 cut(s)	74, 168, 200, 320
Mva1269I	GAATGC	1 cut(s)	543
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	4 cut(s)	59, 251, 540, 749
NaeI	GCCGGC	1 cut(s)	169
NdeII	GATC	7 cut(s)	84, 158, 412, 472, 637, 643, 838
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	3 cut(s)	436, 907, 922
NlaIV	GGNNCC	6 cut(s)	143, 144, 160, 235, 409, 688
NmeAIII	GCCGAG	2 cut(s)	161, 377
NspI	RCATGY	1 cut(s)	907
NspV	TTCGAA	1 cut(s)	547
PceI	AGGCCT	2 cut(s)	287, 484
PctI	GAATGC	1 cut(s)	543
PdiI	GCCGGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	824
PkrI	GCNGC	1 cut(s)	388
PleI	GAGTC	1 cut(s)	270
PmaCI	CACGTG	1 cut(s)	399
PmlI	CACGTG	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	270
Ppu21I	YACGTR	1 cut(s)	399
PpuMI	RGGWCCY	1 cut(s)	142
PsiI	TTATAA	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	142
PspCI	CACGTG	1 cut(s)	399
PspN4I	GGNNCC	6 cut(s)	143, 144, 160, 235, 409, 688
PspPI	GGNCC	4 cut(s)	61, 142, 233, 935
PspPPI	RGGWCCY	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	109
PsuI	RGATCY	3 cut(s)	158, 472, 643
RsaI	GTAC	4 cut(s)	5, 179, 464, 612
RsaNI	GTAC	4 cut(s)	4, 178, 463, 611
SacI	GAGCTC	1 cut(s)	423
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	7 cut(s)	84, 158, 412, 472, 637, 643, 838
Sau96I	GGNCC	4 cut(s)	61, 142, 233, 935
SchI	GAGTC	1 cut(s)	270
SduI	GDGCHC	2 cut(s)	423, 837
SfuI	TTCGAA	1 cut(s)	547
SgrAI	CRCCGGYG	1 cut(s)	167
SinI	GGWCC	3 cut(s)	142, 233, 935
SmlI	CTYRAG	1 cut(s)	621
SmoI	CTYRAG	1 cut(s)	621
Sse9I	AATT	4 cut(s)	249, 602, 701, 908
SseBI	AGGCCT	2 cut(s)	287, 484
SsiI	CCGC	6 cut(s)	20, 213, 349, 594, 821, 874
SspMI	CTAG	3 cut(s)	273, 476, 627
SstI	GAGCTC	1 cut(s)	423
StuI	AGGCCT	2 cut(s)	287, 484
TaiI	ACGT	3 cut(s)	401, 506, 883
TaqI	TCGA	5 cut(s)	294, 423, 547, 640, 837
TasI	AATT	4 cut(s)	249, 602, 701, 908
TatI	WGTACW	2 cut(s)	177, 462
TfiI	GAWTC	1 cut(s)	824
TscAI	CASTG	1 cut(s)	822
TseI	GCWGC	1 cut(s)	386
TspDTI	ATGAA	5 cut(s)	421, 507, 576, 749, 853
TspGWI	ACGGA	6 cut(s)	21, 59, 109, 184, 653, 812
TspRI	CASTG	1 cut(s)	822
VpaK11BI	GGWCC	3 cut(s)	142, 233, 935
XapI	RAATTY	1 cut(s)	701
XceI	RCATGY	1 cut(s)	907
XspI	CTAG	3 cut(s)	273, 476, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.