Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002636

Physical Location & Seq

Genomic Coordinates Forward (+)

11639632 .. 11646058

Gene Structure 6427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17280

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGAAGAACTCTGCGGTTTCAGTAGTGGTTCTGATCATTATTACTCTTCTTCTTCTTCAATCGCTATGCCACAGGAAAACTCGCCACTCGCCGACTACTACAGGAGATTCGAGCCTCTAACGGCGGTTGTACCCGGGAGTAGCTCCGACCCGGTATATTATTACTCGGGTTCTAATTCATCCACCGTGTCCGATTGTGTTTCGGTGGCGGTAGCAGGAAATCAACGAGGAGGAGAAGAGGTGTCGTGTACTACCGTTAATGCTAAGATCGCTTCTCATCCTCTCTACCCTAATCTTGTTCAAGCTTACATCGATTGCCAAAAGGTGGGAGCGCCTCCGCAAATAGCGCATATTTTGGAGGAAATCCGGCGAGAAAGTGATCAGCTCAGTAGGATAACCGTCGGTTCGAGTTGCATGGGTGTCGATCCTGAGCTCGATGAGTTCATGGAAACTTACTGTGATATATTGTTGAAGTACAAATCGGATCTGACAAAGCCGTTCAACGAAGCAATCACCTTCTTGAACAGCATGGAGACGCAGCTCAACAATCTCGCCAATACCACTGATGCTCCAGCAGTTAATTCTTCTGATGACGAAGACTTGAGTGGAGGAGAGATCGATGTACAGGACTCTGATCATCAGCGAAAACATGAAGATCATGAATTGAAGGACAAGCTGTTGCGTAAATACAGTGGTTATATAAGCACTCTGAAGCATGAGTTTTCTAAGAAAAAGAAGAAGGGAAAGCTGCCTAAAGATGCTAAGAAAATCCTTATGGATTGGTGGAACCTTCACTATAAATGGCCATATCCAACGGAAGTAGACAAGATGACACTGGCTCAAGTGACGGGTTTGGATCAGAAACAAATAAACAACTGGTTTATAAATCAAAGGAAGCGCCATTGGAAACCATCGGAAAACATGCAGTTTGCTGTTATGGAAAGCCTCTATGGCCCTAGTACTTTTTCCAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0010073 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048507 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

325

Amino Acids

36.74

Weight (kDa)

5.35

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	87 - 127	6e-20	KNOX1 domain
KNOX2	PF03791	138 - 184	5.4e-24	KNOX2 domain
ELK	PF03789	221 - 242	1.7e-11	ELK domain
Homeobox_KN	PF05920	261 - 300	3.8e-18	Homeobox KN domain
Homeodomain	PF00046	268 - 301	8.2e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23380 AT1G23380 AT1G70510 AT1G70510
fragaria_vesca	FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_4g26090 FvH4_5g05530 FvH4_5g05530
malus_domestica	MD06G1171700.v1.1 MD13G1095800.v1.1 MD14G1177200.v1.1 MD16G1097200.v1.1
prunus_persica	Prupe.1G249600_v2.0.a1 Prupe.5G171100_v2.0.a1
pyrus_communis	pycom06g15280 pycom13g08340 pycom14g14800 pycom16g08280
rosa_chinensis	RchiOBHm_Chr4g0433571 RchiOBHm_Chr7g0193251
rosa_laevigata	RLG00000004283 RLG00000006743
rosa_multiflora	Rmu_sc0017266.1_g000003
rosa_roxburghii	Rroxscaffold_3G00262250 Rroxscaffold_5G00375060
rosa_rugosa	Rorug04G0269800 Rorug07G0008500 Rorug07G0008600
rosa_samantha	Rh4AG324700 Rh4BG332400 Rh4CG347700 Rh4DG328800 Rh7AG134100 Rh7BG135100 Rh7CG138100 Rh7DG136100
rosa_wichuraiana	Rw4G028100 Rw7G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	884
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	822
AciI	CCGC	4 cut(s)	15, 125, 209, 338
AclWI	GGATC	3 cut(s)	419, 492, 864
AcoI	YGGCCR	1 cut(s)	803
AcuI	CTGAAG	1 cut(s)	731
AfaI	GTAC	5 cut(s)	132, 250, 476, 624, 961
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	6 cut(s)	60, 302, 472, 502, 523, 667
AluBI	AGCT	7 cut(s)	144, 305, 385, 433, 541, 676, 748
AluI	AGCT	7 cut(s)	144, 305, 385, 433, 541, 676, 748
Alw21I	GWGCWC	1 cut(s)	435
Alw26I	GTCTC	2 cut(s)	527, 966
AlwI	GGATC	3 cut(s)	419, 492, 864
AlwNI	CAGNNNCTG	1 cut(s)	975
Ama87I	CYCGRG	2 cut(s)	134, 166
AoxI	GGCC	2 cut(s)	803, 952
ApeKI	GCWGC	2 cut(s)	538, 748
AspLEI	GCGC	3 cut(s)	334, 349, 900
AspS9I	GGNCC	1 cut(s)	953
AsuC2I	CCSGG	3 cut(s)	135, 136, 152
AsuHPI	GGTGA	1 cut(s)	505
AvaI	CYCGRG	2 cut(s)	134, 166
BalI	TGGCCA	1 cut(s)	805
BanII	GRGCYC	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	2 cut(s)	550, 735
BccI	CCATC	1 cut(s)	919
BceAI	ACGGC	2 cut(s)	138, 481
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BclI	TGATCA	3 cut(s)	34, 379, 634
BcnI	CCSGG	3 cut(s)	135, 136, 152
BcoDI	GTCTC	2 cut(s)	527, 966
BfaI	CTAG	1 cut(s)	957
BfmI	CTRYAG	1 cut(s)	100
BfoI	RGCGCY	2 cut(s)	335, 901
BglI	GCCNNNNNGGC	1 cut(s)	951
BisI	GCNGC	2 cut(s)	539, 749
BlsI	GCNGC	2 cut(s)	540, 750
BmcAI	AGTACT	1 cut(s)	961
Bme1390I	CCNGG	3 cut(s)	135, 136, 152
BmeT110I	CYCGRG	2 cut(s)	134, 166
BmgT120I	GGNCC	1 cut(s)	953
BmiI	GGNNCC	1 cut(s)	788
BmrFI	CCNGG	3 cut(s)	135, 136, 152
BmsI	GCATC	2 cut(s)	556, 748
BpiI	GAAGAC	1 cut(s)	603
BpmI	CTGGAG	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	2 cut(s)	622, 825
BpuMI	CCSGG	3 cut(s)	135, 136, 152
Bsa29I	ATCGAT	2 cut(s)	312, 618
BsaJI	CCNNGG	1 cut(s)	134
BsaXI	ACNNNNNCTCC	4 cut(s)	225, 255, 553, 583
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse1I	ACTGG	2 cut(s)	840, 881
BseCI	ATCGAT	2 cut(s)	312, 618
BseDI	CCNNGG	1 cut(s)	134
BseGI	GGATG	2 cut(s)	179, 277
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMII	CTCAG	2 cut(s)	400, 420
BseNI	ACTGG	2 cut(s)	840, 881
BseRI	GAGGAG	3 cut(s)	243, 246, 624
BseXI	GCAGC	2 cut(s)	550, 735
BshFI	GGCC	2 cut(s)	805, 954
BshVI	ATCGAT	2 cut(s)	312, 618
BsiHKAI	GWGCWC	1 cut(s)	435
BsiHKCI	CYCGRG	2 cut(s)	134, 166
BsiSI	CCGG	3 cut(s)	135, 152, 367
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	2 cut(s)	527, 966
BsmBI	CGTCTC	1 cut(s)	527
BsnI	GGCC	2 cut(s)	805, 954
BsoBI	CYCGRG	2 cut(s)	134, 166
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp1407I	TGTACA	1 cut(s)	622
Bsp143I	GATC	9 cut(s)	34, 267, 379, 424, 484, 615, 634, 655, 856
BspACI	CCGC	4 cut(s)	15, 125, 209, 338
BspANI	GGCC	2 cut(s)	805, 954
BspCNI	CTCAG	2 cut(s)	399, 421
BspDI	ATCGAT	2 cut(s)	312, 618
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	1 cut(s)	788
BspPI	GGATC	3 cut(s)	419, 492, 864
BsrGI	TGTACA	1 cut(s)	622
BsrI	ACTGG	2 cut(s)	840, 881
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	9 cut(s)	34, 267, 379, 424, 484, 615, 634, 655, 856
Bst4CI	ACNGT	5 cut(s)	187, 256, 400, 458, 692
Bst6I	CTCTTC	2 cut(s)	52, 231
BstAUI	TGTACA	1 cut(s)	622
BstDEI	CTNAG	5 cut(s)	264, 386, 429, 726, 762
BstF5I	GGATG	2 cut(s)	179, 277
BstH2I	RGCGCY	2 cut(s)	335, 901
BstHHI	GCGC	3 cut(s)	334, 349, 900
BstKTI	GATC	9 cut(s)	37, 270, 382, 427, 487, 618, 637, 658, 859
BstMAI	GTCTC	2 cut(s)	527, 966
BstMBI	GATC	9 cut(s)	34, 267, 379, 424, 484, 615, 634, 655, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 346, 951
BstNSI	RCATGY	1 cut(s)	925
BstSCI	CCNGG	3 cut(s)	133, 134, 150
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	550, 735
BstV2I	GAAGAC	1 cut(s)	603
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
Bsu15I	ATCGAT	2 cut(s)	312, 618
BsuRI	GGCC	2 cut(s)	805, 954
BsuTUI	ATCGAT	2 cut(s)	312, 618
BtsCI	GGATG	2 cut(s)	179, 277
BtsIMutI	CAGTG	3 cut(s)	561, 697, 833
CaiI	CAGNNNCTG	1 cut(s)	975
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	3 cut(s)	334, 349, 900
Cfr13I	GGNCC	1 cut(s)	953
Cfr9I	CCCGGG	1 cut(s)	134
ClaI	ATCGAT	2 cut(s)	312, 618
CseI	GACGC	1 cut(s)	544
Csp6I	GTAC	5 cut(s)	131, 249, 475, 623, 960
CviAII	CATG	7 cut(s)	415, 445, 529, 650, 659, 716, 922
CviQI	GTAC	5 cut(s)	131, 249, 475, 623, 960
DdeI	CTNAG	5 cut(s)	264, 386, 429, 726, 762
DpnI	GATC	9 cut(s)	36, 269, 381, 426, 486, 617, 636, 657, 858
DpnII	GATC	9 cut(s)	34, 267, 379, 424, 484, 615, 634, 655, 856
EaeI	YGGCCR	1 cut(s)	803
Eam1104I	CTCTTC	2 cut(s)	52, 231
EarI	CTCTTC	2 cut(s)	52, 231
Ecl136II	GAGCTC	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	435
Eco53kI	GAGCTC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	731
Eco88I	CYCGRG	2 cut(s)	134, 166
EcoICRI	GAGCTC	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	435
Esp3I	CGTCTC	1 cut(s)	527
FaeI	CATG	7 cut(s)	418, 448, 532, 653, 662, 719, 925
FatI	CATG	7 cut(s)	414, 444, 528, 649, 658, 715, 921
FbaI	TGATCA	3 cut(s)	34, 379, 634
FblI	GTMKAC	1 cut(s)	822
Fnu4HI	GCNGC	2 cut(s)	539, 749
FokI	GGATG	2 cut(s)	166, 264
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	2 cut(s)	539, 749
FspBI	CTAG	1 cut(s)	957
GlaI	GCGC	3 cut(s)	333, 348, 899
GluI	GCNGC	2 cut(s)	539, 749
GsuI	CTGGAG	1 cut(s)	555
HaeII	RGCGCY	2 cut(s)	335, 901
HaeIII	GGCC	2 cut(s)	805, 954
HapII	CCGG	3 cut(s)	135, 152, 367
HgaI	GACGC	1 cut(s)	544
HhaI	GCGC	3 cut(s)	334, 349, 900
Hin1II	CATG	7 cut(s)	418, 448, 532, 653, 662, 719, 925
Hin6I	GCGC	3 cut(s)	332, 347, 898
HinP1I	GCGC	3 cut(s)	332, 347, 898
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	2 cut(s)	108, 629
HpaII	CCGG	3 cut(s)	135, 152, 367
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	2 cut(s)	249, 823
Hpy188III	TCNNGA	4 cut(s)	428, 520, 659, 969
Hpy8I	GTNNAC	2 cut(s)	249, 823
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	4 cut(s)	526, 661, 733, 800
HpyCH4III	ACNGT	5 cut(s)	187, 256, 400, 458, 692
HpyCH4V	TGCA	2 cut(s)	414, 925
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 346, 951
HpyF3I	CTNAG	5 cut(s)	264, 386, 429, 726, 762
Hsp92II	CATG	7 cut(s)	418, 448, 532, 653, 662, 719, 925
HspAI	GCGC	3 cut(s)	332, 347, 898
Ksp22I	TGATCA	3 cut(s)	34, 379, 634
Kzo9I	GATC	9 cut(s)	34, 267, 379, 424, 484, 615, 634, 655, 856
LmnI	GCTCC	3 cut(s)	149, 329, 574
Lsp1109I	GCAGC	2 cut(s)	550, 735
LweI	GCATC	2 cut(s)	556, 748
MaeI	CTAG	1 cut(s)	957
MaeIII	GTNAC	1 cut(s)	844
MalI	GATC	9 cut(s)	36, 269, 381, 426, 486, 617, 636, 657, 858
MboI	GATC	9 cut(s)	34, 267, 379, 424, 484, 615, 634, 655, 856
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	1 cut(s)	435
MlsI	TGGCCA	1 cut(s)	805
MluCI	AATT	3 cut(s)	175, 580, 662
MluNI	TGGCCA	1 cut(s)	805
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	2 cut(s)	171, 836
MnlI	CCTC	9 cut(s)	126, 221, 224, 232, 291, 345, 352, 602, 956
Mox20I	TGGCCA	1 cut(s)	805
MscI	TGGCCA	1 cut(s)	805
MseI	TTAA	2 cut(s)	258, 579
Msp20I	TGGCCA	1 cut(s)	805
MspI	CCGG	3 cut(s)	135, 152, 367
MspR9I	CCNGG	3 cut(s)	135, 136, 152
MwoI	GCNNNNNNNGC	3 cut(s)	269, 346, 951
NciI	CCSGG	3 cut(s)	135, 136, 152
NdeII	GATC	9 cut(s)	34, 267, 379, 424, 484, 615, 634, 655, 856
NlaIII	CATG	7 cut(s)	418, 448, 532, 653, 662, 719, 925
NlaIV	GGNNCC	1 cut(s)	788
NmuCI	GTSAC	1 cut(s)	844
NspI	RCATGY	1 cut(s)	925
PagI	TCATGA	1 cut(s)	658
PfeI	GAWTC	1 cut(s)	108
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	540, 750
PleI	GAGTC	1 cut(s)	623
PpsI	GAGTC	1 cut(s)	623
PsiI	TTATAA	1 cut(s)	884
Psp124BI	GAGCTC	1 cut(s)	435
PspN4I	GGNNCC	1 cut(s)	788
PspPI	GGNCC	1 cut(s)	953
PstNI	CAGNNNCTG	1 cut(s)	975
PsuI	RGATCY	1 cut(s)	484
RsaI	GTAC	5 cut(s)	132, 250, 476, 624, 961
RsaNI	GTAC	5 cut(s)	131, 249, 475, 623, 960
SacI	GAGCTC	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	258, 579
SatI	GCNGC	2 cut(s)	539, 749
Sau3AI	GATC	9 cut(s)	34, 267, 379, 424, 484, 615, 634, 655, 856
Sau96I	GGNCC	1 cut(s)	953
ScaI	AGTACT	1 cut(s)	961
SchI	GAGTC	1 cut(s)	623
ScrFI	CCNGG	3 cut(s)	135, 136, 152
SduI	GDGCHC	1 cut(s)	435
SfaNI	GCATC	2 cut(s)	556, 748
SfcI	CTRYAG	1 cut(s)	100
SmaI	CCCGGG	1 cut(s)	136
SmlI	CTYRAG	2 cut(s)	601, 840
SmoI	CTYRAG	2 cut(s)	601, 840
Sse9I	AATT	3 cut(s)	175, 580, 662
SsiI	CCGC	4 cut(s)	15, 125, 209, 338
SspMI	CTAG	1 cut(s)	957
SstI	GAGCTC	1 cut(s)	435
StyD4I	CCNGG	3 cut(s)	133, 134, 150
TaaI	ACNGT	5 cut(s)	187, 256, 400, 458, 692
TaqI	TCGA	6 cut(s)	111, 312, 407, 423, 435, 618
TasI	AATT	3 cut(s)	175, 580, 662
TatI	WGTACW	4 cut(s)	248, 474, 622, 959
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	2 cut(s)	258, 579
Tru9I	TTAA	2 cut(s)	258, 579
TscAI	CASTG	3 cut(s)	568, 697, 840
TseFI	GTSAC	1 cut(s)	844
TseI	GCWGC	2 cut(s)	538, 748
Tsp45I	GTSAC	1 cut(s)	844
TspDTI	ATGAA	4 cut(s)	168, 433, 666, 675
TspGWI	ACGGA	1 cut(s)	830
TspMI	CCCGGG	1 cut(s)	134
TspRI	CASTG	3 cut(s)	568, 697, 840
Van91I	CCANNNNNTGG	1 cut(s)	325
XceI	RCATGY	1 cut(s)	925
XmaI	CCCGGG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	822
XspI	CTAG	1 cut(s)	957
ZrmI	AGTACT	1 cut(s)	961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.