MD14G1177200.v1.1

ELK

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
27054900 .. 27062177
7278 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1177200.v1.1.491

Sequence Viewer

Length: 933 bp
ATGATGGAGGATCTGTACGGCCTCGCCGGCTCATCGTCAACGCCTTCAGCTGGTTTCAGCTCTGATCTTTACTACTCTTCGTCAATGGCTGCTATGCCTTTCTCGGCGAATCAGACGGTTCCTGATCATCAGTTGGACTACTACTGCAACTACAGGAGCAGGAGCGCCAGCTTTGAGCCTTTAGCGGCGGCTTTGGGGGAGCAGCGGATACCCGGGACGATGAGACCGGACCAGATGTTTTCAGGGTCGTCGTCCGGAGTGTCGGACGCTGCTTCGGTGGTGGCTGCTGGGATTCAAAGAGGAGGAGGGGAAAGAGGTTGGGGAGAGGAGGTTTCTTGTCAAATGAATGAGATGATCGCTTCACATCCTCTATACCCTAAGCTTCTTCAAGCTTACATCGATTGCCAAAAGGTGGGGGCGCCACCAGAAATAGCAAGTGTGTTGGACGAAATCCGGCCACAAAGTGATCATCTAATTTCCAGGAGACCCACCGATTCAACTTGCATGGCTACTGCCGATCCTGACCTCGATCTCTTCATGGAAAGTTACTGCGATATATTGTTCAAGTACAAATCGGATCTTACGAGGCCATTCGATGAAGCAATCACCTTCTTGAACAAGATGGAGACGCAGCTCAACGCGCTCGCCAATAATACCAACGACGCTGCTGGTTCATCAGACGAAGAAGACTGGAGTGGAGGAGAGATAGAGGCTCAAGACTCTCCGCGGACAAATGAAAATCATGAGCTAAAGGATAAACTGTTGCGTAGATACAGTGGCTATATAAGCACTCTTAAACGTGAGTTTACCAAGAAGAAGAAGAATGGAAAGCTCCCTAGAGAAGCGAGGCAAATTCTCTTTGATTGGTGGAACCTTCACTATAAATGGCCTTACCCAACGGTAACTATAAATTATAACAGCTTGATTTTATAA

Protein Analysis

311

Amino Acids

34.65

Weight (kDa)

4.94

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KNOX1 PF03790 117 - 155 2.1e-19 KNOX1 domain
KNOX2 PF03791 171 - 215 1.6e-21 KNOX2 domain
ELK PF03789 249 - 269 4.8e-10 ELK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 915, 931
AccB1I GGYRCC 1 cut(s) 418
AccB7I CCANNNNNTGG 1 cut(s) 412
AccII CGCG 2 cut(s) 641, 727
AccIII TCCGGA 1 cut(s) 254
AciI CCGC 5 cut(s) 185, 188, 205, 725, 727
AclWI GGATC 3 cut(s) 18, 512, 585
AcoI YGGCCR 1 cut(s) 455
AcsI RAATTY 1 cut(s) 852
AcuI CTGAAG 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 419
AdeI CACNNNGTG 1 cut(s) 464
AfaI GTAC 2 cut(s) 17, 569
AfiI CCNNNNNNNGG 2 cut(s) 50, 412
AgsI TTSAA 5 cut(s) 296, 389, 498, 565, 616
AjnI CCWGG 1 cut(s) 479
AluBI AGCT 9 cut(s) 50, 60, 171, 382, 392, 634, 748, 832, 921
AluI AGCT 9 cut(s) 50, 60, 171, 382, 392, 634, 748, 832, 921
Alw26I GTCTC 3 cut(s) 217, 478, 620
AlwI GGATC 3 cut(s) 18, 512, 585
Ama87I CYCGRG 1 cut(s) 212
Aor13HI TCCGGA 1 cut(s) 254
AoxI GGCC 4 cut(s) 19, 455, 587, 887
ApeKI GCWGC 6 cut(s) 89, 202, 269, 284, 631, 665
ApoI RAATTY 1 cut(s) 852
AspLEI GCGC 3 cut(s) 167, 421, 643
AspS9I GGNCC 1 cut(s) 229
AsuC2I CCSGG 2 cut(s) 213, 214
AsuHPI GGTGA 1 cut(s) 598
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 1 cut(s) 229
BanI GGYRCC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 693
BbvI GCAGC 6 cut(s) 76, 214, 256, 271, 643, 652
BccI CCATC 1 cut(s) 616
BceAI ACGGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 481
BciVI GTATCC 1 cut(s) 201
BclI TGATCA 2 cut(s) 124, 466
BcnI CCSGG 2 cut(s) 213, 214
BcoDI GTCTC 3 cut(s) 217, 478, 620
BfaI CTAG 1 cut(s) 837
BfmI CTRYAG 1 cut(s) 151
BfoI RGCGCY 2 cut(s) 168, 422
BfuI GTATCC 1 cut(s) 201
BglI GCCNNNNNGGC 1 cut(s) 27
BisI GCNGC 8 cut(s) 90, 186, 189, 203, 270, 285, 632, 666
BlsI GCNGC 8 cut(s) 91, 187, 190, 204, 271, 286, 633, 667
Bme1390I CCNGG 3 cut(s) 213, 214, 481
Bme18I GGWCC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 3 cut(s) 120, 420, 872
BmrFI CCNGG 3 cut(s) 213, 214, 481
BpiI GAAGAC 1 cut(s) 693
BpmI CTGGAG 1 cut(s) 712
Bpu10I CCTNAGC 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 699
BpuMI CCSGG 2 cut(s) 213, 214
Bsa29I ATCGAT 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 419
BsaI GGTCTC 2 cut(s) 217, 478
BsaJI CCNNGG 2 cut(s) 212, 725
BsaWI WCCGGW 2 cut(s) 226, 254
BsaXI ACNNNNNCTCC 3 cut(s) 29, 315, 345
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 412
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 695
BseAI TCCGGA 1 cut(s) 254
BseBI CCWGG 1 cut(s) 481
BseCI ATCGAT 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 212, 725
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 2 cut(s) 50, 412
BseNI ACTGG 1 cut(s) 695
BseRI GAGGAG 4 cut(s) 315, 318, 341, 714
BseXI GCAGC 6 cut(s) 76, 214, 256, 271, 643, 652
BseYI CCCAGC 1 cut(s) 287
Bsh1236I CGCG 2 cut(s) 641, 727
BshFI GGCC 4 cut(s) 21, 457, 589, 889
BshNI GGYRCC 1 cut(s) 418
BshVI ATCGAT 1 cut(s) 399
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 5 cut(s) 27, 213, 227, 255, 454
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 2 cut(s) 50, 412
BsmAI GTCTC 3 cut(s) 217, 478, 620
BsmBI CGTCTC 1 cut(s) 620
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 4 cut(s) 21, 457, 589, 889
Bso31I GGTCTC 2 cut(s) 217, 478
BsoBI CYCGRG 1 cut(s) 212
Bsp13I TCCGGA 1 cut(s) 254
Bsp143I GATC 8 cut(s) 10, 64, 124, 354, 466, 517, 529, 577
BspACI CCGC 5 cut(s) 185, 188, 205, 725, 727
BspANI GGCC 4 cut(s) 21, 457, 589, 889
BspDI ATCGAT 1 cut(s) 399
BspEI TCCGGA 1 cut(s) 254
BspFNI CGCG 2 cut(s) 641, 727
BspHI TCATGA 1 cut(s) 742
BspLI GGNNCC 3 cut(s) 120, 420, 872
BspPI GGATC 3 cut(s) 18, 512, 585
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 2 cut(s) 217, 478
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 1 cut(s) 695
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 2 cut(s) 212, 725
BssMI GATC 8 cut(s) 10, 64, 124, 354, 466, 517, 529, 577
BssNI GRCGYC 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 481
Bst4CI ACNGT 4 cut(s) 118, 762, 776, 901
Bst6I CTCTTC 2 cut(s) 82, 539
BstACI GRCGYC 1 cut(s) 419
BstC8I GCNNGC 3 cut(s) 28, 169, 645
BstDEI CTNAG 1 cut(s) 378
BstDSI CCRYGG 1 cut(s) 725
BstF5I GGATG 1 cut(s) 364
BstFNI CGCG 2 cut(s) 641, 727
BstH2I RGCGCY 2 cut(s) 168, 422
BstHHI GCGC 3 cut(s) 167, 421, 643
BstKTI GATC 8 cut(s) 13, 67, 127, 357, 469, 520, 532, 580
BstMAI GTCTC 3 cut(s) 217, 478, 620
BstMBI GATC 8 cut(s) 10, 64, 124, 354, 466, 517, 529, 577
BstMWI GCNNNNNNNGC 3 cut(s) 27, 640, 786
BstNI CCWGG 1 cut(s) 481
BstSCI CCNGG 3 cut(s) 211, 212, 479
BstSFI CTRYAG 1 cut(s) 151
BstUI CGCG 2 cut(s) 641, 727
BstV1I GCAGC 6 cut(s) 76, 214, 256, 271, 643, 652
BstV2I GAAGAC 1 cut(s) 693
BstX2I RGATCY 2 cut(s) 10, 577
BstYI RGATCY 2 cut(s) 10, 577
Bsu15I ATCGAT 1 cut(s) 399
BsuI GTATCC 1 cut(s) 201
BsuRI GGCC 4 cut(s) 21, 457, 589, 889
BsuTUI ATCGAT 1 cut(s) 399
BtgI CCRYGG 1 cut(s) 725
BtsCI GGATG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 781
Cac8I GCNNGC 3 cut(s) 28, 169, 645
CciI TCATGA 1 cut(s) 742
CfoI GCGC 3 cut(s) 167, 421, 643
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 229
Cfr42I CCGCGG 1 cut(s) 728
Cfr9I CCCGGG 1 cut(s) 212
ClaI ATCGAT 1 cut(s) 399
CseI GACGC 3 cut(s) 275, 637, 671
Csp6I GTAC 2 cut(s) 16, 568
CviAII CATG 3 cut(s) 505, 538, 743
CviQI GTAC 2 cut(s) 16, 568
DdeI CTNAG 1 cut(s) 378
DinI GGCGCC 1 cut(s) 420
DpnI GATC 8 cut(s) 12, 66, 126, 356, 468, 519, 531, 579
DpnII GATC 8 cut(s) 10, 64, 124, 354, 466, 517, 529, 577
DraIII CACNNNGTG 1 cut(s) 464
EaeI YGGCCR 1 cut(s) 455
Eam1104I CTCTTC 2 cut(s) 82, 539
EarI CTCTTC 2 cut(s) 82, 539
Eco31I GGTCTC 2 cut(s) 217, 478
Eco47I GGWCC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 479
EgeI GGCGCC 1 cut(s) 420
EheI GGCGCC 1 cut(s) 420
Esp3I CGTCTC 1 cut(s) 620
FaeI CATG 3 cut(s) 508, 541, 746
FaqI GGGAC 1 cut(s) 229
FatI CATG 3 cut(s) 504, 537, 742
FbaI TGATCA 2 cut(s) 124, 466
Fnu4HI GCNGC 8 cut(s) 90, 186, 189, 203, 270, 285, 632, 666
FokI GGATG 1 cut(s) 351
Fsp4HI GCNGC 8 cut(s) 90, 186, 189, 203, 270, 285, 632, 666
FspBI CTAG 1 cut(s) 837
GlaI GCGC 3 cut(s) 166, 420, 642
GluI GCNGC 8 cut(s) 90, 186, 189, 203, 270, 285, 632, 666
GsaI CCCAGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 712
HaeII RGCGCY 2 cut(s) 168, 422
HaeIII GGCC 4 cut(s) 21, 457, 589, 889
HapII CCGG 5 cut(s) 27, 213, 227, 255, 454
HgaI GACGC 3 cut(s) 275, 637, 671
HhaI GCGC 3 cut(s) 167, 421, 643
Hin1I GRCGYC 1 cut(s) 419
Hin1II CATG 3 cut(s) 508, 541, 746
Hin6I GCGC 3 cut(s) 165, 419, 641
HinP1I GCGC 3 cut(s) 165, 419, 641
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HindIII AAGCTT 2 cut(s) 380, 390
HinfI GANTC 4 cut(s) 109, 292, 494, 719
HpaII CCGG 5 cut(s) 27, 213, 227, 255, 454
HphI GGTGA 1 cut(s) 598
Hpy166II GTNNAC 2 cut(s) 39, 807
Hpy188I TCNGA 5 cut(s) 64, 114, 265, 577, 679
Hpy188III TCNNGA 6 cut(s) 122, 255, 521, 613, 716, 743
Hpy8I GTNNAC 2 cut(s) 39, 807
Hpy99I CGWCG 2 cut(s) 253, 665
HpyAV CCTTC 3 cut(s) 54, 619, 884
HpyCH4III ACNGT 4 cut(s) 118, 762, 776, 901
HpyCH4IV ACGT 1 cut(s) 799
HpyCH4V TGCA 2 cut(s) 147, 504
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 640, 786
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 1 cut(s) 799
Hsp92I GRCGYC 1 cut(s) 419
Hsp92II CATG 3 cut(s) 508, 541, 746
HspAI GCGC 3 cut(s) 165, 419, 641
KasI GGCGCC 1 cut(s) 418
Kpn2I TCCGGA 1 cut(s) 254
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
Ksp22I TGATCA 2 cut(s) 124, 466
KspI CCGCGG 1 cut(s) 728
Kzo9I GATC 8 cut(s) 10, 64, 124, 354, 466, 517, 529, 577
LmnI GCTCC 4 cut(s) 156, 162, 199, 837
Lsp1109I GCAGC 6 cut(s) 76, 214, 256, 271, 643, 652
MaeI CTAG 1 cut(s) 837
MaeII ACGT 1 cut(s) 799
MaeIII GTNAC 2 cut(s) 545, 901
MalI GATC 8 cut(s) 12, 66, 126, 356, 468, 519, 531, 579
MboI GATC 8 cut(s) 10, 64, 124, 354, 466, 517, 529, 577
MboII GAAGA 8 cut(s) 69, 377, 526, 695, 698, 826, 829, 832
MflI RGATCY 2 cut(s) 10, 577
MluCI AATT 3 cut(s) 474, 852, 910
Mly113I GGCGCC 1 cut(s) 419
MlyI GAGTC 1 cut(s) 713
MmeI TCCRAC 3 cut(s) 114, 243, 423
MroI TCCGGA 1 cut(s) 254
MroNI GCCGGC 1 cut(s) 26
MseI TTAA 1 cut(s) 795
MspA1I CMGCKG 3 cut(s) 50, 205, 727
MspI CCGG 5 cut(s) 27, 213, 227, 255, 454
MspR9I CCNGG 3 cut(s) 213, 214, 481
MvaI CCWGG 1 cut(s) 481
MvnI CGCG 2 cut(s) 641, 727
MwoI GCNNNNNNNGC 3 cut(s) 27, 640, 786
NaeI GCCGGC 1 cut(s) 28
NarI GGCGCC 1 cut(s) 419
NciI CCSGG 2 cut(s) 213, 214
NdeII GATC 8 cut(s) 10, 64, 124, 354, 466, 517, 529, 577
NgoMIV GCCGGC 1 cut(s) 26
NlaIII CATG 3 cut(s) 508, 541, 746
NlaIV GGNNCC 3 cut(s) 120, 420, 872
NmeAIII GCCGAG 1 cut(s) 83
PagI TCATGA 1 cut(s) 742
PcsI WCGNNNNNNNCGW 1 cut(s) 581
PdiI GCCGGC 1 cut(s) 28
PfeI GAWTC 3 cut(s) 109, 292, 494
PflMI CCANNNNNTGG 1 cut(s) 412
PfoI TCCNGGA 1 cut(s) 479
PkrI GCNGC 8 cut(s) 91, 187, 190, 204, 271, 286, 633, 667
PleI GAGTC 1 cut(s) 713
PluTI GGCGCC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 713
PsiI TTATAA 2 cut(s) 915, 931
Psp6I CCWGG 1 cut(s) 479
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 1 cut(s) 479
PspN4I GGNNCC 3 cut(s) 120, 420, 872
PspPI GGNCC 1 cut(s) 229
PsuI RGATCY 2 cut(s) 10, 577
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 2 cut(s) 17, 569
RsaNI GTAC 2 cut(s) 16, 568
SacII CCGCGG 1 cut(s) 728
SaqAI TTAA 1 cut(s) 795
SatI GCNGC 8 cut(s) 90, 186, 189, 203, 270, 285, 632, 666
Sau3AI GATC 8 cut(s) 10, 64, 124, 354, 466, 517, 529, 577
Sau96I GGNCC 1 cut(s) 229
SchI GAGTC 1 cut(s) 713
ScrFI CCNGG 3 cut(s) 213, 214, 481
SfcI CTRYAG 1 cut(s) 151
SfoI GGCGCC 1 cut(s) 420
Sfr303I CCGCGG 1 cut(s) 728
SgrBI CCGCGG 1 cut(s) 728
SinI GGWCC 1 cut(s) 229
SmaI CCCGGG 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 714
SmoI CTYRAG 1 cut(s) 714
Sse9I AATT 3 cut(s) 474, 852, 910
SsiI CCGC 5 cut(s) 185, 188, 205, 725, 727
SspDI GGCGCC 1 cut(s) 418
SspMI CTAG 1 cut(s) 837
StyD4I CCNGG 3 cut(s) 211, 212, 479
TaaI ACNGT 4 cut(s) 118, 762, 776, 901
TaiI ACGT 1 cut(s) 802
TaqI TCGA 3 cut(s) 399, 528, 594
TasI AATT 3 cut(s) 474, 852, 910
TatI WGTACW 1 cut(s) 567
TauI GCSGC 2 cut(s) 188, 191
TfiI GAWTC 3 cut(s) 109, 292, 494
Tru1I TTAA 1 cut(s) 795
Tru9I TTAA 1 cut(s) 795
TscAI CASTG 1 cut(s) 781
TseI GCWGC 6 cut(s) 89, 202, 269, 284, 631, 665
TspDTI ATGAA 5 cut(s) 359, 526, 612, 663, 750
TspMI CCCGGG 1 cut(s) 212
TspRI CASTG 1 cut(s) 781
Van91I CCANNNNNTGG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 229
XapI RAATTY 1 cut(s) 852
XmaI CCCGGG 1 cut(s) 212
XspI CTAG 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.