Rh4CG347700

Homeobox protein knotted-1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
60559997 .. 60567111
7115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG347700.1

Sequence Viewer

Length: 918 bp
ATGGAGGAAATGTACGGATTGCAATCAGCGGTGGATTACGGGGATAAGTCGACGGACTACGCCGACAAGGCCCTTATGACGCCGGAGAACCTGATCCTACCGATGGATTACCAGAGCCTGCTCTCCTCCGGAGCTTTCCGCGACCATAGGGTCCCGATGATGTTCGGATCCGACGCCGGCGACTTGTACTCGGCCATATCCTCCGTGCCGGAGTTTCGGCGCGGAGAGGAAGATGTTTTTGGAGCCATCAAAGCCAAAATTGCTTCCCATCCAAGCTACCCTAGACTCATTGAGGCCTACATCGATTGCCAGAAGGTAGGAGCGCCTCCGGAAATAGCGAGCTTCTTGGAGGAAATCCGCCGAGAAAATGACCTTTATAAACGAGAAAGAGACGCTGCTATGTCCACGTGTTTAGGAGCCGATCCCGAGCTCGATGAGTTCATGGAAACCTACTGCGATATGCTGGTCAAGTACAAATCAGATCTAGCAAGGCCTTTTGATGAAGCCACCACGTTCTTGAACAAGATTGAAACGCAACTCAGCAATCTCTGCATTCGAACTCTCTCCGATGAAGGTGCTGTGTCATCAGAGGAGGAGTTCAGCGGAGGCGAATTAGAGGTACAAGAAGCTCAAGCAAGGGGAGAAGATCGAGATCTCAAAAATAGGCTTTTCCGTAAGTTTGGCAGTCATATTGGCACCTTGAAGCTGGAATTCTCCAAGAAGAAGAAGAAAGGAAAGCTTCCGAAGGAAGCAAGACAAGCGTTACTTCATTGGTGGAGTGTTCACTATAAATGGCCATACCCGACGGTACTACTTCATTATCTCGAACGGTCTTATATACAACCAGTGATAGAGAAGATGTACTCGATATGTGTCACACTCATATTCATAGCTGTCGCTTTACATTGCAATTCATGA

Protein Analysis

305

Amino Acids

34.81

Weight (kDa)

5.25

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KNOX1 PF03790 82 - 124 1.7e-21 KNOX1 domain
KNOX2 PF03791 137 - 184 1.3e-26 KNOX2 domain
ELK PF03789 218 - 239 5e-06 ELK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 378
AasI GACNNNNNNGTC 1 cut(s) 149
AccB1I GGYRCC 1 cut(s) 695
AccI GTMKAC 1 cut(s) 50
AccII CGCG 2 cut(s) 141, 222
AccIII TCCGGA 2 cut(s) 128, 328
AciI CCGC 5 cut(s) 29, 139, 222, 358, 603
AclWI GGATC 4 cut(s) 88, 162, 175, 416
AcoI YGGCCR 2 cut(s) 192, 794
AcsI RAATTY 1 cut(s) 710
AcvI CACGTG 1 cut(s) 408
AcyI GRCGYC 2 cut(s) 80, 174
AfaI GTAC 6 cut(s) 14, 188, 473, 621, 810, 863
AfiI CCNNNNNNNGG 1 cut(s) 103
AflIII ACRYGT 1 cut(s) 407
AgsI TTSAA 3 cut(s) 520, 530, 703
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
AluBI AGCT 8 cut(s) 134, 276, 342, 430, 629, 706, 739, 893
AluI AGCT 8 cut(s) 134, 276, 342, 430, 629, 706, 739, 893
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 1 cut(s) 384
AlwI GGATC 4 cut(s) 88, 162, 175, 416
AlwNI CAGNNNCTG 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 425
Aor13HI TCCGGA 2 cut(s) 128, 328
AoxI GGCC 5 cut(s) 69, 192, 294, 491, 794
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 1 cut(s) 710
AspLEI GCGC 2 cut(s) 222, 325
AspS9I GGNCC 2 cut(s) 70, 151
AsuII TTCGAA 1 cut(s) 556
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 1 cut(s) 151
BalI TGGCCA 1 cut(s) 796
BamHI GGATCC 1 cut(s) 167
BanI GGYRCC 1 cut(s) 695
BanII GRGCYC 1 cut(s) 432
BbrPI CACGTG 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 1 cut(s) 382
BccI CCATC 3 cut(s) 97, 254, 276
BcgI CGANNNNNNTGC 2 cut(s) 557, 591
BcoDI GTCTC 1 cut(s) 384
BfaI CTAG 2 cut(s) 282, 485
BfoI RGCGCY 1 cut(s) 326
BglI GCCNNNNNGGC 1 cut(s) 68
BglII AGATCT 2 cut(s) 481, 652
BisI GCNGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 397
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 425
BmgT120I GGNCC 2 cut(s) 70, 151
BmiI GGNNCC 6 cut(s) 152, 153, 169, 244, 418, 697
Bpu14I TTCGAA 1 cut(s) 556
BpuEI CTTGAG 1 cut(s) 615
Bsa29I ATCGAT 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 408
BsaBI GATNNNNATC 2 cut(s) 22, 651
BsaHI GRCGYC 2 cut(s) 80, 174
BsaWI WCCGGW 2 cut(s) 128, 328
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 845
Bse3DI GCAATG 1 cut(s) 904
Bse8I GATNNNNATC 2 cut(s) 22, 651
BseAI TCCGGA 2 cut(s) 128, 328
BseCI ATCGAT 1 cut(s) 303
BseGI GGATG 1 cut(s) 268
BseJI GATNNNNATC 2 cut(s) 22, 651
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 904
BseMII CTCAG 1 cut(s) 553
BseNI ACTGG 1 cut(s) 845
BseRI GAGGAG 3 cut(s) 115, 605, 608
BseXI GCAGC 1 cut(s) 382
Bsh1236I CGCG 2 cut(s) 141, 222
BshFI GGCC 5 cut(s) 71, 194, 296, 493, 796
BshNI GGYRCC 1 cut(s) 695
BshVI ATCGAT 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 432
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 5 cut(s) 83, 129, 177, 209, 329
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 384
BsmBI CGTCTC 1 cut(s) 384
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 552
BsnI GGCC 5 cut(s) 71, 194, 296, 493, 796
BsoBI CYCGRG 1 cut(s) 425
Bsp119I TTCGAA 1 cut(s) 556
Bsp1286I GDGCHC 1 cut(s) 432
Bsp13I TCCGGA 2 cut(s) 128, 328
Bsp143I GATC 6 cut(s) 93, 167, 421, 481, 646, 652
BspACI CCGC 5 cut(s) 29, 139, 222, 358, 603
BspANI GGCC 5 cut(s) 71, 194, 296, 493, 796
BspCNI CTCAG 1 cut(s) 552
BspDI ATCGAT 1 cut(s) 303
BspEI TCCGGA 2 cut(s) 128, 328
BspFNI CGCG 2 cut(s) 141, 222
BspHI TCATGA 1 cut(s) 914
BspLI GGNNCC 6 cut(s) 152, 153, 169, 244, 418, 697
BspPI GGATC 4 cut(s) 88, 162, 175, 416
BspT104I TTCGAA 1 cut(s) 556
BspT107I GGYRCC 1 cut(s) 695
BsrDI GCAATG 1 cut(s) 904
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 1 cut(s) 845
BssAI RCCGGY 1 cut(s) 176
BssMI GATC 6 cut(s) 93, 167, 421, 481, 646, 652
BssNI GRCGYC 2 cut(s) 80, 174
Bst4CI ACNGT 2 cut(s) 808, 831
BstACI GRCGYC 2 cut(s) 80, 174
BstAPI GCANNNNNTGC 1 cut(s) 549
BstBAI YACGTR 1 cut(s) 408
BstBI TTCGAA 1 cut(s) 556
BstC8I GCNNGC 3 cut(s) 119, 178, 340
BstDEI CTNAG 1 cut(s) 539
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 2 cut(s) 141, 222
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 2 cut(s) 222, 325
BstKTI GATC 6 cut(s) 96, 170, 424, 484, 649, 655
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 6 cut(s) 93, 167, 421, 481, 646, 652
BstMWI GCNNNNNNNGC 5 cut(s) 68, 251, 260, 549, 758
BstUI CGCG 2 cut(s) 141, 222
BstV1I GCAGC 1 cut(s) 382
BstX2I RGATCY 3 cut(s) 167, 481, 652
BstYI RGATCY 3 cut(s) 167, 481, 652
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 5 cut(s) 71, 194, 296, 493, 796
BsuTUI ATCGAT 1 cut(s) 303
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 852
Cac8I GCNNGC 3 cut(s) 119, 178, 340
CaiI CAGNNNCTG 1 cut(s) 118
CciI TCATGA 1 cut(s) 914
CfoI GCGC 2 cut(s) 222, 325
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 2 cut(s) 70, 151
ClaI ATCGAT 1 cut(s) 303
CseI GACGC 3 cut(s) 88, 182, 401
Csp6I GTAC 6 cut(s) 13, 187, 472, 620, 809, 862
CviAII CATG 2 cut(s) 442, 915
CviQI GTAC 6 cut(s) 13, 187, 472, 620, 809, 862
DdeI CTNAG 1 cut(s) 539
DpnI GATC 6 cut(s) 95, 169, 423, 483, 648, 654
DpnII GATC 6 cut(s) 93, 167, 421, 481, 646, 652
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 2 cut(s) 192, 794
EciI GGCGGA 1 cut(s) 347
Ecl136II GAGCTC 1 cut(s) 430
Eco147I AGGCCT 2 cut(s) 296, 493
Eco24I GRGCYC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 430
Eco72I CACGTG 1 cut(s) 408
Eco88I CYCGRG 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 430
EcoO109I RGGNCCY 2 cut(s) 70, 151
EcoRI GAATTC 1 cut(s) 710
EcoT38I GRGCYC 1 cut(s) 432
Esp3I CGTCTC 1 cut(s) 384
FaeI CATG 2 cut(s) 445, 918
FalI AAGNNNNNCTT 4 cut(s) 723, 755, 750, 782
FaqI GGGAC 1 cut(s) 137
FatI CATG 2 cut(s) 441, 914
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 396
FokI GGATG 1 cut(s) 255
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 1 cut(s) 396
FspBI CTAG 2 cut(s) 282, 485
GlaI GCGC 2 cut(s) 221, 324
GluI GCNGC 1 cut(s) 396
HaeII RGCGCY 1 cut(s) 326
HaeIII GGCC 5 cut(s) 71, 194, 296, 493, 796
HapII CCGG 5 cut(s) 83, 129, 177, 209, 329
HgaI GACGC 3 cut(s) 88, 182, 401
HhaI GCGC 2 cut(s) 222, 325
Hin1I GRCGYC 2 cut(s) 80, 174
Hin1II CATG 2 cut(s) 445, 918
Hin6I GCGC 2 cut(s) 220, 323
HinP1I GCGC 2 cut(s) 220, 323
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 737
HinfI GANTC 1 cut(s) 285
HpaII CCGG 5 cut(s) 83, 129, 177, 209, 329
Hpy166II GTNNAC 3 cut(s) 51, 405, 784
Hpy188I TCNGA 6 cut(s) 167, 172, 481, 568, 589, 744
Hpy188III TCNNGA 8 cut(s) 129, 154, 329, 425, 517, 650, 824, 915
Hpy8I GTNNAC 3 cut(s) 51, 405, 784
Hpy99I CGWCG 3 cut(s) 55, 176, 808
HpyAV CCTTC 3 cut(s) 307, 566, 739
HpyCH4III ACNGT 2 cut(s) 808, 831
HpyCH4IV ACGT 2 cut(s) 407, 512
HpyCH4V TGCA 3 cut(s) 22, 552, 909
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 251, 260, 549, 758
HpyF3I CTNAG 1 cut(s) 539
HpySE526I ACGT 2 cut(s) 407, 512
Hsp92I GRCGYC 2 cut(s) 80, 174
Hsp92II CATG 2 cut(s) 445, 918
HspAI GCGC 2 cut(s) 220, 323
KflI GGGWCCC 1 cut(s) 151
Kpn2I TCCGGA 2 cut(s) 128, 328
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Kzo9I GATC 6 cut(s) 93, 167, 421, 481, 646, 652
LmnI GCTCC 4 cut(s) 131, 242, 320, 416
Lsp1109I GCAGC 1 cut(s) 382
MaeI CTAG 2 cut(s) 282, 485
MaeII ACGT 2 cut(s) 407, 512
MaeIII GTNAC 2 cut(s) 762, 874
MalI GATC 6 cut(s) 95, 169, 423, 483, 648, 654
MboI GATC 6 cut(s) 93, 167, 421, 481, 646, 652
MboII GAAGA 6 cut(s) 242, 656, 733, 736, 739, 868
MflI RGATCY 3 cut(s) 167, 481, 652
MhlI GDGCHC 1 cut(s) 432
MlsI TGGCCA 1 cut(s) 796
MluCI AATT 4 cut(s) 258, 611, 710, 910
MluNI TGGCCA 1 cut(s) 796
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 195
Mox20I TGGCCA 1 cut(s) 796
MreI CGCCGGCG 1 cut(s) 176
MroI TCCGGA 2 cut(s) 128, 328
MroNI GCCGGC 1 cut(s) 176
MscI TGGCCA 1 cut(s) 796
Msp20I TGGCCA 1 cut(s) 796
MspA1I CMGCKG 2 cut(s) 29, 603
MspI CCGG 5 cut(s) 83, 129, 177, 209, 329
Mva1269I GAATGC 1 cut(s) 552
MvnI CGCG 2 cut(s) 141, 222
MwoI GCNNNNNNNGC 5 cut(s) 68, 251, 260, 549, 758
NaeI GCCGGC 1 cut(s) 178
NdeII GATC 6 cut(s) 93, 167, 421, 481, 646, 652
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 2 cut(s) 445, 918
NlaIV GGNNCC 6 cut(s) 152, 153, 169, 244, 418, 697
NmeAIII GCCGAG 2 cut(s) 170, 386
NmuCI GTSAC 1 cut(s) 874
NspV TTCGAA 1 cut(s) 556
PagI TCATGA 1 cut(s) 914
PceI AGGCCT 2 cut(s) 296, 493
PctI GAATGC 1 cut(s) 552
PdiI GCCGGC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 397
PleI GAGTC 1 cut(s) 279
PmaCI CACGTG 1 cut(s) 408
PmlI CACGTG 1 cut(s) 408
PpsI GAGTC 1 cut(s) 279
Ppu21I YACGTR 1 cut(s) 408
PpuMI RGGWCCY 1 cut(s) 151
PsiI TTATAA 1 cut(s) 378
Psp124BI GAGCTC 1 cut(s) 432
Psp5II RGGWCCY 1 cut(s) 151
PspCI CACGTG 1 cut(s) 408
PspN4I GGNNCC 6 cut(s) 152, 153, 169, 244, 418, 697
PspPI GGNCC 2 cut(s) 70, 151
PspPPI RGGWCCY 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 118
PsuI RGATCY 3 cut(s) 167, 481, 652
RsaI GTAC 6 cut(s) 14, 188, 473, 621, 810, 863
RsaNI GTAC 6 cut(s) 13, 187, 472, 620, 809, 862
SacI GAGCTC 1 cut(s) 432
SalI GTCGAC 1 cut(s) 49
SatI GCNGC 1 cut(s) 396
Sau3AI GATC 6 cut(s) 93, 167, 421, 481, 646, 652
Sau96I GGNCC 2 cut(s) 70, 151
SchI GAGTC 1 cut(s) 279
SduI GDGCHC 1 cut(s) 432
SfuI TTCGAA 1 cut(s) 556
SgrAI CRCCGGYG 1 cut(s) 176
SinI GGWCC 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 630
SmoI CTYRAG 1 cut(s) 630
Sse9I AATT 4 cut(s) 258, 611, 710, 910
SseBI AGGCCT 2 cut(s) 296, 493
SsiI CCGC 5 cut(s) 29, 139, 222, 358, 603
SspMI CTAG 2 cut(s) 282, 485
SstI GAGCTC 1 cut(s) 432
StuI AGGCCT 2 cut(s) 296, 493
TaaI ACNGT 2 cut(s) 808, 831
TaiI ACGT 2 cut(s) 410, 515
TaqI TCGA 7 cut(s) 50, 303, 432, 556, 649, 825, 866
TasI AATT 4 cut(s) 258, 611, 710, 910
TatI WGTACW 3 cut(s) 186, 471, 861
TscAI CASTG 1 cut(s) 852
TseFI GTSAC 1 cut(s) 874
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 874
TspDTI ATGAA 7 cut(s) 430, 516, 585, 758, 806, 877, 903
TspGWI ACGGA 4 cut(s) 30, 68, 193, 662
TspRI CASTG 1 cut(s) 852
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 1 cut(s) 710
XmiI GTMKAC 1 cut(s) 50
XspI CTAG 2 cut(s) 282, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.